Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1208

Experiment: nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1207 and PfGW456L13_1208 are separated by 73 nucleotidesPfGW456L13_1208 and PfGW456L13_1209 are separated by 68 nucleotides PfGW456L13_1207 - FIG00953890: hypothetical protein, at 1,347,210 to 1,348,199 _1207 PfGW456L13_1208 - Probable two-component sensor, near polyamine transporter, at 1,348,273 to 1,350,669 _1208 PfGW456L13_1209 - DNA-binding response regulator, LuxR family, near polyamine transporter, at 1,350,738 to 1,351,415 _1209 Position (kb) 1348 1349 1350 1351Strain fitness (log2 ratio) -2 -1 0 1at 1347.388 kb on + strand, within PfGW456L13_1207at 1347.388 kb on + strand, within PfGW456L13_1207at 1347.388 kb on + strand, within PfGW456L13_1207at 1347.388 kb on + strand, within PfGW456L13_1207at 1347.388 kb on + strand, within PfGW456L13_1207at 1347.388 kb on + strand, within PfGW456L13_1207at 1347.389 kb on - strand, within PfGW456L13_1207at 1347.389 kb on - strand, within PfGW456L13_1207at 1347.389 kb on - strand, within PfGW456L13_1207at 1347.389 kb on - strand, within PfGW456L13_1207at 1347.389 kb on - strand, within PfGW456L13_1207at 1347.389 kb on - strand, within PfGW456L13_1207at 1347.389 kb on - strand, within PfGW456L13_1207at 1347.514 kb on - strand, within PfGW456L13_1207at 1347.518 kb on - strand, within PfGW456L13_1207at 1347.518 kb on - strand, within PfGW456L13_1207at 1347.533 kb on - strand, within PfGW456L13_1207at 1347.563 kb on + strand, within PfGW456L13_1207at 1347.564 kb on - strand, within PfGW456L13_1207at 1347.678 kb on + strand, within PfGW456L13_1207at 1347.678 kb on + strand, within PfGW456L13_1207at 1347.821 kb on + strand, within PfGW456L13_1207at 1347.821 kb on + strand, within PfGW456L13_1207at 1347.821 kb on + strand, within PfGW456L13_1207at 1347.822 kb on - strand, within PfGW456L13_1207at 1347.822 kb on - strand, within PfGW456L13_1207at 1347.822 kb on - strand, within PfGW456L13_1207at 1347.822 kb on - strand, within PfGW456L13_1207at 1347.914 kb on + strand, within PfGW456L13_1207at 1347.915 kb on - strand, within PfGW456L13_1207at 1347.915 kb on - strand, within PfGW456L13_1207at 1347.929 kb on + strand, within PfGW456L13_1207at 1347.930 kb on - strand, within PfGW456L13_1207at 1348.046 kb on + strand, within PfGW456L13_1207at 1348.046 kb on + strand, within PfGW456L13_1207at 1348.046 kb on + strand, within PfGW456L13_1207at 1348.047 kb on - strand, within PfGW456L13_1207at 1348.047 kb on - strand, within PfGW456L13_1207at 1348.205 kb on - strandat 1348.249 kb on + strandat 1348.249 kb on + strandat 1348.250 kb on - strandat 1348.250 kb on - strandat 1348.250 kb on - strandat 1348.250 kb on - strandat 1348.438 kb on + strandat 1348.439 kb on - strandat 1348.439 kb on - strandat 1348.447 kb on + strandat 1348.448 kb on - strandat 1348.448 kb on - strandat 1348.448 kb on - strandat 1348.448 kb on - strandat 1348.651 kb on + strand, within PfGW456L13_1208at 1348.651 kb on + strand, within PfGW456L13_1208at 1348.651 kb on + strand, within PfGW456L13_1208at 1348.651 kb on + strand, within PfGW456L13_1208at 1348.651 kb on + strand, within PfGW456L13_1208at 1348.651 kb on + strand, within PfGW456L13_1208at 1348.651 kb on + strand, within PfGW456L13_1208at 1348.651 kb on + strand, within PfGW456L13_1208at 1348.652 kb on - strand, within PfGW456L13_1208at 1348.652 kb on - strand, within PfGW456L13_1208at 1348.652 kb on - strand, within PfGW456L13_1208at 1348.652 kb on - strand, within PfGW456L13_1208at 1348.652 kb on - strand, within PfGW456L13_1208at 1348.652 kb on - strand, within PfGW456L13_1208at 1348.652 kb on - strand, within PfGW456L13_1208at 1348.768 kb on + strand, within PfGW456L13_1208at 1348.768 kb on + strand, within PfGW456L13_1208at 1348.769 kb on - strand, within PfGW456L13_1208at 1348.769 kb on - strand, within PfGW456L13_1208at 1348.783 kb on + strand, within PfGW456L13_1208at 1348.784 kb on - strand, within PfGW456L13_1208at 1348.836 kb on - strand, within PfGW456L13_1208at 1348.858 kb on + strand, within PfGW456L13_1208at 1348.858 kb on + strand, within PfGW456L13_1208at 1348.858 kb on + strand, within PfGW456L13_1208at 1348.996 kb on - strand, within PfGW456L13_1208at 1349.071 kb on + strand, within PfGW456L13_1208at 1349.324 kb on - strand, within PfGW456L13_1208at 1349.557 kb on + strand, within PfGW456L13_1208at 1349.569 kb on + strand, within PfGW456L13_1208at 1349.569 kb on + strand, within PfGW456L13_1208at 1349.570 kb on - strand, within PfGW456L13_1208at 1349.713 kb on + strand, within PfGW456L13_1208at 1349.713 kb on + strand, within PfGW456L13_1208at 1349.713 kb on + strand, within PfGW456L13_1208at 1349.713 kb on + strand, within PfGW456L13_1208at 1349.713 kb on + strand, within PfGW456L13_1208at 1349.714 kb on - strand, within PfGW456L13_1208at 1349.714 kb on - strand, within PfGW456L13_1208at 1349.714 kb on - strand, within PfGW456L13_1208at 1349.714 kb on - strand, within PfGW456L13_1208at 1349.746 kb on + strand, within PfGW456L13_1208at 1349.818 kb on + strand, within PfGW456L13_1208at 1349.818 kb on + strand, within PfGW456L13_1208at 1349.819 kb on - strand, within PfGW456L13_1208at 1349.819 kb on - strand, within PfGW456L13_1208at 1349.950 kb on + strand, within PfGW456L13_1208at 1350.050 kb on + strand, within PfGW456L13_1208at 1350.050 kb on + strand, within PfGW456L13_1208at 1350.050 kb on + strand, within PfGW456L13_1208at 1350.051 kb on - strand, within PfGW456L13_1208at 1350.051 kb on - strand, within PfGW456L13_1208at 1350.051 kb on - strand, within PfGW456L13_1208at 1350.051 kb on - strand, within PfGW456L13_1208at 1350.051 kb on - strand, within PfGW456L13_1208at 1350.051 kb on - strand, within PfGW456L13_1208at 1350.161 kb on - strand, within PfGW456L13_1208at 1350.161 kb on - strand, within PfGW456L13_1208at 1350.184 kb on - strand, within PfGW456L13_1208at 1350.282 kb on + strand, within PfGW456L13_1208at 1350.283 kb on - strand, within PfGW456L13_1208at 1350.283 kb on - strand, within PfGW456L13_1208at 1350.453 kb on + strandat 1350.453 kb on + strandat 1350.453 kb on + strandat 1350.454 kb on - strandat 1350.454 kb on - strandat 1350.454 kb on - strandat 1350.454 kb on - strandat 1350.518 kb on + strandat 1350.638 kb on + strandat 1350.638 kb on + strandat 1350.638 kb on + strandat 1350.638 kb on + strandat 1350.639 kb on - strandat 1350.639 kb on - strandat 1350.730 kb on + strandat 1350.730 kb on + strandat 1350.730 kb on + strandat 1350.731 kb on - strandat 1350.796 kb on + strandat 1350.797 kb on - strandat 1350.917 kb on + strand, within PfGW456L13_1209at 1350.917 kb on + strand, within PfGW456L13_1209at 1350.918 kb on - strand, within PfGW456L13_1209at 1350.918 kb on - strand, within PfGW456L13_1209at 1350.918 kb on - strand, within PfGW456L13_1209at 1351.155 kb on + strand, within PfGW456L13_1209at 1351.155 kb on + strand, within PfGW456L13_1209at 1351.156 kb on - strand, within PfGW456L13_1209at 1351.156 kb on - strand, within PfGW456L13_1209at 1351.202 kb on + strand, within PfGW456L13_1209at 1351.389 kb on + strandat 1351.389 kb on + strandat 1351.389 kb on + strandat 1351.389 kb on + strandat 1351.389 kb on + strandat 1351.390 kb on - strandat 1351.390 kb on - strandat 1351.390 kb on - strandat 1351.390 kb on - strandat 1351.413 kb on + strandat 1351.414 kb on - strandat 1351.414 kb on - strandat 1351.414 kb on - strandat 1351.414 kb on - strandat 1351.428 kb on + strandat 1351.428 kb on + strandat 1351.429 kb on - strandat 1351.429 kb on - strandat 1351.538 kb on - strandat 1351.538 kb on - strandat 1351.538 kb on - strandat 1351.553 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 5 mM
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1,347,388 + PfGW456L13_1207 0.18 -1.6
1,347,388 + PfGW456L13_1207 0.18 +0.3
1,347,388 + PfGW456L13_1207 0.18 -0.2
1,347,388 + PfGW456L13_1207 0.18 +0.1
1,347,388 + PfGW456L13_1207 0.18 +0.5
1,347,388 + PfGW456L13_1207 0.18 +0.6
1,347,389 - PfGW456L13_1207 0.18 -1.1
1,347,389 - PfGW456L13_1207 0.18 -0.4
1,347,389 - PfGW456L13_1207 0.18 +0.3
1,347,389 - PfGW456L13_1207 0.18 -0.3
1,347,389 - PfGW456L13_1207 0.18 -0.5
1,347,389 - PfGW456L13_1207 0.18 +0.2
1,347,389 - PfGW456L13_1207 0.18 -0.3
1,347,514 - PfGW456L13_1207 0.31 -0.8
1,347,518 - PfGW456L13_1207 0.31 +0.7
1,347,518 - PfGW456L13_1207 0.31 +0.7
1,347,533 - PfGW456L13_1207 0.33 +0.4
1,347,563 + PfGW456L13_1207 0.36 +0.7
1,347,564 - PfGW456L13_1207 0.36 -0.3
1,347,678 + PfGW456L13_1207 0.47 +0.6
1,347,678 + PfGW456L13_1207 0.47 +0.4
1,347,821 + PfGW456L13_1207 0.62 -0.6
1,347,821 + PfGW456L13_1207 0.62 +0.8
1,347,821 + PfGW456L13_1207 0.62 -0.4
1,347,822 - PfGW456L13_1207 0.62 -0.4
1,347,822 - PfGW456L13_1207 0.62 -0.1
1,347,822 - PfGW456L13_1207 0.62 -0.1
1,347,822 - PfGW456L13_1207 0.62 -1.2
1,347,914 + PfGW456L13_1207 0.71 +0.9
1,347,915 - PfGW456L13_1207 0.71 +1.2
1,347,915 - PfGW456L13_1207 0.71 +1.1
1,347,929 + PfGW456L13_1207 0.73 -0.5
1,347,930 - PfGW456L13_1207 0.73 +0.1
1,348,046 + PfGW456L13_1207 0.84 -0.3
1,348,046 + PfGW456L13_1207 0.84 +0.1
1,348,046 + PfGW456L13_1207 0.84 -0.5
1,348,047 - PfGW456L13_1207 0.85 -1.2
1,348,047 - PfGW456L13_1207 0.85 -0.1
1,348,205 - +0.9
1,348,249 + -2.0
1,348,249 + +0.7
1,348,250 - +0.5
1,348,250 - -1.5
1,348,250 - -0.8
1,348,250 - -0.0
1,348,438 + +1.3
1,348,439 - -0.8
1,348,439 - -0.7
1,348,447 + -0.8
1,348,448 - -0.7
1,348,448 - -0.8
1,348,448 - +0.2
1,348,448 - +0.4
1,348,651 + PfGW456L13_1208 0.16 -0.0
1,348,651 + PfGW456L13_1208 0.16 -0.1
1,348,651 + PfGW456L13_1208 0.16 +0.7
1,348,651 + PfGW456L13_1208 0.16 +1.2
1,348,651 + PfGW456L13_1208 0.16 +0.8
1,348,651 + PfGW456L13_1208 0.16 +0.3
1,348,651 + PfGW456L13_1208 0.16 +0.3
1,348,651 + PfGW456L13_1208 0.16 -0.1
1,348,652 - PfGW456L13_1208 0.16 -0.6
1,348,652 - PfGW456L13_1208 0.16 -0.5
1,348,652 - PfGW456L13_1208 0.16 -0.0
1,348,652 - PfGW456L13_1208 0.16 +0.8
1,348,652 - PfGW456L13_1208 0.16 +0.3
1,348,652 - PfGW456L13_1208 0.16 -0.3
1,348,652 - PfGW456L13_1208 0.16 -0.3
1,348,768 + PfGW456L13_1208 0.21 +0.3
1,348,768 + PfGW456L13_1208 0.21 -1.4
1,348,769 - PfGW456L13_1208 0.21 -0.6
1,348,769 - PfGW456L13_1208 0.21 +0.2
1,348,783 + PfGW456L13_1208 0.21 -0.6
1,348,784 - PfGW456L13_1208 0.21 +0.7
1,348,836 - PfGW456L13_1208 0.23 -0.4
1,348,858 + PfGW456L13_1208 0.24 +0.7
1,348,858 + PfGW456L13_1208 0.24 -0.5
1,348,858 + PfGW456L13_1208 0.24 -0.0
1,348,996 - PfGW456L13_1208 0.30 -0.1
1,349,071 + PfGW456L13_1208 0.33 +1.0
1,349,324 - PfGW456L13_1208 0.44 -1.4
1,349,557 + PfGW456L13_1208 0.54 +0.4
1,349,569 + PfGW456L13_1208 0.54 +0.0
1,349,569 + PfGW456L13_1208 0.54 -0.0
1,349,570 - PfGW456L13_1208 0.54 +0.9
1,349,713 + PfGW456L13_1208 0.60 -0.8
1,349,713 + PfGW456L13_1208 0.60 +0.2
1,349,713 + PfGW456L13_1208 0.60 +0.6
1,349,713 + PfGW456L13_1208 0.60 +0.1
1,349,713 + PfGW456L13_1208 0.60 +0.8
1,349,714 - PfGW456L13_1208 0.60 +0.6
1,349,714 - PfGW456L13_1208 0.60 -0.2
1,349,714 - PfGW456L13_1208 0.60 -0.0
1,349,714 - PfGW456L13_1208 0.60 +0.0
1,349,746 + PfGW456L13_1208 0.61 -0.7
1,349,818 + PfGW456L13_1208 0.64 -0.4
1,349,818 + PfGW456L13_1208 0.64 +0.6
1,349,819 - PfGW456L13_1208 0.64 -0.1
1,349,819 - PfGW456L13_1208 0.64 +0.3
1,349,950 + PfGW456L13_1208 0.70 -0.5
1,350,050 + PfGW456L13_1208 0.74 +0.2
1,350,050 + PfGW456L13_1208 0.74 +0.5
1,350,050 + PfGW456L13_1208 0.74 +0.3
1,350,051 - PfGW456L13_1208 0.74 -0.1
1,350,051 - PfGW456L13_1208 0.74 -0.5
1,350,051 - PfGW456L13_1208 0.74 +0.1
1,350,051 - PfGW456L13_1208 0.74 -0.4
1,350,051 - PfGW456L13_1208 0.74 -0.6
1,350,051 - PfGW456L13_1208 0.74 +0.8
1,350,161 - PfGW456L13_1208 0.79 +0.7
1,350,161 - PfGW456L13_1208 0.79 +0.4
1,350,184 - PfGW456L13_1208 0.80 -0.6
1,350,282 + PfGW456L13_1208 0.84 -0.6
1,350,283 - PfGW456L13_1208 0.84 +0.2
1,350,283 - PfGW456L13_1208 0.84 -0.6
1,350,453 + -1.2
1,350,453 + +0.0
1,350,453 + -0.5
1,350,454 - -0.3
1,350,454 - -0.5
1,350,454 - -0.9
1,350,454 - +0.2
1,350,518 + +0.6
1,350,638 + +1.1
1,350,638 + +0.2
1,350,638 + -0.1
1,350,638 + +0.3
1,350,639 - -0.5
1,350,639 - -0.3
1,350,730 + +0.2
1,350,730 + -2.2
1,350,730 + -0.2
1,350,731 - -0.2
1,350,796 + -0.3
1,350,797 - -0.1
1,350,917 + PfGW456L13_1209 0.26 +0.3
1,350,917 + PfGW456L13_1209 0.26 +0.6
1,350,918 - PfGW456L13_1209 0.27 +0.3
1,350,918 - PfGW456L13_1209 0.27 +0.5
1,350,918 - PfGW456L13_1209 0.27 +0.7
1,351,155 + PfGW456L13_1209 0.62 -1.3
1,351,155 + PfGW456L13_1209 0.62 +0.7
1,351,156 - PfGW456L13_1209 0.62 +1.0
1,351,156 - PfGW456L13_1209 0.62 -0.1
1,351,202 + PfGW456L13_1209 0.68 -0.3
1,351,389 + -0.7
1,351,389 + +0.8
1,351,389 + +0.3
1,351,389 + +0.1
1,351,389 + -0.0
1,351,390 - +1.0
1,351,390 - +0.2
1,351,390 - +0.6
1,351,390 - -0.5
1,351,413 + +0.5
1,351,414 - +0.4
1,351,414 - +0.1
1,351,414 - -0.3
1,351,414 - +0.5
1,351,428 + -0.1
1,351,428 + +0.4
1,351,429 - -0.2
1,351,429 - -0.6
1,351,538 - -0.3
1,351,538 - -0.6
1,351,538 - +0.2
1,351,553 + -0.5

Or see this region's nucleotide sequence