Strain Fitness in Agrobacterium fabrum C58 around Atu5465

Experiment: Betanin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5464 and Atu5465 are separated by 3 nucleotidesAtu5465 and Atu5466 are separated by 55 nucleotides Atu5464: Atu5464 - IclR family transcriptional regulator, at 456,691 to 458,373 Atu5464 Atu5465: Atu5465 - 3-oxoacyl-ACP reductase, at 458,377 to 459,138 Atu5465 Atu5466: Atu5466 - potassium uptake protein, at 459,194 to 461,107 Atu5466 Position (kb) 458 459 460Strain fitness (log2 ratio) -2 -1 0 1 2at 457.461 kb on - strand, within Atu5464at 457.520 kb on - strand, within Atu5464at 457.524 kb on + strand, within Atu5464at 457.532 kb on - strand, within Atu5464at 457.579 kb on + strand, within Atu5464at 457.586 kb on - strand, within Atu5464at 457.604 kb on + strand, within Atu5464at 457.606 kb on + strand, within Atu5464at 457.671 kb on - strand, within Atu5464at 457.729 kb on - strand, within Atu5464at 457.759 kb on + strand, within Atu5464at 457.759 kb on + strand, within Atu5464at 457.786 kb on + strand, within Atu5464at 457.868 kb on - strand, within Atu5464at 457.874 kb on - strand, within Atu5464at 457.980 kb on + strand, within Atu5464at 458.005 kb on - strand, within Atu5464at 458.093 kb on + strand, within Atu5464at 458.114 kb on + strand, within Atu5464at 458.224 kb on - strandat 458.250 kb on + strandat 458.282 kb on + strandat 458.282 kb on + strandat 458.369 kb on - strandat 458.436 kb on - strandat 458.436 kb on - strandat 458.499 kb on - strand, within Atu5465at 458.501 kb on + strand, within Atu5465at 458.501 kb on + strand, within Atu5465at 458.501 kb on + strand, within Atu5465at 458.501 kb on + strand, within Atu5465at 458.509 kb on - strand, within Atu5465at 458.509 kb on - strand, within Atu5465at 458.558 kb on - strand, within Atu5465at 458.558 kb on - strand, within Atu5465at 458.606 kb on + strand, within Atu5465at 458.606 kb on + strand, within Atu5465at 458.608 kb on - strand, within Atu5465at 458.670 kb on + strand, within Atu5465at 458.678 kb on - strand, within Atu5465at 458.741 kb on - strand, within Atu5465at 458.741 kb on - strand, within Atu5465at 458.793 kb on - strand, within Atu5465at 458.799 kb on + strand, within Atu5465at 458.823 kb on + strand, within Atu5465at 458.831 kb on - strand, within Atu5465at 458.925 kb on + strand, within Atu5465at 458.925 kb on + strand, within Atu5465at 458.933 kb on - strand, within Atu5465at 458.949 kb on + strand, within Atu5465at 458.954 kb on + strand, within Atu5465at 458.969 kb on - strand, within Atu5465at 459.004 kb on - strand, within Atu5465at 459.067 kb on + strandat 459.075 kb on - strandat 459.095 kb on + strandat 459.206 kb on - strandat 459.253 kb on - strandat 459.295 kb on - strandat 459.346 kb on + strandat 459.511 kb on - strand, within Atu5466at 459.524 kb on - strand, within Atu5466at 459.527 kb on + strand, within Atu5466at 459.572 kb on + strand, within Atu5466at 459.574 kb on + strand, within Atu5466at 459.605 kb on - strand, within Atu5466at 459.739 kb on + strand, within Atu5466at 459.747 kb on - strand, within Atu5466at 459.764 kb on - strand, within Atu5466at 459.954 kb on - strand, within Atu5466at 459.967 kb on - strand, within Atu5466at 459.998 kb on - strand, within Atu5466at 460.038 kb on + strand, within Atu5466at 460.038 kb on + strand, within Atu5466at 460.046 kb on - strand, within Atu5466at 460.048 kb on - strand, within Atu5466at 460.056 kb on - strand, within Atu5466at 460.083 kb on + strand, within Atu5466at 460.083 kb on + strand, within Atu5466at 460.083 kb on + strand, within Atu5466at 460.083 kb on + strand, within Atu5466at 460.083 kb on + strand, within Atu5466at 460.091 kb on - strand, within Atu5466at 460.091 kb on - strand, within Atu5466at 460.091 kb on - strand, within Atu5466at 460.130 kb on + strand, within Atu5466

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Per-strain Table

Position Strand Gene LocusTag Fraction Betanin (C)
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457,461 - Atu5464 0.46 +0.3
457,520 - Atu5464 0.49 -0.0
457,524 + Atu5464 0.49 +0.5
457,532 - Atu5464 0.50 -1.1
457,579 + Atu5464 0.53 +0.3
457,586 - Atu5464 0.53 +1.0
457,604 + Atu5464 0.54 +0.4
457,606 + Atu5464 0.54 -0.9
457,671 - Atu5464 0.58 -1.2
457,729 - Atu5464 0.62 -0.6
457,759 + Atu5464 0.63 +0.2
457,759 + Atu5464 0.63 +0.4
457,786 + Atu5464 0.65 +1.2
457,868 - Atu5464 0.70 -1.4
457,874 - Atu5464 0.70 -0.8
457,980 + Atu5464 0.77 -1.3
458,005 - Atu5464 0.78 -0.2
458,093 + Atu5464 0.83 -0.5
458,114 + Atu5464 0.85 -0.1
458,224 - +2.5
458,250 + -0.6
458,282 + +1.1
458,282 + -0.3
458,369 - +0.6
458,436 - -0.1
458,436 - +0.7
458,499 - Atu5465 0.16 -0.1
458,501 + Atu5465 0.16 +0.9
458,501 + Atu5465 0.16 +0.1
458,501 + Atu5465 0.16 -0.9
458,501 + Atu5465 0.16 +0.4
458,509 - Atu5465 0.17 -0.2
458,509 - Atu5465 0.17 -0.2
458,558 - Atu5465 0.24 +0.2
458,558 - Atu5465 0.24 +0.4
458,606 + Atu5465 0.30 +0.2
458,606 + Atu5465 0.30 -0.5
458,608 - Atu5465 0.30 -0.1
458,670 + Atu5465 0.38 +0.0
458,678 - Atu5465 0.40 -0.2
458,741 - Atu5465 0.48 +0.9
458,741 - Atu5465 0.48 -0.0
458,793 - Atu5465 0.55 -0.3
458,799 + Atu5465 0.55 -0.1
458,823 + Atu5465 0.59 -0.8
458,831 - Atu5465 0.60 +0.4
458,925 + Atu5465 0.72 +0.0
458,925 + Atu5465 0.72 -0.1
458,933 - Atu5465 0.73 +1.5
458,949 + Atu5465 0.75 +0.3
458,954 + Atu5465 0.76 -0.1
458,969 - Atu5465 0.78 +0.3
459,004 - Atu5465 0.82 -0.5
459,067 + +0.8
459,075 - +0.1
459,095 + +0.3
459,206 - +0.3
459,253 - -0.2
459,295 - +0.9
459,346 + -0.7
459,511 - Atu5466 0.17 -0.3
459,524 - Atu5466 0.17 +0.9
459,527 + Atu5466 0.17 +2.1
459,572 + Atu5466 0.20 -0.0
459,574 + Atu5466 0.20 +0.3
459,605 - Atu5466 0.21 +0.9
459,739 + Atu5466 0.28 +0.2
459,747 - Atu5466 0.29 +0.4
459,764 - Atu5466 0.30 +0.1
459,954 - Atu5466 0.40 +0.6
459,967 - Atu5466 0.40 +0.5
459,998 - Atu5466 0.42 +0.5
460,038 + Atu5466 0.44 +0.3
460,038 + Atu5466 0.44 +0.3
460,046 - Atu5466 0.45 -0.2
460,048 - Atu5466 0.45 -1.4
460,056 - Atu5466 0.45 -0.1
460,083 + Atu5466 0.46 +1.1
460,083 + Atu5466 0.46 +0.5
460,083 + Atu5466 0.46 +1.3
460,083 + Atu5466 0.46 -2.1
460,083 + Atu5466 0.46 -0.5
460,091 - Atu5466 0.47 -0.3
460,091 - Atu5466 0.47 -0.6
460,091 - Atu5466 0.47 +0.4
460,130 + Atu5466 0.49 +0.1

Or see this region's nucleotide sequence