Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04220 and CA264_04225 are separated by 4 nucleotides CA264_04225 and CA264_04230 overlap by 4 nucleotides CA264_04230 and CA264_04235 are separated by 4 nucleotides CA264_04235 and CA264_04240 are separated by 231 nucleotides
CA264_04220: CA264_04220 - NADH-quinone oxidoreductase subunit L, at 975,311 to 977,197
_04220
CA264_04225: CA264_04225 - NADH-quinone oxidoreductase subunit K, at 977,202 to 977,510
_04225
CA264_04230: CA264_04230 - NADH:ubiquinone oxidoreductase subunit J, at 977,507 to 978,043
_04230
CA264_04235: CA264_04235 - NADH-quinone oxidoreductase subunit I, at 978,048 to 978,563
_04235
CA264_04240: CA264_04240 - NADH-quinone oxidoreductase subunit H, at 978,795 to 979,757
_04240
Position (kb) 978
979 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 977.066 kb on - strand at 977.144 kb on + strand at 977.145 kb on - strand at 977.148 kb on - strand at 977.148 kb on - strand at 977.148 kb on - strand at 977.156 kb on + strand at 977.214 kb on + strand at 977.214 kb on + strand at 977.214 kb on + strand at 977.214 kb on + strand at 977.214 kb on + strand at 977.215 kb on - strand at 977.215 kb on - strand at 977.255 kb on - strand, within CA264_04225 at 977.280 kb on + strand, within CA264_04225 at 977.354 kb on + strand, within CA264_04225 at 977.355 kb on - strand, within CA264_04225 at 977.408 kb on + strand, within CA264_04225 at 977.414 kb on + strand, within CA264_04225 at 977.414 kb on + strand, within CA264_04225 at 977.415 kb on - strand, within CA264_04225 at 977.415 kb on - strand, within CA264_04225 at 977.493 kb on + strand at 977.493 kb on + strand at 977.494 kb on - strand at 977.494 kb on - strand at 977.597 kb on + strand, within CA264_04230 at 977.624 kb on + strand, within CA264_04230 at 977.624 kb on + strand, within CA264_04230 at 977.626 kb on + strand, within CA264_04230 at 977.631 kb on + strand, within CA264_04230 at 977.642 kb on + strand, within CA264_04230 at 977.718 kb on + strand, within CA264_04230 at 977.771 kb on - strand, within CA264_04230 at 977.771 kb on - strand, within CA264_04230 at 977.780 kb on + strand, within CA264_04230 at 977.780 kb on + strand, within CA264_04230 at 978.050 kb on - strand at 978.057 kb on + strand at 978.058 kb on - strand at 978.058 kb on - strand at 978.058 kb on - strand at 978.058 kb on - strand at 978.139 kb on + strand, within CA264_04235 at 978.139 kb on + strand, within CA264_04235 at 978.140 kb on - strand, within CA264_04235 at 978.142 kb on + strand, within CA264_04235 at 978.142 kb on + strand, within CA264_04235 at 978.143 kb on - strand, within CA264_04235 at 978.143 kb on - strand, within CA264_04235 at 978.148 kb on + strand, within CA264_04235 at 978.196 kb on + strand, within CA264_04235 at 978.256 kb on + strand, within CA264_04235 at 978.256 kb on + strand, within CA264_04235 at 978.280 kb on + strand, within CA264_04235 at 978.376 kb on - strand, within CA264_04235 at 978.494 kb on - strand, within CA264_04235 at 978.543 kb on - strand at 978.557 kb on + strand at 978.563 kb on + strand at 978.564 kb on - strand at 978.564 kb on - strand at 978.586 kb on + strand at 978.588 kb on + strand at 978.641 kb on + strand at 978.641 kb on + strand at 978.664 kb on + strand at 978.748 kb on - strand at 978.771 kb on + strand at 978.778 kb on - strand at 978.953 kb on + strand, within CA264_04240 at 978.954 kb on - strand, within CA264_04240 at 979.009 kb on + strand, within CA264_04240 at 979.009 kb on + strand, within CA264_04240 at 979.010 kb on - strand, within CA264_04240 at 979.051 kb on + strand, within CA264_04240 at 979.383 kb on + strand, within CA264_04240 at 979.383 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.386 kb on - strand, within CA264_04240 at 979.386 kb on - strand, within CA264_04240 at 979.393 kb on + strand, within CA264_04240 at 979.393 kb on + strand, within CA264_04240 at 979.394 kb on - strand, within CA264_04240 at 979.394 kb on - strand, within CA264_04240 at 979.499 kb on + strand, within CA264_04240
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 977,066 - -1.1 977,144 + +0.4 977,145 - -0.4 977,148 - +0.4 977,148 - -0.3 977,148 - +1.6 977,156 + -0.9 977,214 + +0.1 977,214 + -0.2 977,214 + +0.3 977,214 + +0.1 977,214 + -1.4 977,215 - -0.2 977,215 - +0.4 977,255 - CA264_04225 0.17 -0.7 977,280 + CA264_04225 0.25 +0.4 977,354 + CA264_04225 0.49 -0.2 977,355 - CA264_04225 0.50 +1.1 977,408 + CA264_04225 0.67 -0.4 977,414 + CA264_04225 0.69 -1.3 977,414 + CA264_04225 0.69 -0.6 977,415 - CA264_04225 0.69 +0.1 977,415 - CA264_04225 0.69 +0.4 977,493 + +0.2 977,493 + +0.4 977,494 - -1.4 977,494 - -0.4 977,597 + CA264_04230 0.17 -0.4 977,624 + CA264_04230 0.22 +0.9 977,624 + CA264_04230 0.22 -0.9 977,626 + CA264_04230 0.22 -0.4 977,631 + CA264_04230 0.23 -0.5 977,642 + CA264_04230 0.25 -0.2 977,718 + CA264_04230 0.39 -0.2 977,771 - CA264_04230 0.49 +0.3 977,771 - CA264_04230 0.49 +0.2 977,780 + CA264_04230 0.51 -2.0 977,780 + CA264_04230 0.51 +0.2 978,050 - +0.1 978,057 + +0.1 978,058 - -0.8 978,058 - -0.3 978,058 - -1.2 978,058 - -0.7 978,139 + CA264_04235 0.18 +1.6 978,139 + CA264_04235 0.18 -0.2 978,140 - CA264_04235 0.18 -0.2 978,142 + CA264_04235 0.18 -0.4 978,142 + CA264_04235 0.18 +0.1 978,143 - CA264_04235 0.18 -0.8 978,143 - CA264_04235 0.18 -0.8 978,148 + CA264_04235 0.19 -0.3 978,196 + CA264_04235 0.29 -0.2 978,256 + CA264_04235 0.40 +0.2 978,256 + CA264_04235 0.40 +0.6 978,280 + CA264_04235 0.45 -1.0 978,376 - CA264_04235 0.64 +0.5 978,494 - CA264_04235 0.86 +0.3 978,543 - -0.2 978,557 + +0.2 978,563 + -0.4 978,564 - +0.0 978,564 - +1.1 978,586 + +0.1 978,588 + +2.2 978,641 + -0.0 978,641 + -0.4 978,664 + +0.2 978,748 - -0.2 978,771 + -2.0 978,778 - -0.7 978,953 + CA264_04240 0.16 +0.0 978,954 - CA264_04240 0.17 -0.6 979,009 + CA264_04240 0.22 +2.9 979,009 + CA264_04240 0.22 -1.0 979,010 - CA264_04240 0.22 -1.6 979,051 + CA264_04240 0.27 +0.6 979,383 + CA264_04240 0.61 -0.3 979,383 + CA264_04240 0.61 +0.9 979,385 + CA264_04240 0.61 -0.6 979,385 + CA264_04240 0.61 +0.3 979,385 + CA264_04240 0.61 -0.2 979,385 + CA264_04240 0.61 +0.2 979,386 - CA264_04240 0.61 +0.3 979,386 - CA264_04240 0.61 +0.6 979,393 + CA264_04240 0.62 +0.9 979,393 + CA264_04240 0.62 +0.0 979,394 - CA264_04240 0.62 +0.3 979,394 - CA264_04240 0.62 +1.2 979,499 + CA264_04240 0.73 +0.6
Or see this region's nucleotide sequence