Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_845 and PfGW456L13_846 are separated by 12 nucleotides PfGW456L13_846 and PfGW456L13_847 overlap by 18 nucleotides PfGW456L13_847 and PfGW456L13_848 overlap by 1 nucleotides PfGW456L13_848 and PfGW456L13_849 are separated by 490 nucleotides PfGW456L13_849 and PfGW456L13_850 are separated by 7 nucleotides
PfGW456L13_845 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 952,260 to 953,507
_845
PfGW456L13_846 - Lipoprotein LppL-related protein, at 953,520 to 953,645
_846
PfGW456L13_847 - hypothetical protein, at 953,628 to 953,906
_847
PfGW456L13_848 - Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly, at 953,906 to 954,238
_848
PfGW456L13_849 - Regulator of nucleoside diphosphate kinase, at 954,729 to 955,139
_849
PfGW456L13_850 - Adenylate cyclase (EC 4.6.1.1), at 955,147 to 957,990
_850
Position (kb) 953
954
955 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 952.963 kb on + strand, within PfGW456L13_845 at 952.963 kb on + strand, within PfGW456L13_845 at 952.963 kb on + strand, within PfGW456L13_845 at 952.963 kb on + strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 952.964 kb on - strand, within PfGW456L13_845 at 953.026 kb on + strand, within PfGW456L13_845 at 953.339 kb on - strand, within PfGW456L13_845 at 953.377 kb on + strand, within PfGW456L13_845 at 953.378 kb on - strand, within PfGW456L13_845 at 953.387 kb on - strand at 953.387 kb on - strand at 953.387 kb on - strand at 953.387 kb on - strand at 953.419 kb on + strand at 953.419 kb on + strand at 953.420 kb on - strand at 953.420 kb on - strand at 953.420 kb on - strand at 953.420 kb on - strand at 953.420 kb on - strand at 953.420 kb on - strand at 953.429 kb on + strand at 953.492 kb on - strand at 953.495 kb on + strand at 953.496 kb on - strand at 953.496 kb on - strand at 953.496 kb on - strand at 953.518 kb on + strand at 953.518 kb on + strand at 953.518 kb on + strand at 953.519 kb on - strand at 953.519 kb on - strand at 953.519 kb on - strand at 953.522 kb on - strand at 953.522 kb on - strand at 953.522 kb on - strand at 953.527 kb on + strand at 953.527 kb on + strand at 953.528 kb on - strand at 953.528 kb on - strand at 953.528 kb on - strand at 953.720 kb on - strand, within PfGW456L13_847 at 953.720 kb on - strand, within PfGW456L13_847 at 953.720 kb on - strand, within PfGW456L13_847 at 953.734 kb on - strand, within PfGW456L13_847 at 953.735 kb on + strand, within PfGW456L13_847 at 953.759 kb on - strand, within PfGW456L13_847 at 953.830 kb on - strand, within PfGW456L13_847 at 953.858 kb on + strand, within PfGW456L13_847 at 953.859 kb on - strand, within PfGW456L13_847 at 954.122 kb on + strand, within PfGW456L13_848 at 954.190 kb on + strand, within PfGW456L13_848 at 954.190 kb on + strand, within PfGW456L13_848 at 954.191 kb on - strand, within PfGW456L13_848 at 954.191 kb on - strand, within PfGW456L13_848 at 954.283 kb on - strand at 954.283 kb on - strand at 954.380 kb on + strand at 954.380 kb on + strand at 954.381 kb on - strand at 954.381 kb on - strand at 954.381 kb on - strand at 954.413 kb on + strand at 954.413 kb on + strand at 954.414 kb on - strand at 954.460 kb on - strand at 954.460 kb on - strand at 954.573 kb on + strand at 954.573 kb on + strand at 954.573 kb on + strand at 954.573 kb on + strand at 954.574 kb on - strand at 954.574 kb on - strand at 954.608 kb on - strand at 954.608 kb on - strand at 954.610 kb on - strand at 954.627 kb on - strand at 954.939 kb on + strand, within PfGW456L13_849 at 954.940 kb on - strand, within PfGW456L13_849 at 954.940 kb on - strand, within PfGW456L13_849 at 954.940 kb on - strand, within PfGW456L13_849 at 955.205 kb on + strand at 955.205 kb on + strand at 955.206 kb on - strand at 955.206 kb on - strand at 955.206 kb on - strand at 955.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 952,963 + PfGW456L13_845 0.56 -1.9 952,963 + PfGW456L13_845 0.56 -1.2 952,963 + PfGW456L13_845 0.56 -1.3 952,963 + PfGW456L13_845 0.56 -0.5 952,964 - PfGW456L13_845 0.56 -1.3 952,964 - PfGW456L13_845 0.56 -1.0 952,964 - PfGW456L13_845 0.56 -1.4 952,964 - PfGW456L13_845 0.56 -0.7 952,964 - PfGW456L13_845 0.56 -2.4 952,964 - PfGW456L13_845 0.56 -0.6 952,964 - PfGW456L13_845 0.56 -1.6 952,964 - PfGW456L13_845 0.56 -2.7 953,026 + PfGW456L13_845 0.61 -1.3 953,339 - PfGW456L13_845 0.86 -1.8 953,377 + PfGW456L13_845 0.90 -0.8 953,378 - PfGW456L13_845 0.90 -1.9 953,387 - -0.8 953,387 - -0.1 953,387 - -1.6 953,387 - -2.4 953,419 + +0.1 953,419 + -0.4 953,420 - -0.1 953,420 - -1.2 953,420 - -0.7 953,420 - -1.9 953,420 - -0.6 953,420 - -1.4 953,429 + +0.3 953,492 - -0.2 953,495 + -0.6 953,496 - -1.3 953,496 - -0.6 953,496 - -2.0 953,518 + -0.6 953,518 + -1.2 953,518 + +0.5 953,519 - +2.8 953,519 - +0.1 953,519 - -1.1 953,522 - +2.6 953,522 - -1.3 953,522 - -1.8 953,527 + -1.5 953,527 + +0.1 953,528 - +0.9 953,528 - -0.5 953,528 - -0.3 953,720 - PfGW456L13_847 0.33 -0.7 953,720 - PfGW456L13_847 0.33 -0.2 953,720 - PfGW456L13_847 0.33 -0.7 953,734 - PfGW456L13_847 0.38 -2.6 953,735 + PfGW456L13_847 0.38 -1.4 953,759 - PfGW456L13_847 0.47 -0.2 953,830 - PfGW456L13_847 0.72 -1.4 953,858 + PfGW456L13_847 0.82 -2.2 953,859 - PfGW456L13_847 0.83 +1.6 954,122 + PfGW456L13_848 0.65 +2.9 954,190 + PfGW456L13_848 0.85 +1.3 954,190 + PfGW456L13_848 0.85 +2.3 954,191 - PfGW456L13_848 0.86 +4.0 954,191 - PfGW456L13_848 0.86 -0.7 954,283 - -2.0 954,283 - -1.9 954,380 + +0.3 954,380 + +1.7 954,381 - -2.3 954,381 - -1.9 954,381 - -2.0 954,413 + -2.0 954,413 + -2.7 954,414 - +1.3 954,460 - +0.7 954,460 - -0.7 954,573 + -1.4 954,573 + -2.0 954,573 + -1.4 954,573 + +0.3 954,574 - -2.7 954,574 - +0.8 954,608 - -1.3 954,608 - +0.4 954,610 - +1.3 954,627 - -0.9 954,939 + PfGW456L13_849 0.51 -1.5 954,940 - PfGW456L13_849 0.51 +1.7 954,940 - PfGW456L13_849 0.51 -1.6 954,940 - PfGW456L13_849 0.51 -1.4 955,205 + -1.3 955,205 + +0.6 955,206 - -0.7 955,206 - -1.6 955,206 - -3.5 955,206 - -1.3
Or see this region's nucleotide sequence