Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03535

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03530 and CA264_03535 are separated by 462 nucleotidesCA264_03535 and CA264_03540 are separated by 75 nucleotides CA264_03530: CA264_03530 - hypothetical protein, at 821,900 to 822,157 _03530 CA264_03535: CA264_03535 - short-chain dehydrogenase/reductase, at 822,620 to 823,462 _03535 CA264_03540: CA264_03540 - AraC family transcriptional regulator, at 823,538 to 824,446 _03540 Position (kb) 822 823 824Strain fitness (log2 ratio) -2 -1 0 1 2at 821.677 kb on + strandat 821.699 kb on + strandat 821.700 kb on - strandat 821.700 kb on - strandat 821.701 kb on + strandat 821.702 kb on - strandat 821.754 kb on + strandat 821.754 kb on + strandat 821.755 kb on - strandat 821.831 kb on + strandat 821.832 kb on - strandat 821.832 kb on - strandat 821.857 kb on - strandat 821.866 kb on - strandat 821.915 kb on - strandat 821.916 kb on + strandat 821.917 kb on - strandat 821.917 kb on - strandat 821.938 kb on - strand, within CA264_03530at 821.972 kb on - strand, within CA264_03530at 821.991 kb on + strand, within CA264_03530at 822.019 kb on - strand, within CA264_03530at 822.019 kb on - strand, within CA264_03530at 822.127 kb on - strand, within CA264_03530at 822.127 kb on - strand, within CA264_03530at 822.143 kb on + strandat 822.144 kb on - strandat 822.144 kb on - strandat 822.177 kb on + strandat 822.177 kb on + strandat 822.326 kb on - strandat 822.394 kb on + strandat 822.434 kb on + strandat 822.434 kb on + strandat 822.440 kb on + strandat 822.440 kb on + strandat 822.441 kb on - strandat 822.488 kb on - strandat 822.537 kb on + strandat 822.537 kb on + strandat 822.537 kb on + strandat 822.537 kb on + strandat 822.538 kb on - strandat 822.538 kb on - strandat 822.538 kb on - strandat 822.540 kb on - strandat 822.540 kb on - strandat 822.540 kb on - strandat 822.580 kb on - strandat 822.585 kb on - strandat 822.653 kb on - strandat 822.654 kb on + strandat 822.655 kb on - strandat 822.655 kb on - strandat 822.655 kb on - strandat 822.706 kb on - strand, within CA264_03535at 822.706 kb on - strand, within CA264_03535at 822.755 kb on + strand, within CA264_03535at 822.755 kb on + strand, within CA264_03535at 822.756 kb on - strand, within CA264_03535at 822.756 kb on - strand, within CA264_03535at 822.761 kb on + strand, within CA264_03535at 822.762 kb on - strand, within CA264_03535at 822.834 kb on - strand, within CA264_03535at 822.862 kb on + strand, within CA264_03535at 822.925 kb on - strand, within CA264_03535at 822.935 kb on + strand, within CA264_03535at 822.942 kb on - strand, within CA264_03535at 822.979 kb on + strand, within CA264_03535at 822.980 kb on - strand, within CA264_03535at 823.011 kb on + strand, within CA264_03535at 823.015 kb on + strand, within CA264_03535at 823.016 kb on - strand, within CA264_03535at 823.029 kb on + strand, within CA264_03535at 823.070 kb on - strand, within CA264_03535at 823.091 kb on + strand, within CA264_03535at 823.091 kb on + strand, within CA264_03535at 823.092 kb on - strand, within CA264_03535at 823.096 kb on - strand, within CA264_03535at 823.133 kb on + strand, within CA264_03535at 823.145 kb on - strand, within CA264_03535at 823.157 kb on + strand, within CA264_03535at 823.157 kb on + strand, within CA264_03535at 823.210 kb on + strand, within CA264_03535at 823.214 kb on + strand, within CA264_03535at 823.214 kb on + strand, within CA264_03535at 823.214 kb on + strandat 823.215 kb on - strand, within CA264_03535at 823.227 kb on - strand, within CA264_03535at 823.227 kb on - strand, within CA264_03535at 823.227 kb on - strand, within CA264_03535at 823.268 kb on + strand, within CA264_03535at 823.269 kb on - strand, within CA264_03535at 823.445 kb on + strandat 823.477 kb on - strandat 823.493 kb on + strandat 823.534 kb on + strandat 823.535 kb on - strandat 823.535 kb on - strandat 823.535 kb on - strandat 823.549 kb on + strandat 823.568 kb on - strandat 823.709 kb on - strand, within CA264_03540at 823.874 kb on + strand, within CA264_03540at 823.875 kb on - strand, within CA264_03540at 823.875 kb on - strand, within CA264_03540at 823.936 kb on + strand, within CA264_03540at 823.937 kb on - strand, within CA264_03540at 823.937 kb on - strand, within CA264_03540at 823.977 kb on + strand, within CA264_03540at 823.977 kb on + strand, within CA264_03540at 823.978 kb on - strand, within CA264_03540at 823.978 kb on - strand, within CA264_03540at 823.988 kb on - strand, within CA264_03540at 823.990 kb on - strand, within CA264_03540at 823.990 kb on - strand, within CA264_03540at 823.993 kb on + strand, within CA264_03540at 823.994 kb on - strand, within CA264_03540at 823.994 kb on - strand, within CA264_03540at 823.994 kb on - strand, within CA264_03540at 824.097 kb on + strand, within CA264_03540at 824.098 kb on - strand, within CA264_03540at 824.098 kb on - strand, within CA264_03540at 824.098 kb on - strand, within CA264_03540at 824.185 kb on + strand, within CA264_03540at 824.187 kb on + strand, within CA264_03540at 824.228 kb on + strand, within CA264_03540at 824.228 kb on + strand, within CA264_03540at 824.250 kb on + strand, within CA264_03540at 824.251 kb on - strand, within CA264_03540at 824.287 kb on + strand, within CA264_03540at 824.314 kb on + strand, within CA264_03540at 824.314 kb on + strand, within CA264_03540at 824.314 kb on + strand, within CA264_03540at 824.315 kb on - strand, within CA264_03540at 824.447 kb on - strandat 824.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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821,677 + +0.1
821,699 + +0.3
821,700 - -0.5
821,700 - +1.1
821,701 + -0.2
821,702 - +0.3
821,754 + +0.6
821,754 + -1.0
821,755 - -0.1
821,831 + -1.4
821,832 - +1.0
821,832 - +0.2
821,857 - -0.8
821,866 - -1.0
821,915 - +1.4
821,916 + -0.4
821,917 - -0.4
821,917 - -0.6
821,938 - CA264_03530 0.15 +1.0
821,972 - CA264_03530 0.28 +0.2
821,991 + CA264_03530 0.35 -0.6
822,019 - CA264_03530 0.46 -0.0
822,019 - CA264_03530 0.46 +0.1
822,127 - CA264_03530 0.88 +0.1
822,127 - CA264_03530 0.88 -0.4
822,143 + -0.4
822,144 - +0.0
822,144 - +0.1
822,177 + +1.3
822,177 + -0.5
822,326 - -0.1
822,394 + -2.7
822,434 + -0.0
822,434 + +0.3
822,440 + +0.1
822,440 + -0.1
822,441 - -0.3
822,488 - +0.6
822,537 + +0.5
822,537 + -0.7
822,537 + +1.0
822,537 + +0.1
822,538 - -1.2
822,538 - -0.8
822,538 - -0.7
822,540 - +0.7
822,540 - -0.0
822,540 - -0.6
822,580 - +1.2
822,585 - -2.4
822,653 - +0.8
822,654 + +1.2
822,655 - -1.5
822,655 - -0.1
822,655 - +1.2
822,706 - CA264_03535 0.10 +0.4
822,706 - CA264_03535 0.10 +0.1
822,755 + CA264_03535 0.16 -0.6
822,755 + CA264_03535 0.16 +0.8
822,756 - CA264_03535 0.16 -0.3
822,756 - CA264_03535 0.16 +0.2
822,761 + CA264_03535 0.17 +0.8
822,762 - CA264_03535 0.17 +0.2
822,834 - CA264_03535 0.25 +0.6
822,862 + CA264_03535 0.29 -0.5
822,925 - CA264_03535 0.36 -0.5
822,935 + CA264_03535 0.37 -0.7
822,942 - CA264_03535 0.38 -1.3
822,979 + CA264_03535 0.43 -0.2
822,980 - CA264_03535 0.43 +0.2
823,011 + CA264_03535 0.46 -1.9
823,015 + CA264_03535 0.47 -0.0
823,016 - CA264_03535 0.47 -1.2
823,029 + CA264_03535 0.49 +0.0
823,070 - CA264_03535 0.53 -0.2
823,091 + CA264_03535 0.56 -0.7
823,091 + CA264_03535 0.56 +0.6
823,092 - CA264_03535 0.56 +0.2
823,096 - CA264_03535 0.56 -0.1
823,133 + CA264_03535 0.61 +0.2
823,145 - CA264_03535 0.62 +0.4
823,157 + CA264_03535 0.64 +0.5
823,157 + CA264_03535 0.64 -0.0
823,210 + CA264_03535 0.70 -2.0
823,214 + CA264_03535 0.70 +0.3
823,214 + CA264_03535 0.70 -0.4
823,214 + +0.6
823,215 - CA264_03535 0.71 -2.4
823,227 - CA264_03535 0.72 -1.2
823,227 - CA264_03535 0.72 -1.2
823,227 - CA264_03535 0.72 -0.3
823,268 + CA264_03535 0.77 -1.4
823,269 - CA264_03535 0.77 -0.3
823,445 + +0.8
823,477 - +0.6
823,493 + -0.5
823,534 + +0.4
823,535 - +0.6
823,535 - -0.1
823,535 - +0.8
823,549 + -2.6
823,568 - -0.2
823,709 - CA264_03540 0.19 -0.0
823,874 + CA264_03540 0.37 +0.2
823,875 - CA264_03540 0.37 +1.0
823,875 - CA264_03540 0.37 +0.2
823,936 + CA264_03540 0.44 -0.0
823,937 - CA264_03540 0.44 +0.4
823,937 - CA264_03540 0.44 -0.0
823,977 + CA264_03540 0.48 -1.0
823,977 + CA264_03540 0.48 +1.3
823,978 - CA264_03540 0.48 -1.0
823,978 - CA264_03540 0.48 -0.0
823,988 - CA264_03540 0.50 +2.6
823,990 - CA264_03540 0.50 -0.7
823,990 - CA264_03540 0.50 +0.8
823,993 + CA264_03540 0.50 -1.3
823,994 - CA264_03540 0.50 +0.0
823,994 - CA264_03540 0.50 -0.1
823,994 - CA264_03540 0.50 -0.2
824,097 + CA264_03540 0.61 +1.9
824,098 - CA264_03540 0.62 -0.2
824,098 - CA264_03540 0.62 -0.6
824,098 - CA264_03540 0.62 +0.4
824,185 + CA264_03540 0.71 +0.7
824,187 + CA264_03540 0.71 +0.3
824,228 + CA264_03540 0.76 +0.6
824,228 + CA264_03540 0.76 -0.3
824,250 + CA264_03540 0.78 +0.4
824,251 - CA264_03540 0.78 +0.2
824,287 + CA264_03540 0.82 +0.9
824,314 + CA264_03540 0.85 -1.7
824,314 + CA264_03540 0.85 -0.9
824,314 + CA264_03540 0.85 +0.2
824,315 - CA264_03540 0.85 +0.8
824,447 - +1.6
824,453 - -0.1

Or see this region's nucleotide sequence