Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0682 and Echvi_0683 are separated by 344 nucleotides Echvi_0683 and Echvi_0684 are separated by 24 nucleotides Echvi_0684 and Echvi_0685 are separated by 352 nucleotides
Echvi_0682: Echvi_0682 - Outer membrane protein, at 768,754 to 770,082
_0682
Echvi_0683: Echvi_0683 - Putative regulator of cell autolysis, at 770,427 to 772,589
_0683
Echvi_0684: Echvi_0684 - hypothetical protein, at 772,614 to 773,042
_0684
Echvi_0685: Echvi_0685 - Response regulator of the LytR/AlgR family, at 773,395 to 774,165
_0685
Position (kb) 770
771
772
773 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 769.451 kb on + strand, within Echvi_0682 at 769.451 kb on + strand, within Echvi_0682 at 769.451 kb on + strand, within Echvi_0682 at 769.451 kb on + strand, within Echvi_0682 at 769.451 kb on + strand, within Echvi_0682 at 769.452 kb on - strand, within Echvi_0682 at 769.488 kb on - strand, within Echvi_0682 at 769.588 kb on + strand, within Echvi_0682 at 769.589 kb on - strand, within Echvi_0682 at 769.765 kb on + strand, within Echvi_0682 at 769.765 kb on + strand, within Echvi_0682 at 769.765 kb on + strand, within Echvi_0682 at 769.765 kb on + strand, within Echvi_0682 at 769.765 kb on + strand, within Echvi_0682 at 769.765 kb on + strand, within Echvi_0682 at 769.766 kb on - strand, within Echvi_0682 at 769.766 kb on - strand, within Echvi_0682 at 769.807 kb on + strand, within Echvi_0682 at 769.808 kb on - strand, within Echvi_0682 at 769.818 kb on + strand, within Echvi_0682 at 769.825 kb on + strand, within Echvi_0682 at 769.874 kb on + strand, within Echvi_0682 at 769.875 kb on - strand, within Echvi_0682 at 769.930 kb on + strand, within Echvi_0682 at 769.930 kb on + strand, within Echvi_0682 at 769.930 kb on + strand, within Echvi_0682 at 769.931 kb on - strand, within Echvi_0682 at 769.941 kb on + strand, within Echvi_0682 at 769.955 kb on + strand at 769.955 kb on + strand at 770.047 kb on + strand at 770.050 kb on + strand at 770.051 kb on - strand at 770.072 kb on + strand at 770.072 kb on + strand at 770.072 kb on + strand at 770.073 kb on - strand at 770.210 kb on - strand at 770.233 kb on + strand at 770.234 kb on - strand at 770.234 kb on - strand at 770.234 kb on - strand at 770.270 kb on - strand at 770.280 kb on + strand at 770.281 kb on - strand at 770.281 kb on - strand at 770.281 kb on - strand at 770.281 kb on - strand at 770.350 kb on - strand at 770.382 kb on - strand at 770.410 kb on + strand at 770.411 kb on - strand at 770.426 kb on + strand at 770.435 kb on - strand at 770.458 kb on + strand at 770.458 kb on + strand at 770.458 kb on + strand at 770.467 kb on + strand at 770.549 kb on + strand at 770.575 kb on + strand at 770.668 kb on + strand, within Echvi_0683 at 770.686 kb on + strand, within Echvi_0683 at 770.686 kb on + strand, within Echvi_0683 at 770.686 kb on + strand, within Echvi_0683 at 770.686 kb on + strand, within Echvi_0683 at 770.687 kb on - strand, within Echvi_0683 at 770.687 kb on - strand, within Echvi_0683 at 770.687 kb on - strand, within Echvi_0683 at 770.687 kb on - strand, within Echvi_0683 at 770.687 kb on - strand, within Echvi_0683 at 770.691 kb on + strand, within Echvi_0683 at 770.691 kb on + strand, within Echvi_0683 at 770.691 kb on + strand, within Echvi_0683 at 770.691 kb on + strand, within Echvi_0683 at 770.692 kb on - strand, within Echvi_0683 at 770.724 kb on + strand, within Echvi_0683 at 770.724 kb on + strand, within Echvi_0683 at 770.731 kb on - strand, within Echvi_0683 at 770.880 kb on + strand, within Echvi_0683 at 770.880 kb on + strand, within Echvi_0683 at 770.948 kb on + strand, within Echvi_0683 at 770.948 kb on + strand, within Echvi_0683 at 770.949 kb on - strand, within Echvi_0683 at 770.949 kb on - strand, within Echvi_0683 at 771.006 kb on + strand, within Echvi_0683 at 771.041 kb on + strand, within Echvi_0683 at 771.041 kb on + strand, within Echvi_0683 at 771.042 kb on - strand, within Echvi_0683 at 771.042 kb on - strand, within Echvi_0683 at 771.042 kb on - strand, within Echvi_0683 at 771.042 kb on - strand, within Echvi_0683 at 771.047 kb on + strand, within Echvi_0683 at 771.048 kb on - strand, within Echvi_0683 at 771.088 kb on - strand, within Echvi_0683 at 771.088 kb on - strand, within Echvi_0683 at 771.090 kb on + strand, within Echvi_0683 at 771.142 kb on + strand, within Echvi_0683 at 771.189 kb on + strand, within Echvi_0683 at 771.189 kb on + strand, within Echvi_0683 at 771.196 kb on - strand, within Echvi_0683 at 771.373 kb on - strand, within Echvi_0683 at 771.373 kb on - strand, within Echvi_0683 at 771.454 kb on - strand, within Echvi_0683 at 771.454 kb on - strand, within Echvi_0683 at 771.454 kb on - strand, within Echvi_0683 at 771.454 kb on - strand, within Echvi_0683 at 771.454 kb on - strand, within Echvi_0683 at 771.472 kb on - strand, within Echvi_0683 at 771.510 kb on + strand, within Echvi_0683 at 771.510 kb on + strand, within Echvi_0683 at 771.510 kb on + strand, within Echvi_0683 at 771.510 kb on + strand, within Echvi_0683 at 771.510 kb on + strand, within Echvi_0683 at 771.510 kb on + strand, within Echvi_0683 at 771.511 kb on - strand, within Echvi_0683 at 771.688 kb on + strand, within Echvi_0683 at 771.711 kb on - strand, within Echvi_0683 at 771.729 kb on - strand, within Echvi_0683 at 771.912 kb on - strand, within Echvi_0683 at 771.984 kb on - strand, within Echvi_0683 at 772.044 kb on + strand, within Echvi_0683 at 772.045 kb on - strand, within Echvi_0683 at 772.046 kb on + strand, within Echvi_0683 at 772.046 kb on + strand, within Echvi_0683 at 772.046 kb on + strand, within Echvi_0683 at 772.046 kb on + strand, within Echvi_0683 at 772.131 kb on - strand, within Echvi_0683 at 772.140 kb on + strand, within Echvi_0683 at 772.141 kb on - strand, within Echvi_0683 at 772.145 kb on - strand, within Echvi_0683 at 772.182 kb on + strand, within Echvi_0683 at 772.182 kb on + strand, within Echvi_0683 at 772.182 kb on + strand, within Echvi_0683 at 772.193 kb on + strand, within Echvi_0683 at 772.193 kb on + strand, within Echvi_0683 at 772.194 kb on - strand, within Echvi_0683 at 772.207 kb on + strand, within Echvi_0683 at 772.208 kb on - strand, within Echvi_0683 at 772.208 kb on - strand, within Echvi_0683 at 772.255 kb on + strand, within Echvi_0683 at 772.348 kb on + strand, within Echvi_0683 at 772.348 kb on + strand, within Echvi_0683 at 772.349 kb on - strand, within Echvi_0683 at 772.349 kb on - strand, within Echvi_0683 at 772.380 kb on - strand at 772.535 kb on + strand at 772.549 kb on + strand at 772.549 kb on + strand at 772.549 kb on + strand at 772.550 kb on - strand at 772.553 kb on + strand at 772.553 kb on + strand at 772.553 kb on + strand at 772.553 kb on + strand at 772.553 kb on + strand at 772.553 kb on + strand at 772.554 kb on - strand at 772.554 kb on - strand at 772.554 kb on - strand at 772.554 kb on - strand at 772.554 kb on - strand at 772.587 kb on + strand at 772.587 kb on + strand at 772.609 kb on + strand at 772.609 kb on + strand at 772.610 kb on - strand at 772.641 kb on - strand at 772.664 kb on + strand, within Echvi_0684 at 772.664 kb on + strand, within Echvi_0684 at 772.708 kb on + strand, within Echvi_0684 at 772.740 kb on + strand, within Echvi_0684 at 772.740 kb on + strand, within Echvi_0684 at 772.741 kb on - strand, within Echvi_0684 at 772.758 kb on - strand, within Echvi_0684 at 772.784 kb on + strand, within Echvi_0684 at 772.784 kb on + strand at 772.785 kb on - strand, within Echvi_0684 at 772.789 kb on + strand, within Echvi_0684 at 772.804 kb on + strand, within Echvi_0684 at 772.804 kb on + strand, within Echvi_0684 at 772.805 kb on - strand, within Echvi_0684 at 772.922 kb on - strand, within Echvi_0684 at 772.982 kb on - strand, within Echvi_0684 at 773.017 kb on + strand at 773.018 kb on - strand at 773.018 kb on - strand at 773.042 kb on + strand at 773.043 kb on - strand at 773.049 kb on - strand at 773.055 kb on + strand at 773.056 kb on - strand at 773.086 kb on + strand at 773.091 kb on - strand at 773.091 kb on - strand at 773.169 kb on - strand at 773.190 kb on + strand at 773.190 kb on + strand at 773.190 kb on + strand at 773.212 kb on + strand at 773.260 kb on - strand at 773.278 kb on - strand at 773.281 kb on - strand at 773.281 kb on - strand at 773.283 kb on + strand at 773.319 kb on + strand at 773.325 kb on + strand at 773.325 kb on + strand at 773.329 kb on + strand at 773.338 kb on - strand at 773.349 kb on + strand at 773.349 kb on + strand at 773.351 kb on + strand at 773.354 kb on + strand at 773.354 kb on + strand at 773.360 kb on - strand at 773.385 kb on + strand at 773.385 kb on + strand at 773.386 kb on - strand at 773.387 kb on + strand at 773.402 kb on + strand at 773.444 kb on + strand at 773.445 kb on - strand at 773.453 kb on + strand at 773.474 kb on + strand, within Echvi_0685 at 773.526 kb on + strand, within Echvi_0685 at 773.526 kb on + strand, within Echvi_0685 at 773.526 kb on + strand, within Echvi_0685 at 773.527 kb on - strand, within Echvi_0685 at 773.558 kb on + strand, within Echvi_0685 at 773.559 kb on - strand, within Echvi_0685
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 769,451 + Echvi_0682 0.52 -2.4 769,451 + Echvi_0682 0.52 -0.3 769,451 + Echvi_0682 0.52 +0.9 769,451 + Echvi_0682 0.52 -0.7 769,451 + Echvi_0682 0.52 -0.3 769,452 - Echvi_0682 0.53 -2.2 769,488 - Echvi_0682 0.55 -1.9 769,588 + Echvi_0682 0.63 +0.9 769,589 - Echvi_0682 0.63 -2.0 769,765 + Echvi_0682 0.76 -0.1 769,765 + Echvi_0682 0.76 +1.5 769,765 + Echvi_0682 0.76 -0.6 769,765 + Echvi_0682 0.76 +1.6 769,765 + Echvi_0682 0.76 +0.9 769,765 + Echvi_0682 0.76 +1.6 769,766 - Echvi_0682 0.76 +0.9 769,766 - Echvi_0682 0.76 +0.5 769,807 + Echvi_0682 0.79 +1.2 769,808 - Echvi_0682 0.79 -0.2 769,818 + Echvi_0682 0.80 -0.8 769,825 + Echvi_0682 0.81 -0.1 769,874 + Echvi_0682 0.84 +2.8 769,875 - Echvi_0682 0.84 -0.3 769,930 + Echvi_0682 0.88 -0.5 769,930 + Echvi_0682 0.88 -1.0 769,930 + Echvi_0682 0.88 -1.6 769,931 - Echvi_0682 0.89 -2.7 769,941 + Echvi_0682 0.89 -1.0 769,955 + -0.4 769,955 + -0.1 770,047 + +1.3 770,050 + -0.2 770,051 - -0.1 770,072 + +0.5 770,072 + -0.5 770,072 + +0.6 770,073 - +1.0 770,210 - -0.5 770,233 + +0.5 770,234 - -0.4 770,234 - -2.1 770,234 - +0.6 770,270 - +0.5 770,280 + -0.8 770,281 - -1.8 770,281 - -1.8 770,281 - +0.2 770,281 - -0.6 770,350 - -1.7 770,382 - -2.6 770,410 + +0.7 770,411 - +0.9 770,426 + -0.5 770,435 - -0.5 770,458 + -1.6 770,458 + +2.6 770,458 + -0.6 770,467 + +1.9 770,549 + -0.1 770,575 + -0.0 770,668 + Echvi_0683 0.11 -1.8 770,686 + Echvi_0683 0.12 -1.6 770,686 + Echvi_0683 0.12 +1.3 770,686 + Echvi_0683 0.12 +0.4 770,686 + Echvi_0683 0.12 -0.6 770,687 - Echvi_0683 0.12 +0.5 770,687 - Echvi_0683 0.12 +0.6 770,687 - Echvi_0683 0.12 -0.1 770,687 - Echvi_0683 0.12 -0.0 770,687 - Echvi_0683 0.12 +1.0 770,691 + Echvi_0683 0.12 -2.3 770,691 + Echvi_0683 0.12 -0.6 770,691 + Echvi_0683 0.12 -0.3 770,691 + Echvi_0683 0.12 +0.4 770,692 - Echvi_0683 0.12 +0.6 770,724 + Echvi_0683 0.14 +0.8 770,724 + Echvi_0683 0.14 -0.6 770,731 - Echvi_0683 0.14 -1.6 770,880 + Echvi_0683 0.21 -0.9 770,880 + Echvi_0683 0.21 +1.4 770,948 + Echvi_0683 0.24 +0.0 770,948 + Echvi_0683 0.24 -1.9 770,949 - Echvi_0683 0.24 -1.0 770,949 - Echvi_0683 0.24 +0.5 771,006 + Echvi_0683 0.27 +1.4 771,041 + Echvi_0683 0.28 -0.3 771,041 + Echvi_0683 0.28 +1.4 771,042 - Echvi_0683 0.28 -1.6 771,042 - Echvi_0683 0.28 -0.3 771,042 - Echvi_0683 0.28 +0.9 771,042 - Echvi_0683 0.28 +1.5 771,047 + Echvi_0683 0.29 +1.1 771,048 - Echvi_0683 0.29 +1.1 771,088 - Echvi_0683 0.31 -0.4 771,088 - Echvi_0683 0.31 -1.4 771,090 + Echvi_0683 0.31 -0.4 771,142 + Echvi_0683 0.33 -0.1 771,189 + Echvi_0683 0.35 -0.6 771,189 + Echvi_0683 0.35 -1.4 771,196 - Echvi_0683 0.36 +1.0 771,373 - Echvi_0683 0.44 -0.4 771,373 - Echvi_0683 0.44 +1.6 771,454 - Echvi_0683 0.47 -2.1 771,454 - Echvi_0683 0.47 +1.3 771,454 - Echvi_0683 0.47 +1.6 771,454 - Echvi_0683 0.47 -0.4 771,454 - Echvi_0683 0.47 +1.2 771,472 - Echvi_0683 0.48 -1.9 771,510 + Echvi_0683 0.50 -0.5 771,510 + Echvi_0683 0.50 -1.6 771,510 + Echvi_0683 0.50 +1.0 771,510 + Echvi_0683 0.50 -1.8 771,510 + Echvi_0683 0.50 -0.3 771,510 + Echvi_0683 0.50 +1.0 771,511 - Echvi_0683 0.50 -1.7 771,688 + Echvi_0683 0.58 +1.6 771,711 - Echvi_0683 0.59 -0.4 771,729 - Echvi_0683 0.60 +0.4 771,912 - Echvi_0683 0.69 +1.2 771,984 - Echvi_0683 0.72 +0.4 772,044 + Echvi_0683 0.75 +0.1 772,045 - Echvi_0683 0.75 +0.1 772,046 + Echvi_0683 0.75 -1.3 772,046 + Echvi_0683 0.75 -1.5 772,046 + Echvi_0683 0.75 +0.7 772,046 + Echvi_0683 0.75 +1.5 772,131 - Echvi_0683 0.79 -1.0 772,140 + Echvi_0683 0.79 -1.2 772,141 - Echvi_0683 0.79 -0.8 772,145 - Echvi_0683 0.79 +0.6 772,182 + Echvi_0683 0.81 -0.1 772,182 + Echvi_0683 0.81 +0.5 772,182 + Echvi_0683 0.81 +2.7 772,193 + Echvi_0683 0.82 -0.2 772,193 + Echvi_0683 0.82 -1.8 772,194 - Echvi_0683 0.82 -0.8 772,207 + Echvi_0683 0.82 +0.2 772,208 - Echvi_0683 0.82 +0.4 772,208 - Echvi_0683 0.82 +0.7 772,255 + Echvi_0683 0.85 +0.7 772,348 + Echvi_0683 0.89 -0.3 772,348 + Echvi_0683 0.89 +0.3 772,349 - Echvi_0683 0.89 +1.2 772,349 - Echvi_0683 0.89 -0.1 772,380 - +1.1 772,535 + +2.2 772,549 + -1.4 772,549 + -0.2 772,549 + -0.0 772,550 - +0.4 772,553 + -1.3 772,553 + -0.1 772,553 + +0.7 772,553 + +0.5 772,553 + -0.6 772,553 + +1.4 772,554 - +2.2 772,554 - +0.5 772,554 - +0.3 772,554 - -0.2 772,554 - -1.1 772,587 + -0.3 772,587 + +0.6 772,609 + -1.3 772,609 + +2.2 772,610 - +0.2 772,641 - -0.6 772,664 + Echvi_0684 0.12 +1.0 772,664 + Echvi_0684 0.12 -0.0 772,708 + Echvi_0684 0.22 +1.5 772,740 + Echvi_0684 0.29 +1.3 772,740 + Echvi_0684 0.29 -2.0 772,741 - Echvi_0684 0.30 -1.0 772,758 - Echvi_0684 0.34 +0.5 772,784 + Echvi_0684 0.40 -0.8 772,784 + +0.6 772,785 - Echvi_0684 0.40 +0.1 772,789 + Echvi_0684 0.41 -0.1 772,804 + Echvi_0684 0.44 -0.8 772,804 + Echvi_0684 0.44 +0.4 772,805 - Echvi_0684 0.45 -1.0 772,922 - Echvi_0684 0.72 -1.3 772,982 - Echvi_0684 0.86 +2.6 773,017 + +0.2 773,018 - -0.1 773,018 - +0.9 773,042 + -0.1 773,043 - +1.9 773,049 - +0.2 773,055 + +0.3 773,056 - -0.5 773,086 + -2.4 773,091 - -0.0 773,091 - +0.0 773,169 - -0.5 773,190 + -0.4 773,190 + +1.7 773,190 + -0.1 773,212 + +0.1 773,260 - -2.4 773,278 - +0.6 773,281 - +0.5 773,281 - -0.3 773,283 + +1.1 773,319 + -0.6 773,325 + +0.6 773,325 + -0.3 773,329 + -2.3 773,338 - +1.9 773,349 + -0.1 773,349 + -2.0 773,351 + -0.0 773,354 + +0.2 773,354 + +0.8 773,360 - +1.5 773,385 + -0.3 773,385 + +0.6 773,386 - +0.5 773,387 + -1.3 773,402 + +0.3 773,444 + +0.6 773,445 - +1.3 773,453 + +0.1 773,474 + Echvi_0685 0.10 -0.7 773,526 + Echvi_0685 0.17 -1.6 773,526 + Echvi_0685 0.17 -1.5 773,526 + Echvi_0685 0.17 +1.0 773,527 - Echvi_0685 0.17 -0.8 773,558 + Echvi_0685 0.21 -2.3 773,559 - Echvi_0685 0.21 -2.0
Or see this region's nucleotide sequence