Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3118

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
3,489,247	+		PfGW456L13_3117	0.42	-0.2
3,489,247	+		PfGW456L13_3117	0.42	-0.2
3,489,258	+		PfGW456L13_3117	0.42	-0.2
3,489,258	+		PfGW456L13_3117	0.42	+0.2
3,489,301	-		PfGW456L13_3117	0.46	+0.3
3,489,301	-		PfGW456L13_3117	0.46	-0.0
3,489,309	+		PfGW456L13_3117	0.46	+1.0
3,489,314	+		PfGW456L13_3117	0.47	+0.7
3,489,330	+		PfGW456L13_3117	0.48	+0.5
3,489,593	+		PfGW456L13_3117	0.67	+1.0
3,489,768	+		PfGW456L13_3117	0.80	-0.3
3,489,769	-		PfGW456L13_3117	0.81	+1.5
3,489,894	+		PfGW456L13_3117	0.90	+0.2
3,489,895	-		PfGW456L13_3117	0.90	+0.1
3,489,953	+				+0.4
3,489,953	+				+0.7
3,489,953	+				+0.5
3,490,005	+				-0.3
3,490,007	+				-0.1
3,490,007	+				+0.6
3,490,007	+				-0.4
3,490,007	+				-0.3
3,490,008	-				+0.1
3,490,008	-				+0.3
3,490,008	-				-0.5
3,490,027	+				+0.5
3,490,027	+				-0.0
3,490,034	+				+0.8
3,490,055	-				-1.1
3,490,187	+		PfGW456L13_3118	0.14	-0.6
3,490,187	+		PfGW456L13_3118	0.14	+1.5
3,490,187	+		PfGW456L13_3118	0.14	+0.5
3,490,187	+		PfGW456L13_3118	0.14	+0.5
3,490,187	+		PfGW456L13_3118	0.14	+0.7
3,490,187	+		PfGW456L13_3118	0.14	+0.8
3,490,188	-		PfGW456L13_3118	0.14	+0.5
3,490,188	-		PfGW456L13_3118	0.14	+0.2
3,490,188	-		PfGW456L13_3118	0.14	+0.1
3,490,188	-		PfGW456L13_3118	0.14	+1.0
3,490,188	-		PfGW456L13_3118	0.14	-0.8
3,490,190	-		PfGW456L13_3118	0.14	+0.3
3,490,197	+		PfGW456L13_3118	0.15	-0.0
3,490,197	+		PfGW456L13_3118	0.15	+1.5
3,490,198	-		PfGW456L13_3118	0.15	+0.5
3,490,198	-		PfGW456L13_3118	0.15	+0.2
3,490,198	-		PfGW456L13_3118	0.15	+0.4
3,490,268	+		PfGW456L13_3118	0.22	-1.0
3,490,268	+		PfGW456L13_3118	0.22	+1.2
3,490,268	+		PfGW456L13_3118	0.22	+0.2
3,490,268	+		PfGW456L13_3118	0.22	-1.1
3,490,269	-		PfGW456L13_3118	0.22	+1.0
3,490,269	-		PfGW456L13_3118	0.22	-0.3
3,490,269	-		PfGW456L13_3118	0.22	+0.2
3,490,314	-		PfGW456L13_3118	0.27	+1.5
3,490,314	-		PfGW456L13_3118	0.27	-0.0
3,490,336	-		PfGW456L13_3118	0.30	-1.5
3,490,345	+		PfGW456L13_3118	0.30	+1.4
3,490,345	+		PfGW456L13_3118	0.30	-0.4
3,490,451	-		PfGW456L13_3118	0.42	-0.9
3,490,474	+		PfGW456L13_3118	0.44	+0.4
3,490,516	-		PfGW456L13_3118	0.49	-0.1
3,490,516	-		PfGW456L13_3118	0.49	+0.5
3,490,516	-		PfGW456L13_3118	0.49	+0.5
3,490,516	-		PfGW456L13_3118	0.49	+0.7
3,490,516	-		PfGW456L13_3118	0.49	+0.4
3,490,634	+		PfGW456L13_3118	0.61	-1.0
3,490,634	+		PfGW456L13_3118	0.61	-1.8
3,490,634	+		PfGW456L13_3118	0.61	-0.5
3,490,634	+		PfGW456L13_3118	0.61	+0.6
3,490,634	+		PfGW456L13_3118	0.61	+0.4
3,490,634	+		PfGW456L13_3118	0.61	+0.5
3,490,634	+		PfGW456L13_3118	0.61	+0.5
3,490,634	+		PfGW456L13_3118	0.61	-0.2
3,490,634	+		PfGW456L13_3118	0.61	-1.0
3,490,634	+				+0.5
3,490,634	+		PfGW456L13_3118	0.61	+0.2
3,490,635	-		PfGW456L13_3118	0.61	+1.0
3,490,635	-		PfGW456L13_3118	0.61	-0.2
3,490,635	-		PfGW456L13_3118	0.61	-2.0
3,490,635	-		PfGW456L13_3118	0.61	+1.0
3,490,635	-		PfGW456L13_3118	0.61	+0.6
3,490,635	-		PfGW456L13_3118	0.61	-1.3
3,490,635	-		PfGW456L13_3118	0.61	+0.5
3,490,635	-		PfGW456L13_3118	0.61	+2.1
3,490,635	-		PfGW456L13_3118	0.61	+0.7
3,490,635	-		PfGW456L13_3118	0.61	+0.9
3,490,637	+				+1.0
3,490,637	+		PfGW456L13_3118	0.61	+1.4
3,490,637	+		PfGW456L13_3118	0.61	-0.7
3,490,637	+		PfGW456L13_3118	0.61	-0.9
3,490,637	+		PfGW456L13_3118	0.61	+1.3
3,490,637	+		PfGW456L13_3118	0.61	+1.1
3,490,637	+		PfGW456L13_3118	0.61	+0.2
3,490,638	-		PfGW456L13_3118	0.62	+1.0
3,490,638	-		PfGW456L13_3118	0.62	+0.4
3,490,638	-		PfGW456L13_3118	0.62	-0.2
3,490,638	-		PfGW456L13_3118	0.62	-0.4
3,490,638	-		PfGW456L13_3118	0.62	-0.2
3,490,638	-		PfGW456L13_3118	0.62	-0.4
3,490,638	-		PfGW456L13_3118	0.62	+0.5
3,490,638	-		PfGW456L13_3118	0.62	+0.1
3,490,638	-		PfGW456L13_3118	0.62	+1.1
3,490,638	-		PfGW456L13_3118	0.62	+0.5
3,490,638	-		PfGW456L13_3118	0.62	+0.4
3,490,647	+		PfGW456L13_3118	0.63	+0.9
3,490,648	-		PfGW456L13_3118	0.63	+0.2
3,490,648	-		PfGW456L13_3118	0.63	-0.2
3,490,787	+		PfGW456L13_3118	0.77	-0.9
3,490,797	+		PfGW456L13_3118	0.78	-0.3
3,490,832	-		PfGW456L13_3118	0.82	+0.1
3,491,099	+				-0.0
3,491,099	+				-0.5
3,491,100	-				-1.1
3,491,100	-				-0.3
3,491,169	+		PfGW456L13_3119	0.13	+0.8
3,491,169	+		PfGW456L13_3119	0.13	-0.1
3,491,169	+		PfGW456L13_3119	0.13	+1.2
3,491,169	+		PfGW456L13_3119	0.13	-1.4
3,491,170	-		PfGW456L13_3119	0.14	-1.2
3,491,187	+		PfGW456L13_3119	0.16	+0.1
3,491,198	+		PfGW456L13_3119	0.18	+0.1
3,491,198	+		PfGW456L13_3119	0.18	-0.2
3,491,199	-		PfGW456L13_3119	0.18	-0.5
3,491,199	-		PfGW456L13_3119	0.18	+0.4
3,491,199	-		PfGW456L13_3119	0.18	+0.2
3,491,199	-		PfGW456L13_3119	0.18	+0.8
3,491,199	-		PfGW456L13_3119	0.18	+0.8
3,491,214	+		PfGW456L13_3119	0.21	+0.3
3,491,215	-		PfGW456L13_3119	0.21	-0.3
3,491,283	+		PfGW456L13_3119	0.32	-0.0
3,491,284	-		PfGW456L13_3119	0.32	-0.3
3,491,284	-		PfGW456L13_3119	0.32	-1.0
3,491,379	-		PfGW456L13_3119	0.48	-0.7
3,491,496	+		PfGW456L13_3119	0.67	-0.2
3,491,535	+		PfGW456L13_3119	0.73	+0.9
3,491,535	+		PfGW456L13_3119	0.73	+0.1
3,491,535	+		PfGW456L13_3119	0.73	-0.2
3,491,535	+		PfGW456L13_3119	0.73	+1.4
3,491,536	-		PfGW456L13_3119	0.73	+0.1
3,491,536	-		PfGW456L13_3119	0.73	+2.0
3,491,536	-		PfGW456L13_3119	0.73	-0.4
3,491,536	-		PfGW456L13_3119	0.73	+0.2
3,491,536	-		PfGW456L13_3119	0.73	-1.3
3,491,599	+		PfGW456L13_3119	0.83	+0.3
3,491,600	-		PfGW456L13_3119	0.84	+0.9
3,491,737	+				-0.8
3,491,738	-				-0.2
3,491,792	-				-0.4
3,491,821	-				-0.5
3,491,926	-				+1.0