Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02555

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_02550 and CA264_02555 are separated by 633 nucleotidesCA264_02555 and CA264_02560 are separated by 129 nucleotides CA264_02550: CA264_02550 - phosphoadenosine phosphosulfate reductase, at 595,891 to 596,610 _02550 CA264_02555: CA264_02555 - hypothetical protein, at 597,244 to 597,963 _02555 CA264_02560: CA264_02560 - DUF4153 domain-containing protein, at 598,093 to 599,337 _02560 Position (kb) 597 598Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 596.615 kb on + strandat 596.623 kb on - strandat 596.623 kb on - strandat 596.667 kb on + strandat 596.667 kb on + strandat 596.669 kb on + strandat 596.670 kb on - strandat 596.708 kb on - strandat 596.723 kb on + strandat 596.723 kb on + strandat 596.789 kb on + strandat 596.790 kb on - strandat 596.904 kb on + strandat 596.905 kb on - strandat 596.905 kb on - strandat 596.912 kb on + strandat 596.913 kb on - strandat 596.913 kb on - strandat 596.975 kb on - strandat 596.980 kb on - strandat 597.010 kb on - strandat 597.115 kb on + strandat 597.190 kb on + strandat 597.271 kb on + strandat 597.376 kb on + strand, within CA264_02555at 597.467 kb on + strand, within CA264_02555at 597.467 kb on + strand, within CA264_02555at 597.500 kb on + strand, within CA264_02555at 597.500 kb on + strand, within CA264_02555at 597.500 kb on + strand, within CA264_02555at 597.501 kb on - strand, within CA264_02555at 597.501 kb on - strand, within CA264_02555at 597.501 kb on - strand, within CA264_02555at 597.525 kb on - strand, within CA264_02555at 597.612 kb on - strand, within CA264_02555at 597.659 kb on + strand, within CA264_02555at 597.660 kb on - strand, within CA264_02555at 597.664 kb on + strand, within CA264_02555at 597.665 kb on - strand, within CA264_02555at 597.717 kb on - strand, within CA264_02555at 597.796 kb on + strand, within CA264_02555at 597.797 kb on - strand, within CA264_02555at 597.841 kb on - strand, within CA264_02555at 597.846 kb on - strand, within CA264_02555at 597.903 kb on - strandat 597.910 kb on - strandat 597.952 kb on + strandat 597.953 kb on - strandat 597.953 kb on - strandat 597.953 kb on - strandat 597.996 kb on + strandat 598.098 kb on + strandat 598.099 kb on - strandat 598.099 kb on - strandat 598.163 kb on + strandat 598.173 kb on + strandat 598.173 kb on + strandat 598.183 kb on + strandat 598.183 kb on + strandat 598.183 kb on + strandat 598.184 kb on - strandat 598.349 kb on - strand, within CA264_02560at 598.354 kb on + strand, within CA264_02560at 598.355 kb on - strand, within CA264_02560at 598.355 kb on - strand, within CA264_02560at 598.360 kb on + strand, within CA264_02560at 598.363 kb on + strand, within CA264_02560at 598.443 kb on + strand, within CA264_02560at 598.500 kb on - strand, within CA264_02560at 598.517 kb on + strand, within CA264_02560at 598.535 kb on + strand, within CA264_02560at 598.535 kb on + strand, within CA264_02560at 598.582 kb on - strand, within CA264_02560at 598.601 kb on - strand, within CA264_02560at 598.673 kb on + strand, within CA264_02560at 598.674 kb on - strand, within CA264_02560at 598.682 kb on + strand, within CA264_02560at 598.684 kb on + strand, within CA264_02560at 598.684 kb on + strand, within CA264_02560at 598.717 kb on + strand, within CA264_02560at 598.761 kb on + strand, within CA264_02560at 598.761 kb on + strand, within CA264_02560at 598.762 kb on - strand, within CA264_02560at 598.803 kb on - strand, within CA264_02560at 598.820 kb on + strand, within CA264_02560at 598.845 kb on - strand, within CA264_02560at 598.845 kb on - strand, within CA264_02560at 598.905 kb on + strand, within CA264_02560at 598.906 kb on - strand, within CA264_02560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
596,615 + -1.1
596,623 - -0.5
596,623 - -0.1
596,667 + -1.4
596,667 + -0.0
596,669 + +1.2
596,670 - -1.4
596,708 - -0.8
596,723 + +0.4
596,723 + -1.0
596,789 + +0.6
596,790 - +1.3
596,904 + -1.8
596,905 - +2.5
596,905 - -0.1
596,912 + +0.4
596,913 - -0.0
596,913 - -0.2
596,975 - +1.6
596,980 - +0.0
597,010 - +0.1
597,115 + +0.6
597,190 + -2.8
597,271 + +0.0
597,376 + CA264_02555 0.18 +1.6
597,467 + CA264_02555 0.31 -1.4
597,467 + CA264_02555 0.31 +0.1
597,500 + CA264_02555 0.36 +0.6
597,500 + CA264_02555 0.36 -0.1
597,500 + CA264_02555 0.36 -0.0
597,501 - CA264_02555 0.36 +0.9
597,501 - CA264_02555 0.36 -0.2
597,501 - CA264_02555 0.36 -0.5
597,525 - CA264_02555 0.39 +0.6
597,612 - CA264_02555 0.51 -0.4
597,659 + CA264_02555 0.58 +0.1
597,660 - CA264_02555 0.58 -0.1
597,664 + CA264_02555 0.58 +0.3
597,665 - CA264_02555 0.58 -0.5
597,717 - CA264_02555 0.66 -0.4
597,796 + CA264_02555 0.77 +0.3
597,797 - CA264_02555 0.77 +0.3
597,841 - CA264_02555 0.83 -0.9
597,846 - CA264_02555 0.84 +1.8
597,903 - +0.3
597,910 - -0.0
597,952 + -0.3
597,953 - -0.7
597,953 - +1.4
597,953 - -0.2
597,996 + +0.4
598,098 + +1.8
598,099 - -1.7
598,099 - +0.1
598,163 + -2.2
598,173 + +1.6
598,173 + -0.4
598,183 + +0.1
598,183 + -0.7
598,183 + -0.4
598,184 - +0.2
598,349 - CA264_02560 0.21 -1.4
598,354 + CA264_02560 0.21 -0.4
598,355 - CA264_02560 0.21 -0.3
598,355 - CA264_02560 0.21 +0.1
598,360 + CA264_02560 0.21 -0.6
598,363 + CA264_02560 0.22 +0.0
598,443 + CA264_02560 0.28 +0.6
598,500 - CA264_02560 0.33 +0.3
598,517 + CA264_02560 0.34 +0.3
598,535 + CA264_02560 0.36 -0.9
598,535 + CA264_02560 0.36 -0.1
598,582 - CA264_02560 0.39 -0.8
598,601 - CA264_02560 0.41 -0.5
598,673 + CA264_02560 0.47 +0.3
598,674 - CA264_02560 0.47 -0.0
598,682 + CA264_02560 0.47 -0.9
598,684 + CA264_02560 0.47 +0.7
598,684 + CA264_02560 0.47 -0.5
598,717 + CA264_02560 0.50 -1.4
598,761 + CA264_02560 0.54 -0.2
598,761 + CA264_02560 0.54 -1.7
598,762 - CA264_02560 0.54 +0.0
598,803 - CA264_02560 0.57 +0.6
598,820 + CA264_02560 0.58 +0.0
598,845 - CA264_02560 0.60 +1.6
598,845 - CA264_02560 0.60 +0.1
598,905 + CA264_02560 0.65 -0.2
598,906 - CA264_02560 0.65 -0.4

Or see this region's nucleotide sequence