Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_780 and PfGW456L13_781 are separated by 57 nucleotides PfGW456L13_781 and PfGW456L13_782 are separated by 167 nucleotides PfGW456L13_782 and PfGW456L13_783 are separated by 12 nucleotides
PfGW456L13_780 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2), at 883,799 to 885,904
_780
PfGW456L13_781 - DNA-directed RNA polymerase omega subunit (EC 2.7.7.6), at 885,962 to 886,225
_781
PfGW456L13_782 - Guanylate kinase (EC 2.7.4.8), at 886,393 to 887,013
_782
PfGW456L13_783 - Protein YicC, at 887,026 to 887,889
_783
Position (kb) 886
887
888 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 885.943 kb on - strand at 885.958 kb on - strand at 885.958 kb on - strand at 885.958 kb on - strand at 885.958 kb on - strand at 885.958 kb on - strand at 885.958 kb on - strand at 886.110 kb on - strand, within PfGW456L13_781 at 886.110 kb on - strand, within PfGW456L13_781 at 886.197 kb on - strand, within PfGW456L13_781 at 886.197 kb on - strand, within PfGW456L13_781 at 886.238 kb on - strand at 886.250 kb on - strand at 886.250 kb on - strand at 886.352 kb on + strand at 886.352 kb on + strand at 886.353 kb on - strand at 886.353 kb on - strand at 886.360 kb on + strand at 886.360 kb on + strand at 886.360 kb on + strand at 886.360 kb on + strand at 886.361 kb on - strand at 886.361 kb on - strand at 886.361 kb on - strand at 886.361 kb on - strand at 886.361 kb on - strand at 887.035 kb on - strand at 887.127 kb on + strand, within PfGW456L13_783 at 887.127 kb on + strand, within PfGW456L13_783 at 887.127 kb on + strand, within PfGW456L13_783 at 887.128 kb on - strand, within PfGW456L13_783 at 887.674 kb on - strand, within PfGW456L13_783 at 887.719 kb on + strand, within PfGW456L13_783 at 887.719 kb on + strand, within PfGW456L13_783 at 887.720 kb on - strand, within PfGW456L13_783 at 887.720 kb on - strand, within PfGW456L13_783 at 887.895 kb on + strand at 887.896 kb on - strand at 887.953 kb on + strand at 887.954 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 885,943 - +0.6 885,958 - +2.9 885,958 - +2.6 885,958 - -0.5 885,958 - +0.8 885,958 - -0.2 885,958 - +0.4 886,110 - PfGW456L13_781 0.56 +1.1 886,110 - PfGW456L13_781 0.56 +0.5 886,197 - PfGW456L13_781 0.89 +0.1 886,197 - PfGW456L13_781 0.89 +0.3 886,238 - -0.3 886,250 - -0.3 886,250 - -1.3 886,352 + +2.4 886,352 + +1.3 886,353 - -0.8 886,353 - -1.1 886,360 + +0.3 886,360 + +1.1 886,360 + -1.7 886,360 + -0.6 886,361 - +1.0 886,361 - -1.1 886,361 - -3.5 886,361 - +0.8 886,361 - -1.9 887,035 - -0.5 887,127 + PfGW456L13_783 0.12 -2.0 887,127 + PfGW456L13_783 0.12 -0.8 887,127 + PfGW456L13_783 0.12 +0.3 887,128 - PfGW456L13_783 0.12 -1.9 887,674 - PfGW456L13_783 0.75 -0.9 887,719 + PfGW456L13_783 0.80 -1.6 887,719 + PfGW456L13_783 0.80 -1.6 887,720 - PfGW456L13_783 0.80 -1.2 887,720 - PfGW456L13_783 0.80 +1.7 887,895 + -0.1 887,896 - +2.7 887,953 + +2.1 887,954 - -1.2
Or see this region's nucleotide sequence