Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4062

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
4,559,145	+		PfGW456L13_4061	0.29	-0.0
4,559,145	+		PfGW456L13_4061	0.29	-0.1
4,559,145	+		PfGW456L13_4061	0.29	+0.5
4,559,145	+		PfGW456L13_4061	0.29	-0.8
4,559,145	+		PfGW456L13_4061	0.29	-0.5
4,559,145	+		PfGW456L13_4061	0.29	-0.4
4,559,145	+		PfGW456L13_4061	0.29	-1.4
4,559,145	+		PfGW456L13_4061	0.29	-0.7
4,559,145	+		PfGW456L13_4061	0.29	+0.5
4,559,145	+		PfGW456L13_4061	0.29	+1.3
4,559,145	+		PfGW456L13_4061	0.29	-0.1
4,559,145	+		PfGW456L13_4061	0.29	-0.6
4,559,145	+		PfGW456L13_4061	0.29	+0.2
4,559,145	+		PfGW456L13_4061	0.29	-1.9
4,559,145	+		PfGW456L13_4061	0.29	+0.5
4,559,146	-		PfGW456L13_4061	0.29	-0.0
4,559,146	-		PfGW456L13_4061	0.29	-0.1
4,559,146	-		PfGW456L13_4061	0.29	-0.4
4,559,146	-		PfGW456L13_4061	0.29	-1.3
4,559,146	-		PfGW456L13_4061	0.29	-0.3
4,559,146	-		PfGW456L13_4061	0.29	-0.6
4,559,146	-		PfGW456L13_4061	0.29	+0.2
4,559,146	-		PfGW456L13_4061	0.29	+0.1
4,559,146	-		PfGW456L13_4061	0.29	+0.0
4,559,146	-		PfGW456L13_4061	0.29	+0.5
4,559,146	-		PfGW456L13_4061	0.29	+0.4
4,559,146	-		PfGW456L13_4061	0.29	-1.8
4,559,146	-		PfGW456L13_4061	0.29	+0.2
4,559,146	-		PfGW456L13_4061	0.29	+0.5
4,559,146	-		PfGW456L13_4061	0.29	+0.2
4,559,146	-		PfGW456L13_4061	0.29	+0.0
4,559,146	-		PfGW456L13_4061	0.29	+1.1
4,559,146	-		PfGW456L13_4061	0.29	+0.0
4,559,146	-		PfGW456L13_4061	0.29	-0.7
4,559,146	-		PfGW456L13_4061	0.29	+0.0
4,559,146	-		PfGW456L13_4061	0.29	+1.2
4,559,146	-		PfGW456L13_4061	0.29	-0.6
4,559,163	+		PfGW456L13_4061	0.30	+0.2
4,559,286	+		PfGW456L13_4061	0.39	+0.1
4,559,287	-		PfGW456L13_4061	0.39	-1.2
4,559,287	-		PfGW456L13_4061	0.39	-0.3
4,559,340	+		PfGW456L13_4061	0.43	-1.0
4,559,340	+		PfGW456L13_4061	0.43	-0.7
4,559,340	+		PfGW456L13_4061	0.43	+0.3
4,559,340	+		PfGW456L13_4061	0.43	+0.6
4,559,340	+		PfGW456L13_4061	0.43	-1.3
4,559,340	+		PfGW456L13_4061	0.43	+0.0
4,559,340	+		PfGW456L13_4061	0.43	+0.5
4,559,340	+		PfGW456L13_4061	0.43	+0.3
4,559,340	+		PfGW456L13_4061	0.43	-0.7
4,559,340	+		PfGW456L13_4061	0.43	-1.7
4,559,341	-		PfGW456L13_4061	0.43	-0.4
4,559,341	-		PfGW456L13_4061	0.43	-0.0
4,559,341	-		PfGW456L13_4061	0.43	-1.3
4,559,341	-		PfGW456L13_4061	0.43	-1.3
4,559,343	+		PfGW456L13_4061	0.43	+1.2
4,559,343	+		PfGW456L13_4061	0.43	-1.1
4,559,343	+		PfGW456L13_4061	0.43	-0.4
4,559,343	+		PfGW456L13_4061	0.43	-1.1
4,559,343	+		PfGW456L13_4061	0.43	-0.4
4,559,343	+		PfGW456L13_4061	0.43	-0.9
4,559,343	+		PfGW456L13_4061	0.43	+0.2
4,559,344	-		PfGW456L13_4061	0.43	+0.2
4,559,344	-		PfGW456L13_4061	0.43	+0.3
4,559,344	-		PfGW456L13_4061	0.43	+0.6
4,559,344	-		PfGW456L13_4061	0.43	+1.2
4,559,344	-		PfGW456L13_4061	0.43	-1.7
4,559,344	-		PfGW456L13_4061	0.43	-0.6
4,559,344	-		PfGW456L13_4061	0.43	-0.9
4,559,344	-		PfGW456L13_4061	0.43	-0.7
4,559,376	+		PfGW456L13_4061	0.46	-1.1
4,559,377	-		PfGW456L13_4061	0.46	-1.7
4,559,377	-		PfGW456L13_4061	0.46	+0.3
4,559,377	-				-0.7
4,559,377	-		PfGW456L13_4061	0.46	+0.3
4,559,377	-		PfGW456L13_4061	0.46	-0.5
4,559,377	-		PfGW456L13_4061	0.46	+2.4
4,559,424	+		PfGW456L13_4061	0.49	-0.7
4,559,424	+		PfGW456L13_4061	0.49	+0.2
4,559,424	+		PfGW456L13_4061	0.49	-0.5
4,559,424	+		PfGW456L13_4061	0.49	+0.7
4,559,424	+		PfGW456L13_4061	0.49	-0.2
4,559,425	-		PfGW456L13_4061	0.49	+0.6
4,559,425	-		PfGW456L13_4061	0.49	+0.1
4,559,425	-		PfGW456L13_4061	0.49	+0.4
4,559,425	-		PfGW456L13_4061	0.49	-0.2
4,559,425	-		PfGW456L13_4061	0.49	-1.1
4,559,454	+		PfGW456L13_4061	0.51	+0.1
4,559,455	-		PfGW456L13_4061	0.51	-0.7
4,559,570	+		PfGW456L13_4061	0.60	+0.9
4,559,570	+		PfGW456L13_4061	0.60	-0.7
4,559,571	-		PfGW456L13_4061	0.60	-1.5
4,559,571	-		PfGW456L13_4061	0.60	-1.2
4,559,685	+		PfGW456L13_4061	0.68	-0.7
4,559,685	+		PfGW456L13_4061	0.68	+0.4
4,559,686	-		PfGW456L13_4061	0.68	-1.4
4,559,710	+		PfGW456L13_4061	0.70	+0.5
4,559,710	+		PfGW456L13_4061	0.70	-0.3
4,559,710	+		PfGW456L13_4061	0.70	+0.0
4,559,711	-		PfGW456L13_4061	0.70	-0.1
4,559,760	+		PfGW456L13_4061	0.74	-0.1
4,559,760	+		PfGW456L13_4061	0.74	-0.0
4,559,760	+		PfGW456L13_4061	0.74	-0.8
4,559,760	+		PfGW456L13_4061	0.74	+0.9
4,559,760	+		PfGW456L13_4061	0.74	+0.0
4,559,760	+		PfGW456L13_4061	0.74	-0.6
4,559,761	-		PfGW456L13_4061	0.74	-0.1
4,559,761	-		PfGW456L13_4061	0.74	-0.5
4,559,761	-		PfGW456L13_4061	0.74	+0.2
4,559,761	-		PfGW456L13_4061	0.74	-1.2
4,559,761	-		PfGW456L13_4061	0.74	-0.5
4,559,857	-		PfGW456L13_4061	0.81	-3.1
4,559,857	-		PfGW456L13_4061	0.81	+0.4
4,559,857	-		PfGW456L13_4061	0.81	-1.0
4,559,857	-		PfGW456L13_4061	0.81	+0.0
4,559,934	+		PfGW456L13_4061	0.87	-0.2
4,559,934	+		PfGW456L13_4061	0.87	+1.4
4,559,934	+		PfGW456L13_4061	0.87	-0.2
4,560,031	-				-0.8
4,560,031	-				-0.1
4,560,037	+				+0.1
4,560,037	+				-0.4
4,560,038	-				+0.3
4,560,038	-				-0.9
4,560,038	-				+0.5
4,560,038	-				-0.0
4,560,038	-				+1.2
4,560,038	-				-0.7
4,560,097	+				-0.5
4,560,097	+				-0.1
4,560,097	+				-0.8
4,560,098	-				-0.1
4,560,287	+		PfGW456L13_4062	0.29	-1.0
4,560,287	+		PfGW456L13_4062	0.29	-0.2
4,560,287	+		PfGW456L13_4062	0.29	+0.2
4,560,288	-		PfGW456L13_4062	0.29	-1.1
4,560,288	-		PfGW456L13_4062	0.29	-0.9
4,560,288	-		PfGW456L13_4062	0.29	-0.4
4,560,288	-		PfGW456L13_4062	0.29	-0.4
4,560,289	+		PfGW456L13_4062	0.29	-0.6
4,560,290	-		PfGW456L13_4062	0.29	-0.6
4,560,356	+		PfGW456L13_4062	0.40	-0.2
4,560,357	-		PfGW456L13_4062	0.40	-0.6
4,560,357	-		PfGW456L13_4062	0.40	-0.1
4,560,485	+		PfGW456L13_4062	0.61	-0.8
4,560,485	+		PfGW456L13_4062	0.61	+0.4
4,560,486	-		PfGW456L13_4062	0.61	+0.6
4,560,486	-		PfGW456L13_4062	0.61	-0.6
4,560,486	-		PfGW456L13_4062	0.61	-0.2
4,560,486	-		PfGW456L13_4062	0.61	-0.7
4,560,486	-		PfGW456L13_4062	0.61	+0.2
4,560,608	+		PfGW456L13_4062	0.81	-0.4
4,560,608	+		PfGW456L13_4062	0.81	+1.1
4,560,608	+		PfGW456L13_4062	0.81	+0.3
4,560,609	-		PfGW456L13_4062	0.81	-1.1
4,560,609	-		PfGW456L13_4062	0.81	-0.5
4,560,609	-		PfGW456L13_4062	0.81	-0.4
4,560,680	+				+0.5
4,560,724	+				-0.8
4,560,725	-				+0.6
4,560,725	-				-1.1
4,560,725	-				+1.6
4,560,800	+		PfGW456L13_4063	0.35	+0.1
4,560,894	+		PfGW456L13_4063	0.89	+0.7
4,560,894	+		PfGW456L13_4063	0.89	+0.9
4,560,894	+		PfGW456L13_4063	0.89	+0.1
4,560,894	+		PfGW456L13_4063	0.89	+0.3
4,560,894	+		PfGW456L13_4063	0.89	-1.1
4,560,894	+		PfGW456L13_4063	0.89	+0.5
4,560,895	-				-0.6
4,560,914	+				-0.3
4,560,914	+				-1.3
4,560,914	+				-0.4
4,560,914	+				+0.2
4,560,914	+				-0.6
4,560,914	+				-0.4
4,560,915	-				-1.7
4,560,915	-				+1.9
4,560,915	-				+1.4
4,560,930	+				-0.7
4,560,930	+				+0.9
4,560,930	+				-0.2
4,560,931	-				-0.8
4,560,931	-				-0.3
4,560,931	-				-0.4
4,560,931	-				-1.0
4,560,931	-				-0.5
4,560,931	-				-0.7
4,560,931	-				-0.3
4,561,056	+		PfGW456L13_4064	0.15	+0.0
4,561,057	-		PfGW456L13_4064	0.15	-1.7
4,561,149	-		PfGW456L13_4064	0.25	-0.8
4,561,173	+		PfGW456L13_4064	0.27	+0.0
4,561,563	-		PfGW456L13_4064	0.67	-0.9
4,561,680	-		PfGW456L13_4064	0.79	-0.3