Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03715

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03710 and CA264_03715 are separated by 234 nucleotidesCA264_03715 and CA264_03720 are separated by 165 nucleotides CA264_03710: CA264_03710 - AraC family transcriptional regulator, at 869,843 to 870,721 _03710 CA264_03715: CA264_03715 - DUF983 domain-containing protein, at 870,956 to 871,285 _03715 CA264_03720: CA264_03720 - ABC transporter, at 871,451 to 872,368 _03720 Position (kb) 870 871 872Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 870.003 kb on + strand, within CA264_03710at 870.008 kb on + strand, within CA264_03710at 870.009 kb on - strand, within CA264_03710at 870.009 kb on - strand, within CA264_03710at 870.077 kb on + strand, within CA264_03710at 870.088 kb on + strand, within CA264_03710at 870.091 kb on - strand, within CA264_03710at 870.218 kb on - strand, within CA264_03710at 870.306 kb on - strand, within CA264_03710at 870.522 kb on + strand, within CA264_03710at 870.522 kb on + strand, within CA264_03710at 870.564 kb on - strand, within CA264_03710at 870.564 kb on - strand, within CA264_03710at 870.579 kb on + strand, within CA264_03710at 870.643 kb on + strandat 870.644 kb on - strandat 870.648 kb on + strandat 870.648 kb on + strandat 870.655 kb on - strandat 870.696 kb on + strandat 870.721 kb on + strandat 870.722 kb on - strandat 870.745 kb on + strandat 870.746 kb on - strandat 870.754 kb on - strandat 870.808 kb on + strandat 870.813 kb on + strandat 870.814 kb on - strandat 870.815 kb on + strandat 870.844 kb on - strandat 870.857 kb on - strandat 870.907 kb on - strandat 870.907 kb on - strandat 870.910 kb on - strandat 870.929 kb on - strandat 870.974 kb on + strandat 870.975 kb on - strandat 870.975 kb on - strandat 871.049 kb on + strand, within CA264_03715at 871.049 kb on + strand, within CA264_03715at 871.052 kb on + strand, within CA264_03715at 871.065 kb on - strand, within CA264_03715at 871.099 kb on - strand, within CA264_03715at 871.112 kb on - strand, within CA264_03715at 871.112 kb on - strand, within CA264_03715at 871.114 kb on - strand, within CA264_03715at 871.138 kb on + strand, within CA264_03715at 871.138 kb on + strand, within CA264_03715at 871.139 kb on - strand, within CA264_03715at 871.139 kb on - strand, within CA264_03715at 871.229 kb on - strand, within CA264_03715at 871.229 kb on - strand, within CA264_03715at 871.230 kb on + strand, within CA264_03715at 871.230 kb on + strand, within CA264_03715at 871.241 kb on + strand, within CA264_03715at 871.268 kb on - strandat 871.283 kb on + strandat 871.284 kb on - strandat 871.284 kb on - strandat 871.288 kb on + strandat 871.297 kb on - strandat 871.305 kb on + strandat 871.306 kb on - strandat 871.311 kb on + strandat 871.375 kb on + strandat 871.462 kb on + strandat 871.462 kb on + strandat 871.514 kb on + strandat 871.663 kb on - strand, within CA264_03720at 871.672 kb on + strand, within CA264_03720at 871.697 kb on + strand, within CA264_03720at 871.703 kb on - strand, within CA264_03720at 871.798 kb on - strand, within CA264_03720at 871.798 kb on - strand, within CA264_03720at 871.810 kb on + strand, within CA264_03720at 871.817 kb on + strand, within CA264_03720at 871.874 kb on - strand, within CA264_03720at 871.874 kb on - strand, within CA264_03720at 871.878 kb on + strand, within CA264_03720at 871.878 kb on + strand, within CA264_03720at 871.878 kb on + strand, within CA264_03720at 871.879 kb on - strand, within CA264_03720at 871.879 kb on - strand, within CA264_03720at 871.911 kb on - strand, within CA264_03720at 871.968 kb on - strand, within CA264_03720at 872.031 kb on - strand, within CA264_03720at 872.040 kb on + strand, within CA264_03720at 872.040 kb on + strand, within CA264_03720at 872.175 kb on + strand, within CA264_03720at 872.176 kb on - strand, within CA264_03720at 872.217 kb on + strand, within CA264_03720at 872.217 kb on + strand, within CA264_03720at 872.218 kb on - strand, within CA264_03720at 872.218 kb on - strand, within CA264_03720at 872.218 kb on - strand, within CA264_03720

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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870,003 + CA264_03710 0.18 +0.6
870,008 + CA264_03710 0.19 -0.8
870,009 - CA264_03710 0.19 -0.2
870,009 - CA264_03710 0.19 +0.2
870,077 + CA264_03710 0.27 +1.2
870,088 + CA264_03710 0.28 -0.1
870,091 - CA264_03710 0.28 +0.0
870,218 - CA264_03710 0.43 -0.0
870,306 - CA264_03710 0.53 -0.0
870,522 + CA264_03710 0.77 -0.4
870,522 + CA264_03710 0.77 +0.1
870,564 - CA264_03710 0.82 +0.2
870,564 - CA264_03710 0.82 +0.2
870,579 + CA264_03710 0.84 +0.6
870,643 + +0.6
870,644 - +1.8
870,648 + +0.6
870,648 + +0.0
870,655 - +1.2
870,696 + -0.3
870,721 + -0.1
870,722 - -0.3
870,745 + -0.4
870,746 - +0.9
870,754 - +0.4
870,808 + +0.6
870,813 + -2.2
870,814 - +0.6
870,815 + -0.0
870,844 - +1.6
870,857 - +0.2
870,907 - -0.4
870,907 - -2.0
870,910 - -0.6
870,929 - -1.3
870,974 + +0.6
870,975 - -1.1
870,975 - -0.2
871,049 + CA264_03715 0.28 -2.8
871,049 + CA264_03715 0.28 -1.3
871,052 + CA264_03715 0.29 -2.8
871,065 - CA264_03715 0.33 -1.0
871,099 - CA264_03715 0.43 -0.5
871,112 - CA264_03715 0.47 -1.0
871,112 - CA264_03715 0.47 -1.4
871,114 - CA264_03715 0.48 -1.3
871,138 + CA264_03715 0.55 -1.8
871,138 + CA264_03715 0.55 -0.7
871,139 - CA264_03715 0.55 -0.5
871,139 - CA264_03715 0.55 +0.6
871,229 - CA264_03715 0.83 -1.0
871,229 - CA264_03715 0.83 +0.6
871,230 + CA264_03715 0.83 -0.3
871,230 + CA264_03715 0.83 -1.7
871,241 + CA264_03715 0.86 -0.4
871,268 - +0.2
871,283 + -0.2
871,284 - -0.4
871,284 - -0.0
871,288 + -0.9
871,297 - +0.2
871,305 + -0.8
871,306 - +0.5
871,311 + +0.1
871,375 + -0.1
871,462 + +0.4
871,462 + -0.8
871,514 + +0.6
871,663 - CA264_03720 0.23 +0.1
871,672 + CA264_03720 0.24 +0.6
871,697 + CA264_03720 0.27 -0.2
871,703 - CA264_03720 0.27 -0.1
871,798 - CA264_03720 0.38 +1.3
871,798 - CA264_03720 0.38 -0.3
871,810 + CA264_03720 0.39 -0.0
871,817 + CA264_03720 0.40 -0.1
871,874 - CA264_03720 0.46 +0.1
871,874 - CA264_03720 0.46 +1.0
871,878 + CA264_03720 0.47 +0.1
871,878 + CA264_03720 0.47 +1.3
871,878 + CA264_03720 0.47 -0.0
871,879 - CA264_03720 0.47 +0.1
871,879 - CA264_03720 0.47 +0.5
871,911 - CA264_03720 0.50 -0.2
871,968 - CA264_03720 0.56 +1.6
872,031 - CA264_03720 0.63 -1.8
872,040 + CA264_03720 0.64 -0.3
872,040 + CA264_03720 0.64 +0.6
872,175 + CA264_03720 0.79 -0.2
872,176 - CA264_03720 0.79 +0.4
872,217 + CA264_03720 0.83 +0.2
872,217 + CA264_03720 0.83 +0.4
872,218 - CA264_03720 0.84 -0.0
872,218 - CA264_03720 0.84 -0.3
872,218 - CA264_03720 0.84 -1.4

Or see this region's nucleotide sequence