Experiment: D-Leucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3335 and Atu8031 are separated by 41 nucleotides Atu8031 and Atu3336 are separated by 223 nucleotides Atu3336 and Atu3337 are separated by 174 nucleotides Atu3337 and Atu3338 are separated by 268 nucleotides
Atu3335: Atu3335 - 3-methyladenine DNA glycosylase, at 369,819 to 370,400
Atu3335
Atu8031: Atu8031 - hypothetical protein, at 370,442 to 370,600
Atu8031
Atu3336: Atu3336 - hypothetical protein, at 370,824 to 371,021
Atu3336
Atu3337: Atu3337 - LacI family transcriptional regulator, at 371,196 to 372,209
Atu3337
Atu3338: Atu3338 - trehalose/maltose ABC transporter substrate-binding protein, at 372,478 to 373,743
Atu3338
Position (kb) 371
372
373 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 370.204 kb on - strand, within Atu3335 at 370.226 kb on + strand, within Atu3335 at 370.229 kb on + strand, within Atu3335 at 370.236 kb on + strand, within Atu3335 at 370.279 kb on - strand, within Atu3335 at 370.297 kb on - strand, within Atu3335 at 370.328 kb on + strand, within Atu3335 at 370.328 kb on + strand, within Atu3335 at 370.336 kb on - strand, within Atu3335 at 370.384 kb on + strand at 370.392 kb on - strand at 370.402 kb on - strand at 370.426 kb on - strand at 370.512 kb on + strand, within Atu8031 at 370.572 kb on + strand, within Atu8031 at 370.572 kb on + strand, within Atu8031 at 370.572 kb on + strand, within Atu8031 at 370.609 kb on + strand at 370.622 kb on + strand at 370.622 kb on + strand at 370.627 kb on + strand at 370.630 kb on - strand at 370.635 kb on - strand at 370.741 kb on + strand at 370.881 kb on + strand, within Atu3336 at 370.922 kb on + strand, within Atu3336 at 370.925 kb on - strand, within Atu3336 at 370.990 kb on - strand, within Atu3336 at 371.154 kb on - strand at 371.193 kb on + strand at 371.573 kb on + strand, within Atu3337 at 371.573 kb on + strand, within Atu3337 at 371.692 kb on + strand, within Atu3337 at 371.695 kb on - strand, within Atu3337 at 371.712 kb on + strand, within Atu3337 at 371.777 kb on - strand, within Atu3337 at 371.784 kb on + strand, within Atu3337 at 371.784 kb on + strand, within Atu3337 at 371.805 kb on - strand, within Atu3337 at 371.822 kb on - strand, within Atu3337 at 371.906 kb on + strand, within Atu3337 at 371.934 kb on + strand, within Atu3337 at 371.958 kb on - strand, within Atu3337 at 371.965 kb on + strand, within Atu3337 at 372.012 kb on + strand, within Atu3337 at 372.032 kb on + strand, within Atu3337 at 372.037 kb on + strand, within Atu3337 at 372.037 kb on + strand, within Atu3337 at 372.045 kb on - strand, within Atu3337 at 372.045 kb on - strand, within Atu3337 at 372.131 kb on + strand at 372.131 kb on + strand at 372.131 kb on + strand at 372.131 kb on + strand at 372.131 kb on + strand at 372.131 kb on + strand at 372.131 kb on + strand at 372.131 kb on + strand at 372.139 kb on - strand at 372.139 kb on - strand at 372.139 kb on - strand at 372.157 kb on - strand at 372.478 kb on - strand at 372.632 kb on + strand, within Atu3338 at 372.744 kb on + strand, within Atu3338 at 372.752 kb on - strand, within Atu3338 at 372.902 kb on - strand, within Atu3338 at 372.952 kb on + strand, within Atu3338 at 373.020 kb on - strand, within Atu3338 at 373.035 kb on - strand, within Atu3338 at 373.056 kb on - strand, within Atu3338 at 373.076 kb on - strand, within Atu3338 at 373.162 kb on + strand, within Atu3338
Per-strain Table
Position Strand Gene LocusTag Fraction D-Leucrose (C) remove 370,204 - Atu3335 0.66 -1.6 370,226 + Atu3335 0.70 -0.4 370,229 + Atu3335 0.70 -0.0 370,236 + Atu3335 0.72 -0.1 370,279 - Atu3335 0.79 -0.7 370,297 - Atu3335 0.82 +0.0 370,328 + Atu3335 0.87 +0.6 370,328 + Atu3335 0.87 +0.1 370,336 - Atu3335 0.89 -0.1 370,384 + +0.4 370,392 - +0.6 370,402 - +0.2 370,426 - -0.1 370,512 + Atu8031 0.44 +0.3 370,572 + Atu8031 0.82 -0.1 370,572 + Atu8031 0.82 +0.0 370,572 + Atu8031 0.82 +0.0 370,609 + -0.5 370,622 + +0.2 370,622 + +0.5 370,627 + -0.0 370,630 - +1.3 370,635 - -0.0 370,741 + -0.7 370,881 + Atu3336 0.29 +0.2 370,922 + Atu3336 0.49 -0.5 370,925 - Atu3336 0.51 -0.3 370,990 - Atu3336 0.84 +0.2 371,154 - +1.1 371,193 + +0.2 371,573 + Atu3337 0.37 +4.0 371,573 + Atu3337 0.37 +4.0 371,692 + Atu3337 0.49 +3.4 371,695 - Atu3337 0.49 +3.8 371,712 + Atu3337 0.51 +3.9 371,777 - Atu3337 0.57 +4.0 371,784 + Atu3337 0.58 +6.3 371,784 + Atu3337 0.58 +5.1 371,805 - Atu3337 0.60 +4.3 371,822 - Atu3337 0.62 +4.6 371,906 + Atu3337 0.70 +4.3 371,934 + Atu3337 0.73 +4.1 371,958 - Atu3337 0.75 +4.3 371,965 + Atu3337 0.76 +4.3 372,012 + Atu3337 0.80 +4.4 372,032 + Atu3337 0.82 +4.2 372,037 + Atu3337 0.83 +4.7 372,037 + Atu3337 0.83 +3.6 372,045 - Atu3337 0.84 +4.0 372,045 - Atu3337 0.84 +4.1 372,131 + +4.7 372,131 + +4.1 372,131 + +4.3 372,131 + +4.4 372,131 + +3.6 372,131 + +4.0 372,131 + +6.0 372,131 + +4.4 372,139 - +4.4 372,139 - +4.5 372,139 - +4.1 372,157 - +4.1 372,478 - -4.6 372,632 + Atu3338 0.12 -4.5 372,744 + Atu3338 0.21 -5.8 372,752 - Atu3338 0.22 -5.6 372,902 - Atu3338 0.33 -4.7 372,952 + Atu3338 0.37 -4.2 373,020 - Atu3338 0.43 -2.5 373,035 - Atu3338 0.44 -2.9 373,056 - Atu3338 0.46 -4.6 373,076 - Atu3338 0.47 -2.7 373,162 + Atu3338 0.54 -3.1
Or see this region's nucleotide sequence