Strain Fitness in Agrobacterium fabrum C58 around Atu3340

Experiment: D-Leucrose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu3339 and Atu3340 overlap by 4 nucleotidesAtu3340 and Atu3341 are separated by 10 nucleotides Atu3339: Atu3339 - trehalose/maltose ABC transporter permease, at 373,807 to 374,781 Atu3339 Atu3340: Atu3340 - trehalose/maltose ABC transporter permease, at 374,778 to 375,611 Atu3340 Atu3341: Atu3341 - trehalose/maltose ABC transporter ATPase, at 375,622 to 376,650 Atu3341 Position (kb) 374 375 376Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 373.822 kb on + strandat 373.962 kb on - strand, within Atu3339at 374.032 kb on - strand, within Atu3339at 374.032 kb on - strand, within Atu3339at 374.032 kb on - strand, within Atu3339at 374.096 kb on + strand, within Atu3339at 374.221 kb on - strand, within Atu3339at 374.254 kb on + strand, within Atu3339at 374.262 kb on - strand, within Atu3339at 374.286 kb on + strand, within Atu3339at 374.315 kb on + strand, within Atu3339at 374.467 kb on - strand, within Atu3339at 374.492 kb on - strand, within Atu3339at 374.572 kb on - strand, within Atu3339at 374.592 kb on + strand, within Atu3339at 374.622 kb on + strand, within Atu3339at 374.622 kb on + strand, within Atu3339at 374.630 kb on - strand, within Atu3339at 374.630 kb on - strand, within Atu3339at 374.774 kb on + strandat 374.818 kb on + strandat 374.868 kb on + strand, within Atu3340at 374.868 kb on + strand, within Atu3340at 375.057 kb on - strand, within Atu3340at 375.103 kb on - strand, within Atu3340at 375.232 kb on - strand, within Atu3340at 375.301 kb on + strand, within Atu3340at 375.309 kb on - strand, within Atu3340at 375.316 kb on - strand, within Atu3340at 375.347 kb on - strand, within Atu3340at 375.364 kb on + strand, within Atu3340at 375.364 kb on + strand, within Atu3340at 375.372 kb on - strand, within Atu3340at 375.372 kb on - strand, within Atu3340at 375.426 kb on - strand, within Atu3340at 375.577 kb on + strandat 375.577 kb on + strandat 375.626 kb on + strandat 375.665 kb on + strandat 375.665 kb on + strandat 375.756 kb on + strand, within Atu3341at 375.885 kb on + strand, within Atu3341at 375.981 kb on - strand, within Atu3341at 375.987 kb on + strand, within Atu3341at 375.998 kb on + strand, within Atu3341at 376.006 kb on - strand, within Atu3341at 376.073 kb on + strand, within Atu3341at 376.081 kb on - strand, within Atu3341at 376.201 kb on + strand, within Atu3341at 376.203 kb on - strand, within Atu3341at 376.206 kb on + strand, within Atu3341at 376.230 kb on + strand, within Atu3341

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Leucrose (C)
remove
373,822 + -5.7
373,962 - Atu3339 0.16 -4.5
374,032 - Atu3339 0.23 -2.2
374,032 - Atu3339 0.23 -2.4
374,032 - Atu3339 0.23 -4.4
374,096 + Atu3339 0.30 +0.8
374,221 - Atu3339 0.42 -3.9
374,254 + Atu3339 0.46 -2.2
374,262 - Atu3339 0.47 -3.1
374,286 + Atu3339 0.49 -2.6
374,315 + Atu3339 0.52 -4.1
374,467 - Atu3339 0.68 +0.3
374,492 - Atu3339 0.70 -4.4
374,572 - Atu3339 0.78 -3.6
374,592 + Atu3339 0.81 -2.3
374,622 + Atu3339 0.84 -5.5
374,622 + Atu3339 0.84 -0.2
374,630 - Atu3339 0.84 -2.4
374,630 - Atu3339 0.84 -2.1
374,774 + -2.7
374,818 + -3.5
374,868 + Atu3340 0.11 -3.7
374,868 + Atu3340 0.11 -4.1
375,057 - Atu3340 0.33 -4.6
375,103 - Atu3340 0.39 -5.0
375,232 - Atu3340 0.54 -4.4
375,301 + Atu3340 0.63 -4.7
375,309 - Atu3340 0.64 -3.2
375,316 - Atu3340 0.65 -2.8
375,347 - Atu3340 0.68 -4.4
375,364 + Atu3340 0.70 -4.1
375,364 + Atu3340 0.70 -3.1
375,372 - Atu3340 0.71 -1.0
375,372 - Atu3340 0.71 -5.3
375,426 - Atu3340 0.78 -4.2
375,577 + -0.7
375,577 + -3.2
375,626 + -3.1
375,665 + -4.2
375,665 + -3.1
375,756 + Atu3341 0.13 -3.2
375,885 + Atu3341 0.26 -2.8
375,981 - Atu3341 0.35 -4.0
375,987 + Atu3341 0.35 -2.7
375,998 + Atu3341 0.37 -3.1
376,006 - Atu3341 0.37 -5.0
376,073 + Atu3341 0.44 -5.0
376,081 - Atu3341 0.45 -4.8
376,201 + Atu3341 0.56 -4.1
376,203 - Atu3341 0.56 -2.9
376,206 + Atu3341 0.57 -1.2
376,230 + Atu3341 0.59 -2.6

Or see this region's nucleotide sequence