Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01550 and CA264_01555 are separated by 4 nucleotides CA264_01555 and CA264_01560 are separated by 220 nucleotides
CA264_01550: CA264_01550 - aminotransferase, at 366,039 to 367,220
_01550
CA264_01555: CA264_01555 - hypothetical protein, at 367,225 to 368,091
_01555
CA264_01560: CA264_01560 - hypothetical protein, at 368,312 to 369,418
_01560
Position (kb) 367
368
369 Strain fitness (log2 ratio) -2
-1
0
1
2 at 366.285 kb on + strand, within CA264_01550 at 366.286 kb on - strand, within CA264_01550 at 366.329 kb on - strand, within CA264_01550 at 366.417 kb on + strand, within CA264_01550 at 366.439 kb on - strand, within CA264_01550 at 366.439 kb on - strand, within CA264_01550 at 366.498 kb on - strand, within CA264_01550 at 366.550 kb on - strand, within CA264_01550 at 366.551 kb on + strand, within CA264_01550 at 366.556 kb on - strand, within CA264_01550 at 366.642 kb on + strand, within CA264_01550 at 366.659 kb on + strand, within CA264_01550 at 366.698 kb on - strand, within CA264_01550 at 366.717 kb on + strand, within CA264_01550 at 366.718 kb on - strand, within CA264_01550 at 366.790 kb on + strand, within CA264_01550 at 366.896 kb on + strand, within CA264_01550 at 366.961 kb on + strand, within CA264_01550 at 366.962 kb on - strand, within CA264_01550 at 366.962 kb on - strand, within CA264_01550 at 366.973 kb on + strand, within CA264_01550 at 367.090 kb on - strand, within CA264_01550 at 367.090 kb on - strand, within CA264_01550 at 367.090 kb on - strand, within CA264_01550 at 367.175 kb on - strand at 367.208 kb on + strand at 367.212 kb on + strand at 367.212 kb on + strand at 367.213 kb on - strand at 367.260 kb on + strand at 367.271 kb on - strand at 367.386 kb on - strand, within CA264_01555 at 367.432 kb on + strand, within CA264_01555 at 367.568 kb on + strand, within CA264_01555 at 367.616 kb on + strand, within CA264_01555 at 367.617 kb on - strand, within CA264_01555 at 367.660 kb on + strand, within CA264_01555 at 367.661 kb on - strand, within CA264_01555 at 367.661 kb on - strand, within CA264_01555 at 367.785 kb on + strand, within CA264_01555 at 367.786 kb on - strand, within CA264_01555 at 367.786 kb on - strand, within CA264_01555 at 367.889 kb on + strand, within CA264_01555 at 368.005 kb on + strand at 368.148 kb on - strand at 368.150 kb on - strand at 368.173 kb on + strand at 368.174 kb on - strand at 368.180 kb on - strand at 368.215 kb on + strand at 368.216 kb on - strand at 368.285 kb on - strand at 368.308 kb on + strand at 368.334 kb on - strand at 368.411 kb on - strand at 368.412 kb on + strand at 368.413 kb on - strand at 368.413 kb on - strand at 368.478 kb on - strand, within CA264_01560 at 368.478 kb on - strand, within CA264_01560 at 368.594 kb on + strand, within CA264_01560 at 368.601 kb on + strand, within CA264_01560 at 368.621 kb on + strand, within CA264_01560
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 366,285 + CA264_01550 0.21 -0.4 366,286 - CA264_01550 0.21 +0.8 366,329 - CA264_01550 0.25 +1.2 366,417 + CA264_01550 0.32 +1.1 366,439 - CA264_01550 0.34 -0.4 366,439 - CA264_01550 0.34 +0.8 366,498 - CA264_01550 0.39 -0.3 366,550 - CA264_01550 0.43 -0.7 366,551 + CA264_01550 0.43 -0.0 366,556 - CA264_01550 0.44 -0.6 366,642 + CA264_01550 0.51 -1.3 366,659 + CA264_01550 0.52 -0.4 366,698 - CA264_01550 0.56 -0.2 366,717 + CA264_01550 0.57 -1.2 366,718 - CA264_01550 0.57 -1.1 366,790 + CA264_01550 0.64 +0.9 366,896 + CA264_01550 0.73 +0.6 366,961 + CA264_01550 0.78 -0.1 366,962 - CA264_01550 0.78 -0.6 366,962 - CA264_01550 0.78 +0.5 366,973 + CA264_01550 0.79 +0.2 367,090 - CA264_01550 0.89 +0.8 367,090 - CA264_01550 0.89 -0.8 367,090 - CA264_01550 0.89 -0.4 367,175 - -1.4 367,208 + -0.0 367,212 + +1.8 367,212 + -2.1 367,213 - -0.4 367,260 + +0.6 367,271 - -1.5 367,386 - CA264_01555 0.19 +0.7 367,432 + CA264_01555 0.24 -0.2 367,568 + CA264_01555 0.40 +0.4 367,616 + CA264_01555 0.45 -0.3 367,617 - CA264_01555 0.45 -1.0 367,660 + CA264_01555 0.50 -0.3 367,661 - CA264_01555 0.50 -0.6 367,661 - CA264_01555 0.50 -0.1 367,785 + CA264_01555 0.65 +0.7 367,786 - CA264_01555 0.65 -0.0 367,786 - CA264_01555 0.65 +0.7 367,889 + CA264_01555 0.77 -1.4 368,005 + -0.3 368,148 - +0.3 368,150 - -1.3 368,173 + -0.8 368,174 - +1.7 368,180 - +0.3 368,215 + +0.5 368,216 - +2.7 368,285 - -0.8 368,308 + +0.1 368,334 - +0.4 368,411 - +0.7 368,412 + +0.2 368,413 - +0.2 368,413 - +0.1 368,478 - CA264_01560 0.15 +0.7 368,478 - CA264_01560 0.15 -0.3 368,594 + CA264_01560 0.25 +0.6 368,601 + CA264_01560 0.26 +0.0 368,621 + CA264_01560 0.28 -1.0
Or see this region's nucleotide sequence