Experiment: D-Leucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3006 and Atu3007 are separated by 19 nucleotides Atu3007 and Atu3008 are separated by 92 nucleotides Atu3008 and Atu3009 are separated by 137 nucleotides Atu3009 and Atu3010 are separated by 26 nucleotides Atu3010 and Atu3011 overlap by 4 nucleotides
Atu3006: Atu3006 - hypothetical protein, at 3,393 to 4,811
Atu3006
Atu3007: Atu3007 - hypothetical protein, at 4,831 to 5,085
Atu3007
Atu3008: Atu3008 - hypothetical protein, at 5,178 to 5,372
Atu3008
Atu3009: Atu3009 - exopolysaccharide production protein, at 5,510 to 6,577
Atu3009
Atu3010: Atu3010 - hypothetical protein, at 6,604 to 7,527
Atu3010
Atu3011: Atu3011 - ArsR family transcriptional regulator, at 7,524 to 7,880
Atu3011
Position (kb) 5
6
7 Strain fitness (log2 ratio) -1
0
1
2
3 at 4.757 kb on - strand at 4.789 kb on - strand at 4.935 kb on - strand, within Atu3007 at 5.166 kb on - strand at 5.338 kb on - strand, within Atu3008 at 5.535 kb on - strand at 5.738 kb on + strand, within Atu3009 at 5.885 kb on - strand, within Atu3009 at 6.549 kb on + strand at 6.549 kb on + strand at 6.647 kb on - strand at 6.673 kb on - strand at 6.678 kb on - strand at 6.715 kb on - strand, within Atu3010 at 6.736 kb on + strand, within Atu3010 at 6.736 kb on + strand, within Atu3010 at 6.736 kb on + strand, within Atu3010 at 6.834 kb on - strand, within Atu3010 at 6.854 kb on - strand, within Atu3010 at 6.869 kb on + strand, within Atu3010 at 6.912 kb on - strand, within Atu3010 at 6.952 kb on + strand, within Atu3010 at 7.007 kb on + strand, within Atu3010 at 7.060 kb on + strand, within Atu3010 at 7.111 kb on - strand, within Atu3010 at 7.111 kb on - strand, within Atu3010 at 7.111 kb on - strand, within Atu3010 at 7.185 kb on - strand, within Atu3010 at 7.194 kb on + strand, within Atu3010 at 7.202 kb on - strand, within Atu3010 at 7.311 kb on + strand, within Atu3010 at 7.357 kb on + strand, within Atu3010 at 7.364 kb on + strand, within Atu3010 at 7.365 kb on + strand, within Atu3010 at 7.366 kb on - strand, within Atu3010 at 7.383 kb on - strand, within Atu3010 at 7.403 kb on + strand, within Atu3010 at 7.403 kb on + strand, within Atu3010 at 7.411 kb on - strand, within Atu3010 at 7.411 kb on - strand, within Atu3010 at 7.411 kb on - strand, within Atu3010 at 7.429 kb on - strand, within Atu3010 at 7.515 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Leucrose (C) remove 4,757 - +0.6 4,789 - +0.9 4,935 - Atu3007 0.41 +1.7 5,166 - +0.2 5,338 - Atu3008 0.82 +0.4 5,535 - +0.9 5,738 + Atu3009 0.21 +0.0 5,885 - Atu3009 0.35 +0.8 6,549 + +0.6 6,549 + +0.4 6,647 - +1.9 6,673 - +1.9 6,678 - -0.7 6,715 - Atu3010 0.12 +0.6 6,736 + Atu3010 0.14 +0.7 6,736 + Atu3010 0.14 +1.3 6,736 + Atu3010 0.14 +0.3 6,834 - Atu3010 0.25 +0.5 6,854 - Atu3010 0.27 +0.7 6,869 + Atu3010 0.29 +2.3 6,912 - Atu3010 0.33 +0.5 6,952 + Atu3010 0.38 +0.5 7,007 + Atu3010 0.44 +0.8 7,060 + Atu3010 0.49 +0.3 7,111 - Atu3010 0.55 +1.3 7,111 - Atu3010 0.55 +1.3 7,111 - Atu3010 0.55 -0.1 7,185 - Atu3010 0.63 +0.8 7,194 + Atu3010 0.64 +1.3 7,202 - Atu3010 0.65 -1.1 7,311 + Atu3010 0.77 +1.0 7,357 + Atu3010 0.81 +1.9 7,364 + Atu3010 0.82 +1.7 7,365 + Atu3010 0.82 +0.6 7,366 - Atu3010 0.82 +1.0 7,383 - Atu3010 0.84 +0.8 7,403 + Atu3010 0.86 +0.8 7,403 + Atu3010 0.86 +0.3 7,411 - Atu3010 0.87 +1.4 7,411 - Atu3010 0.87 +3.6 7,411 - Atu3010 0.87 +0.5 7,429 - Atu3010 0.89 +1.4 7,515 + +2.3
Or see this region's nucleotide sequence