Strain Fitness in Agrobacterium fabrum C58 around Atu0290

Experiment: D-Leucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0289 and Atu0290 are separated by 61 nucleotidesAtu0290 and Atu0291 are separated by 426 nucleotides Atu0289: Atu0289 - Sun protein, at 283,635 to 284,924 Atu0289 Atu0290: Atu0290 - rare lipoprotein A, at 284,986 to 285,354 Atu0290 Atu0291: Atu0291 - hypothetical protein, at 285,781 to 286,653 Atu0291 Position (kb) 284 285 286Strain fitness (log2 ratio) -2 -1 0 1 2at 284.005 kb on + strand, within Atu0289at 284.009 kb on - strand, within Atu0289at 284.067 kb on + strand, within Atu0289at 284.075 kb on - strand, within Atu0289at 284.148 kb on + strand, within Atu0289at 284.156 kb on - strand, within Atu0289at 284.222 kb on - strand, within Atu0289at 284.274 kb on + strand, within Atu0289at 284.282 kb on - strand, within Atu0289at 284.287 kb on + strand, within Atu0289at 284.295 kb on - strand, within Atu0289at 284.341 kb on - strand, within Atu0289at 284.353 kb on + strand, within Atu0289at 284.456 kb on + strand, within Atu0289at 284.456 kb on + strand, within Atu0289at 284.456 kb on + strand, within Atu0289at 284.456 kb on + strand, within Atu0289at 284.456 kb on + strand, within Atu0289at 284.456 kb on + strand, within Atu0289at 284.456 kb on + strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.464 kb on - strand, within Atu0289at 284.465 kb on - strand, within Atu0289at 284.496 kb on - strand, within Atu0289at 284.497 kb on + strand, within Atu0289at 284.691 kb on + strand, within Atu0289at 284.719 kb on + strand, within Atu0289at 284.740 kb on - strand, within Atu0289at 284.830 kb on + strandat 284.934 kb on - strandat 284.985 kb on - strandat 284.985 kb on - strandat 285.021 kb on - strandat 285.023 kb on - strand, within Atu0290at 285.059 kb on + strand, within Atu0290at 285.119 kb on + strand, within Atu0290at 285.203 kb on - strand, within Atu0290at 285.216 kb on + strand, within Atu0290at 285.235 kb on + strand, within Atu0290at 285.240 kb on + strand, within Atu0290at 285.259 kb on + strand, within Atu0290at 285.280 kb on + strand, within Atu0290at 285.306 kb on - strand, within Atu0290at 285.410 kb on + strandat 285.410 kb on + strandat 285.418 kb on - strandat 285.418 kb on - strandat 285.777 kb on + strandat 285.965 kb on - strand, within Atu0291at 285.966 kb on + strand, within Atu0291at 285.970 kb on - strand, within Atu0291at 285.985 kb on + strand, within Atu0291at 286.004 kb on + strand, within Atu0291at 286.004 kb on + strand, within Atu0291at 286.004 kb on + strand, within Atu0291at 286.007 kb on - strand, within Atu0291at 286.012 kb on - strand, within Atu0291at 286.144 kb on - strand, within Atu0291at 286.197 kb on + strand, within Atu0291at 286.229 kb on + strand, within Atu0291at 286.229 kb on + strand, within Atu0291at 286.243 kb on - strand, within Atu0291at 286.283 kb on + strand, within Atu0291

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Leucrose (C)
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284,005 + Atu0289 0.29 +0.2
284,009 - Atu0289 0.29 -0.2
284,067 + Atu0289 0.33 -1.0
284,075 - Atu0289 0.34 -1.0
284,148 + Atu0289 0.40 -0.0
284,156 - Atu0289 0.40 -0.5
284,222 - Atu0289 0.46 +0.2
284,274 + Atu0289 0.50 -0.1
284,282 - Atu0289 0.50 -0.2
284,287 + Atu0289 0.51 +0.4
284,295 - Atu0289 0.51 -0.7
284,341 - Atu0289 0.55 +0.1
284,353 + Atu0289 0.56 +0.4
284,456 + Atu0289 0.64 -0.7
284,456 + Atu0289 0.64 +1.3
284,456 + Atu0289 0.64 -1.3
284,456 + Atu0289 0.64 -0.1
284,456 + Atu0289 0.64 -0.5
284,456 + Atu0289 0.64 -0.6
284,456 + Atu0289 0.64 -0.4
284,464 - Atu0289 0.64 -0.6
284,464 - Atu0289 0.64 -1.0
284,464 - Atu0289 0.64 -0.5
284,464 - Atu0289 0.64 -0.4
284,464 - Atu0289 0.64 -0.6
284,464 - Atu0289 0.64 +0.2
284,464 - Atu0289 0.64 -0.7
284,464 - Atu0289 0.64 -1.4
284,464 - Atu0289 0.64 -0.6
284,464 - Atu0289 0.64 -1.5
284,464 - Atu0289 0.64 +0.3
284,464 - Atu0289 0.64 -0.2
284,464 - Atu0289 0.64 +0.4
284,464 - Atu0289 0.64 -1.8
284,464 - Atu0289 0.64 -1.6
284,464 - Atu0289 0.64 -0.8
284,464 - Atu0289 0.64 -0.3
284,464 - Atu0289 0.64 -0.1
284,464 - Atu0289 0.64 -0.1
284,464 - Atu0289 0.64 -0.6
284,464 - Atu0289 0.64 -0.1
284,465 - Atu0289 0.64 -0.1
284,496 - Atu0289 0.67 -0.6
284,497 + Atu0289 0.67 -0.1
284,691 + Atu0289 0.82 +0.1
284,719 + Atu0289 0.84 +0.2
284,740 - Atu0289 0.86 -0.0
284,830 + -0.2
284,934 - +0.4
284,985 - -0.0
284,985 - +0.2
285,021 - +0.6
285,023 - Atu0290 0.10 -0.2
285,059 + Atu0290 0.20 +0.5
285,119 + Atu0290 0.36 +1.1
285,203 - Atu0290 0.59 +0.5
285,216 + Atu0290 0.62 +0.3
285,235 + Atu0290 0.67 -0.1
285,240 + Atu0290 0.69 +1.7
285,259 + Atu0290 0.74 +0.3
285,280 + Atu0290 0.80 +1.9
285,306 - Atu0290 0.87 +0.8
285,410 + -1.5
285,410 + +0.9
285,418 - +0.1
285,418 - +0.2
285,777 + +0.1
285,965 - Atu0291 0.21 -0.5
285,966 + Atu0291 0.21 -0.4
285,970 - Atu0291 0.22 -0.2
285,985 + Atu0291 0.23 +0.5
286,004 + Atu0291 0.26 +0.4
286,004 + Atu0291 0.26 -0.4
286,004 + Atu0291 0.26 +0.1
286,007 - Atu0291 0.26 +0.1
286,012 - Atu0291 0.26 -0.2
286,144 - Atu0291 0.42 -1.4
286,197 + Atu0291 0.48 +0.8
286,229 + Atu0291 0.51 -0.4
286,229 + Atu0291 0.51 +0.6
286,243 - Atu0291 0.53 -0.2
286,283 + Atu0291 0.58 +1.2

Or see this region's nucleotide sequence