Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4569

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4568 and Echvi_4569 are separated by 82 nucleotidesEchvi_4569 and Echvi_4570 are separated by 82 nucleotides Echvi_4568: Echvi_4568 - hypothetical protein, at 5,470,434 to 5,471,663 _4568 Echvi_4569: Echvi_4569 - Uncharacterized iron-regulated membrane protein, at 5,471,746 to 5,472,960 _4569 Echvi_4570: Echvi_4570 - Peroxiredoxin, at 5,473,043 to 5,474,152 _4570 Position (kb) 5471 5472 5473Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5470.996 kb on + strand, within Echvi_4568at 5470.997 kb on - strand, within Echvi_4568at 5470.997 kb on - strand, within Echvi_4568at 5470.997 kb on - strand, within Echvi_4568at 5471.007 kb on + strand, within Echvi_4568at 5471.093 kb on + strand, within Echvi_4568at 5471.115 kb on - strand, within Echvi_4568at 5471.133 kb on + strand, within Echvi_4568at 5471.133 kb on + strand, within Echvi_4568at 5471.134 kb on - strand, within Echvi_4568at 5471.134 kb on - strand, within Echvi_4568at 5471.134 kb on - strand, within Echvi_4568at 5471.135 kb on + strand, within Echvi_4568at 5471.145 kb on + strandat 5471.187 kb on + strand, within Echvi_4568at 5471.187 kb on + strand, within Echvi_4568at 5471.187 kb on + strand, within Echvi_4568at 5471.187 kb on + strand, within Echvi_4568at 5471.188 kb on - strand, within Echvi_4568at 5471.188 kb on - strand, within Echvi_4568at 5471.346 kb on + strand, within Echvi_4568at 5471.346 kb on + strand, within Echvi_4568at 5471.347 kb on - strand, within Echvi_4568at 5471.387 kb on - strand, within Echvi_4568at 5471.397 kb on + strand, within Echvi_4568at 5471.397 kb on + strand, within Echvi_4568at 5471.397 kb on + strand, within Echvi_4568at 5471.398 kb on - strand, within Echvi_4568at 5471.400 kb on - strand, within Echvi_4568at 5471.411 kb on + strand, within Echvi_4568at 5471.412 kb on - strand, within Echvi_4568at 5471.412 kb on - strand, within Echvi_4568at 5471.506 kb on - strand, within Echvi_4568at 5471.532 kb on + strand, within Echvi_4568at 5471.533 kb on - strand, within Echvi_4568at 5471.614 kb on + strandat 5471.614 kb on + strandat 5471.615 kb on - strandat 5471.630 kb on + strandat 5471.760 kb on + strandat 5471.760 kb on + strandat 5471.761 kb on - strandat 5471.761 kb on - strandat 5471.792 kb on + strandat 5471.828 kb on + strandat 5471.849 kb on + strandat 5471.960 kb on + strand, within Echvi_4569at 5471.961 kb on - strand, within Echvi_4569at 5471.961 kb on - strand, within Echvi_4569at 5471.961 kb on - strand, within Echvi_4569at 5472.028 kb on + strand, within Echvi_4569at 5472.061 kb on + strand, within Echvi_4569at 5472.082 kb on + strand, within Echvi_4569at 5472.098 kb on + strand, within Echvi_4569at 5472.098 kb on + strand, within Echvi_4569at 5472.106 kb on + strand, within Echvi_4569at 5472.119 kb on + strand, within Echvi_4569at 5472.120 kb on - strand, within Echvi_4569at 5472.182 kb on + strand, within Echvi_4569at 5472.182 kb on + strand, within Echvi_4569at 5472.183 kb on - strand, within Echvi_4569at 5472.183 kb on - strand, within Echvi_4569at 5472.198 kb on + strand, within Echvi_4569at 5472.198 kb on + strand, within Echvi_4569at 5472.199 kb on - strand, within Echvi_4569at 5472.201 kb on - strand, within Echvi_4569at 5472.223 kb on - strand, within Echvi_4569at 5472.345 kb on + strand, within Echvi_4569at 5472.349 kb on + strand, within Echvi_4569at 5472.377 kb on - strand, within Echvi_4569at 5472.421 kb on + strand, within Echvi_4569at 5472.422 kb on - strand, within Echvi_4569at 5472.556 kb on - strand, within Echvi_4569at 5472.556 kb on - strand, within Echvi_4569at 5472.556 kb on - strand, within Echvi_4569at 5472.556 kb on - strand, within Echvi_4569at 5472.638 kb on + strand, within Echvi_4569at 5472.645 kb on - strand, within Echvi_4569at 5472.688 kb on + strand, within Echvi_4569at 5472.772 kb on + strand, within Echvi_4569at 5472.772 kb on + strand, within Echvi_4569at 5472.773 kb on - strand, within Echvi_4569at 5472.981 kb on - strandat 5473.003 kb on + strandat 5473.004 kb on - strandat 5473.011 kb on + strandat 5473.012 kb on - strandat 5473.059 kb on + strandat 5473.179 kb on - strand, within Echvi_4570at 5473.211 kb on - strand, within Echvi_4570at 5473.211 kb on - strand, within Echvi_4570at 5473.221 kb on - strand, within Echvi_4570at 5473.268 kb on + strand, within Echvi_4570at 5473.268 kb on + strand, within Echvi_4570at 5473.268 kb on + strand, within Echvi_4570at 5473.269 kb on - strand, within Echvi_4570at 5473.289 kb on + strand, within Echvi_4570at 5473.289 kb on + strand, within Echvi_4570at 5473.289 kb on + strand, within Echvi_4570at 5473.290 kb on - strand, within Echvi_4570at 5473.290 kb on - strand, within Echvi_4570at 5473.290 kb on - strand, within Echvi_4570at 5473.301 kb on + strand, within Echvi_4570at 5473.301 kb on + strand, within Echvi_4570at 5473.302 kb on - strand, within Echvi_4570at 5473.302 kb on - strand, within Echvi_4570at 5473.302 kb on - strand, within Echvi_4570at 5473.400 kb on - strand, within Echvi_4570at 5473.418 kb on - strand, within Echvi_4570at 5473.455 kb on - strand, within Echvi_4570at 5473.455 kb on - strand, within Echvi_4570at 5473.459 kb on + strand, within Echvi_4570at 5473.473 kb on + strand, within Echvi_4570at 5473.488 kb on - strand, within Echvi_4570at 5473.496 kb on + strand, within Echvi_4570at 5473.517 kb on - strand, within Echvi_4570at 5473.607 kb on + strand, within Echvi_4570at 5473.656 kb on - strand, within Echvi_4570at 5473.684 kb on + strand, within Echvi_4570at 5473.684 kb on + strand, within Echvi_4570at 5473.685 kb on - strand, within Echvi_4570at 5473.685 kb on - strand, within Echvi_4570at 5473.688 kb on + strand, within Echvi_4570at 5473.688 kb on + strand, within Echvi_4570at 5473.689 kb on - strand, within Echvi_4570at 5473.689 kb on - strand, within Echvi_4570at 5473.818 kb on + strand, within Echvi_4570at 5473.843 kb on - strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.944 kb on - strand, within Echvi_4570at 5473.944 kb on - strand, within Echvi_4570at 5473.946 kb on - strand, within Echvi_4570

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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5,470,996 + Echvi_4568 0.46 +1.4
5,470,997 - Echvi_4568 0.46 -1.0
5,470,997 - Echvi_4568 0.46 +0.2
5,470,997 - Echvi_4568 0.46 +2.2
5,471,007 + Echvi_4568 0.47 +1.0
5,471,093 + Echvi_4568 0.54 -1.7
5,471,115 - Echvi_4568 0.55 -0.1
5,471,133 + Echvi_4568 0.57 +0.4
5,471,133 + Echvi_4568 0.57 -0.0
5,471,134 - Echvi_4568 0.57 -1.3
5,471,134 - Echvi_4568 0.57 +0.1
5,471,134 - Echvi_4568 0.57 +0.8
5,471,135 + Echvi_4568 0.57 +0.3
5,471,145 + +2.0
5,471,187 + Echvi_4568 0.61 +1.2
5,471,187 + Echvi_4568 0.61 +0.8
5,471,187 + Echvi_4568 0.61 -0.3
5,471,187 + Echvi_4568 0.61 +0.2
5,471,188 - Echvi_4568 0.61 +0.7
5,471,188 - Echvi_4568 0.61 -0.1
5,471,346 + Echvi_4568 0.74 +0.3
5,471,346 + Echvi_4568 0.74 +1.0
5,471,347 - Echvi_4568 0.74 -1.7
5,471,387 - Echvi_4568 0.77 -0.8
5,471,397 + Echvi_4568 0.78 -0.1
5,471,397 + Echvi_4568 0.78 -1.7
5,471,397 + Echvi_4568 0.78 +0.6
5,471,398 - Echvi_4568 0.78 -0.5
5,471,400 - Echvi_4568 0.79 -0.9
5,471,411 + Echvi_4568 0.79 +2.1
5,471,412 - Echvi_4568 0.80 +0.7
5,471,412 - Echvi_4568 0.80 +0.1
5,471,506 - Echvi_4568 0.87 +0.7
5,471,532 + Echvi_4568 0.89 +0.8
5,471,533 - Echvi_4568 0.89 +1.4
5,471,614 + -0.3
5,471,614 + +1.1
5,471,615 - -0.3
5,471,630 + +1.6
5,471,760 + -0.1
5,471,760 + -2.6
5,471,761 - -1.2
5,471,761 - -0.4
5,471,792 + +0.1
5,471,828 + +0.2
5,471,849 + +1.0
5,471,960 + Echvi_4569 0.18 -0.9
5,471,961 - Echvi_4569 0.18 +1.4
5,471,961 - Echvi_4569 0.18 -1.0
5,471,961 - Echvi_4569 0.18 -0.1
5,472,028 + Echvi_4569 0.23 -0.1
5,472,061 + Echvi_4569 0.26 +0.3
5,472,082 + Echvi_4569 0.28 -0.8
5,472,098 + Echvi_4569 0.29 -1.3
5,472,098 + Echvi_4569 0.29 -0.1
5,472,106 + Echvi_4569 0.30 -0.1
5,472,119 + Echvi_4569 0.31 +0.0
5,472,120 - Echvi_4569 0.31 +0.6
5,472,182 + Echvi_4569 0.36 -0.7
5,472,182 + Echvi_4569 0.36 +1.3
5,472,183 - Echvi_4569 0.36 +1.2
5,472,183 - Echvi_4569 0.36 +0.1
5,472,198 + Echvi_4569 0.37 -0.5
5,472,198 + Echvi_4569 0.37 +0.8
5,472,199 - Echvi_4569 0.37 -0.8
5,472,201 - Echvi_4569 0.37 +0.2
5,472,223 - Echvi_4569 0.39 -2.7
5,472,345 + Echvi_4569 0.49 -1.1
5,472,349 + Echvi_4569 0.50 -1.7
5,472,377 - Echvi_4569 0.52 +0.7
5,472,421 + Echvi_4569 0.56 -1.7
5,472,422 - Echvi_4569 0.56 -0.6
5,472,556 - Echvi_4569 0.67 -1.0
5,472,556 - Echvi_4569 0.67 +1.3
5,472,556 - Echvi_4569 0.67 -1.6
5,472,556 - Echvi_4569 0.67 +1.2
5,472,638 + Echvi_4569 0.73 -0.3
5,472,645 - Echvi_4569 0.74 -0.3
5,472,688 + Echvi_4569 0.78 -1.5
5,472,772 + Echvi_4569 0.84 -0.8
5,472,772 + Echvi_4569 0.84 +0.7
5,472,773 - Echvi_4569 0.85 -0.8
5,472,981 - +2.3
5,473,003 + -0.7
5,473,004 - -1.5
5,473,011 + -0.6
5,473,012 - +0.2
5,473,059 + +0.3
5,473,179 - Echvi_4570 0.12 -1.3
5,473,211 - Echvi_4570 0.15 +0.4
5,473,211 - Echvi_4570 0.15 -2.5
5,473,221 - Echvi_4570 0.16 +0.4
5,473,268 + Echvi_4570 0.20 -0.4
5,473,268 + Echvi_4570 0.20 -1.0
5,473,268 + Echvi_4570 0.20 -0.8
5,473,269 - Echvi_4570 0.20 +1.0
5,473,289 + Echvi_4570 0.22 +0.3
5,473,289 + Echvi_4570 0.22 -0.1
5,473,289 + Echvi_4570 0.22 -0.2
5,473,290 - Echvi_4570 0.22 +1.2
5,473,290 - Echvi_4570 0.22 -2.7
5,473,290 - Echvi_4570 0.22 -0.5
5,473,301 + Echvi_4570 0.23 -0.3
5,473,301 + Echvi_4570 0.23 -1.0
5,473,302 - Echvi_4570 0.23 +2.8
5,473,302 - Echvi_4570 0.23 -0.6
5,473,302 - Echvi_4570 0.23 +0.4
5,473,400 - Echvi_4570 0.32 +0.3
5,473,418 - Echvi_4570 0.34 +0.5
5,473,455 - Echvi_4570 0.37 -1.2
5,473,455 - Echvi_4570 0.37 +2.0
5,473,459 + Echvi_4570 0.37 -0.1
5,473,473 + Echvi_4570 0.39 +0.1
5,473,488 - Echvi_4570 0.40 -0.1
5,473,496 + Echvi_4570 0.41 +1.1
5,473,517 - Echvi_4570 0.43 -0.1
5,473,607 + Echvi_4570 0.51 -3.0
5,473,656 - Echvi_4570 0.55 +0.1
5,473,684 + Echvi_4570 0.58 -0.3
5,473,684 + Echvi_4570 0.58 -0.6
5,473,685 - Echvi_4570 0.58 +1.2
5,473,685 - Echvi_4570 0.58 +1.2
5,473,688 + Echvi_4570 0.58 -0.5
5,473,688 + Echvi_4570 0.58 -0.4
5,473,689 - Echvi_4570 0.58 -0.2
5,473,689 - Echvi_4570 0.58 -1.6
5,473,818 + Echvi_4570 0.70 -0.3
5,473,843 - Echvi_4570 0.72 -0.7
5,473,943 + Echvi_4570 0.81 -1.6
5,473,943 + Echvi_4570 0.81 +0.8
5,473,943 + Echvi_4570 0.81 -0.5
5,473,943 + Echvi_4570 0.81 -0.6
5,473,943 + Echvi_4570 0.81 -0.8
5,473,943 + Echvi_4570 0.81 +0.4
5,473,943 + Echvi_4570 0.81 +0.4
5,473,944 - Echvi_4570 0.81 +0.7
5,473,944 - Echvi_4570 0.81 -0.9
5,473,946 - Echvi_4570 0.81 -0.5

Or see this region's nucleotide sequence