Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03705

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03700 and CA264_03705 are separated by 38 nucleotidesCA264_03705 and CA264_03710 are separated by 120 nucleotides CA264_03700: CA264_03700 - hypothetical protein, at 867,840 to 868,796 _03700 CA264_03705: CA264_03705 - AraC family transcriptional regulator, at 868,835 to 869,722 _03705 CA264_03710: CA264_03710 - AraC family transcriptional regulator, at 869,843 to 870,721 _03710 Position (kb) 868 869 870Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 867.835 kb on - strandat 867.837 kb on - strandat 867.842 kb on - strandat 867.842 kb on - strandat 867.886 kb on - strandat 867.888 kb on - strandat 867.975 kb on + strand, within CA264_03700at 867.975 kb on + strand, within CA264_03700at 867.976 kb on - strand, within CA264_03700at 867.982 kb on - strand, within CA264_03700at 868.005 kb on + strand, within CA264_03700at 868.053 kb on - strand, within CA264_03700at 868.053 kb on - strand, within CA264_03700at 868.064 kb on + strand, within CA264_03700at 868.064 kb on + strand, within CA264_03700at 868.065 kb on - strand, within CA264_03700at 868.071 kb on + strand, within CA264_03700at 868.086 kb on + strand, within CA264_03700at 868.086 kb on + strand, within CA264_03700at 868.087 kb on - strand, within CA264_03700at 868.150 kb on + strand, within CA264_03700at 868.161 kb on + strand, within CA264_03700at 868.181 kb on + strand, within CA264_03700at 868.182 kb on - strand, within CA264_03700at 868.331 kb on - strand, within CA264_03700at 868.432 kb on + strand, within CA264_03700at 868.433 kb on - strand, within CA264_03700at 868.452 kb on + strand, within CA264_03700at 868.470 kb on - strand, within CA264_03700at 868.532 kb on - strand, within CA264_03700at 868.579 kb on - strand, within CA264_03700at 868.731 kb on - strandat 868.731 kb on - strandat 868.731 kb on - strandat 868.731 kb on - strandat 868.752 kb on + strandat 868.765 kb on - strandat 868.803 kb on + strandat 868.819 kb on + strandat 868.819 kb on + strandat 868.867 kb on + strandat 868.890 kb on - strandat 868.890 kb on - strandat 868.938 kb on + strand, within CA264_03705at 868.979 kb on - strand, within CA264_03705at 869.220 kb on - strand, within CA264_03705at 869.256 kb on + strand, within CA264_03705at 869.257 kb on - strand, within CA264_03705at 869.262 kb on + strand, within CA264_03705at 869.263 kb on - strand, within CA264_03705at 869.314 kb on + strand, within CA264_03705at 869.315 kb on - strand, within CA264_03705at 869.345 kb on + strand, within CA264_03705at 869.345 kb on + strand, within CA264_03705at 869.346 kb on - strand, within CA264_03705at 869.346 kb on - strand, within CA264_03705at 869.346 kb on - strand, within CA264_03705at 869.368 kb on - strand, within CA264_03705at 869.379 kb on + strand, within CA264_03705at 869.552 kb on + strand, within CA264_03705at 869.553 kb on - strand, within CA264_03705at 869.553 kb on - strand, within CA264_03705at 869.586 kb on + strand, within CA264_03705at 869.587 kb on - strand, within CA264_03705at 869.587 kb on - strand, within CA264_03705at 869.640 kb on + strandat 869.681 kb on + strandat 869.681 kb on + strandat 869.784 kb on + strandat 869.844 kb on + strandat 869.910 kb on + strandat 870.003 kb on + strand, within CA264_03710at 870.008 kb on + strand, within CA264_03710at 870.009 kb on - strand, within CA264_03710at 870.009 kb on - strand, within CA264_03710at 870.077 kb on + strand, within CA264_03710at 870.088 kb on + strand, within CA264_03710at 870.091 kb on - strand, within CA264_03710at 870.218 kb on - strand, within CA264_03710at 870.306 kb on - strand, within CA264_03710at 870.522 kb on + strand, within CA264_03710at 870.522 kb on + strand, within CA264_03710at 870.564 kb on - strand, within CA264_03710at 870.564 kb on - strand, within CA264_03710at 870.579 kb on + strand, within CA264_03710at 870.643 kb on + strandat 870.644 kb on - strandat 870.648 kb on + strandat 870.648 kb on + strandat 870.655 kb on - strandat 870.696 kb on + strandat 870.721 kb on + strandat 870.722 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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867,835 - +0.6
867,837 - +0.1
867,842 - -0.9
867,842 - +0.5
867,886 - -2.4
867,888 - +1.0
867,975 + CA264_03700 0.14 +0.6
867,975 + CA264_03700 0.14 +0.6
867,976 - CA264_03700 0.14 +0.1
867,982 - CA264_03700 0.15 -0.2
868,005 + CA264_03700 0.17 +0.9
868,053 - CA264_03700 0.22 -1.0
868,053 - CA264_03700 0.22 -0.4
868,064 + CA264_03700 0.23 +0.3
868,064 + CA264_03700 0.23 +0.9
868,065 - CA264_03700 0.24 +0.7
868,071 + CA264_03700 0.24 -0.3
868,086 + CA264_03700 0.26 +0.2
868,086 + CA264_03700 0.26 +0.6
868,087 - CA264_03700 0.26 +0.6
868,150 + CA264_03700 0.32 -1.2
868,161 + CA264_03700 0.34 +0.6
868,181 + CA264_03700 0.36 +1.0
868,182 - CA264_03700 0.36 +0.8
868,331 - CA264_03700 0.51 -3.1
868,432 + CA264_03700 0.62 -0.4
868,433 - CA264_03700 0.62 +0.8
868,452 + CA264_03700 0.64 +0.3
868,470 - CA264_03700 0.66 -0.1
868,532 - CA264_03700 0.72 +1.0
868,579 - CA264_03700 0.77 +0.3
868,731 - +0.0
868,731 - +0.1
868,731 - -0.3
868,731 - +0.8
868,752 + -1.1
868,765 - +0.1
868,803 + +0.0
868,819 + +0.9
868,819 + +0.3
868,867 + +0.8
868,890 - +0.1
868,890 - +1.6
868,938 + CA264_03705 0.12 -0.6
868,979 - CA264_03705 0.16 -0.2
869,220 - CA264_03705 0.43 -0.2
869,256 + CA264_03705 0.47 -1.4
869,257 - CA264_03705 0.48 -0.1
869,262 + CA264_03705 0.48 -1.0
869,263 - CA264_03705 0.48 +0.2
869,314 + CA264_03705 0.54 +0.6
869,315 - CA264_03705 0.54 -1.1
869,345 + CA264_03705 0.57 +0.1
869,345 + CA264_03705 0.57 -0.6
869,346 - CA264_03705 0.58 -0.4
869,346 - CA264_03705 0.58 -1.4
869,346 - CA264_03705 0.58 -0.8
869,368 - CA264_03705 0.60 -0.7
869,379 + CA264_03705 0.61 -0.6
869,552 + CA264_03705 0.81 -0.8
869,553 - CA264_03705 0.81 -0.4
869,553 - CA264_03705 0.81 -0.4
869,586 + CA264_03705 0.85 +0.6
869,587 - CA264_03705 0.85 -0.4
869,587 - CA264_03705 0.85 -0.6
869,640 + +0.7
869,681 + +0.2
869,681 + -0.7
869,784 + -0.2
869,844 + -0.0
869,910 + +0.3
870,003 + CA264_03710 0.18 +0.6
870,008 + CA264_03710 0.19 -0.8
870,009 - CA264_03710 0.19 -0.2
870,009 - CA264_03710 0.19 +0.2
870,077 + CA264_03710 0.27 +1.2
870,088 + CA264_03710 0.28 -0.1
870,091 - CA264_03710 0.28 +0.0
870,218 - CA264_03710 0.43 -0.0
870,306 - CA264_03710 0.53 -0.0
870,522 + CA264_03710 0.77 -0.4
870,522 + CA264_03710 0.77 +0.1
870,564 - CA264_03710 0.82 +0.2
870,564 - CA264_03710 0.82 +0.2
870,579 + CA264_03710 0.84 +0.6
870,643 + +0.6
870,644 - +1.8
870,648 + +0.6
870,648 + +0.0
870,655 - +1.2
870,696 + -0.3
870,721 + -0.1
870,722 - -0.3

Or see this region's nucleotide sequence