Experiment: D-Leucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0588 and Atu0589 are separated by 77 nucleotides Atu0589 and Atu0590 are separated by 17 nucleotides Atu0590 and Atu0591 are separated by 277 nucleotides
Atu0588: Atu0588 - hypothetical protein, at 570,443 to 572,206
Atu0588
Atu0589: Atu0589 - methylenetetrahydrofolate dehydrogenase, at 572,284 to 573,183
Atu0589
Atu0590: Atu0590 - transcriptional regulator repressor, at 573,201 to 574,226
Atu0590
Atu0591: Atu0591 - ABC transporter, substrate binding protein (alpha-glucoside), at 574,504 to 575,865
Atu0591
Position (kb) 573
574
575 Strain fitness (log2 ratio) -2
-1
0
1
2 at 572.248 kb on + strand at 572.256 kb on - strand at 572.259 kb on + strand at 572.281 kb on - strand at 573.159 kb on + strand at 573.167 kb on - strand at 573.167 kb on - strand at 573.269 kb on + strand at 573.278 kb on + strand at 573.292 kb on - strand at 573.328 kb on - strand, within Atu0590 at 573.439 kb on - strand, within Atu0590 at 573.458 kb on + strand, within Atu0590 at 573.583 kb on + strand, within Atu0590 at 573.650 kb on + strand, within Atu0590 at 573.677 kb on - strand, within Atu0590 at 573.686 kb on + strand, within Atu0590 at 573.691 kb on + strand, within Atu0590 at 573.764 kb on - strand, within Atu0590 at 573.806 kb on - strand, within Atu0590 at 573.813 kb on + strand, within Atu0590 at 573.957 kb on + strand, within Atu0590 at 573.965 kb on - strand, within Atu0590 at 573.982 kb on + strand, within Atu0590 at 574.017 kb on - strand, within Atu0590 at 574.048 kb on + strand, within Atu0590 at 574.154 kb on - strand at 574.154 kb on - strand at 574.154 kb on - strand at 574.262 kb on + strand at 574.485 kb on - strand at 574.537 kb on + strand at 574.626 kb on + strand at 574.722 kb on - strand, within Atu0591 at 574.811 kb on - strand, within Atu0591 at 574.811 kb on - strand, within Atu0591 at 574.908 kb on - strand, within Atu0591 at 574.935 kb on + strand, within Atu0591 at 574.938 kb on - strand, within Atu0591 at 574.970 kb on - strand, within Atu0591 at 575.030 kb on - strand, within Atu0591 at 575.056 kb on + strand, within Atu0591 at 575.056 kb on + strand, within Atu0591 at 575.065 kb on + strand, within Atu0591 at 575.073 kb on - strand, within Atu0591 at 575.083 kb on + strand, within Atu0591 at 575.148 kb on - strand, within Atu0591 at 575.222 kb on - strand, within Atu0591
Per-strain Table
Position Strand Gene LocusTag Fraction D-Leucrose (C) remove 572,248 + -0.6 572,256 - +0.0 572,259 + +0.1 572,281 - +0.1 573,159 + +0.4 573,167 - -0.1 573,167 - -0.3 573,269 + +1.5 573,278 + +0.4 573,292 - +1.3 573,328 - Atu0590 0.12 -0.5 573,439 - Atu0590 0.23 +1.5 573,458 + Atu0590 0.25 +2.6 573,583 + Atu0590 0.37 +1.3 573,650 + Atu0590 0.44 +1.5 573,677 - Atu0590 0.46 +1.6 573,686 + Atu0590 0.47 +1.4 573,691 + Atu0590 0.48 +1.9 573,764 - Atu0590 0.55 +1.9 573,806 - Atu0590 0.59 +1.6 573,813 + Atu0590 0.60 +2.3 573,957 + Atu0590 0.74 +1.1 573,965 - Atu0590 0.74 +1.2 573,982 + Atu0590 0.76 +2.1 574,017 - Atu0590 0.80 +2.3 574,048 + Atu0590 0.83 +1.1 574,154 - +1.9 574,154 - +1.5 574,154 - +1.6 574,262 + -0.5 574,485 - +0.6 574,537 + -0.1 574,626 + -1.2 574,722 - Atu0591 0.16 -1.3 574,811 - Atu0591 0.23 -1.2 574,811 - Atu0591 0.23 +1.8 574,908 - Atu0591 0.30 -1.2 574,935 + Atu0591 0.32 -1.6 574,938 - Atu0591 0.32 +0.3 574,970 - Atu0591 0.34 -2.0 575,030 - Atu0591 0.39 -1.5 575,056 + Atu0591 0.41 -0.8 575,056 + Atu0591 0.41 -1.1 575,065 + Atu0591 0.41 -1.2 575,073 - Atu0591 0.42 -0.9 575,083 + Atu0591 0.43 -1.3 575,148 - Atu0591 0.47 -0.4 575,222 - Atu0591 0.53 -0.2
Or see this region's nucleotide sequence