Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_462

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_461 and PfGW456L13_462 are separated by 26 nucleotidesPfGW456L13_462 and PfGW456L13_463 are separated by 21 nucleotidesPfGW456L13_463 and PfGW456L13_464 are separated by 77 nucleotides PfGW456L13_461 - putative RecF protein, at 526,169 to 527,365 _461 PfGW456L13_462 - YD repeat protein, at 527,392 to 528,111 _462 PfGW456L13_463 - hypothetical protein, at 528,133 to 528,981 _463 PfGW456L13_464 - Methionine ABC transporter substrate-binding protein, at 529,059 to 529,841 _464 Position (kb) 527 528 529Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 526.559 kb on + strand, within PfGW456L13_461at 526.614 kb on - strand, within PfGW456L13_461at 526.686 kb on + strand, within PfGW456L13_461at 526.686 kb on + strand, within PfGW456L13_461at 526.686 kb on + strand, within PfGW456L13_461at 526.686 kb on + strand, within PfGW456L13_461at 526.686 kb on + strand, within PfGW456L13_461at 526.686 kb on + strand, within PfGW456L13_461at 526.687 kb on - strand, within PfGW456L13_461at 526.687 kb on - strand, within PfGW456L13_461at 526.687 kb on - strand, within PfGW456L13_461at 526.687 kb on - strand, within PfGW456L13_461at 526.687 kb on - strand, within PfGW456L13_461at 526.687 kb on - strand, within PfGW456L13_461at 526.687 kb on - strand, within PfGW456L13_461at 526.687 kb on - strand, within PfGW456L13_461at 526.687 kb on - strand, within PfGW456L13_461at 526.687 kb on - strand, within PfGW456L13_461at 526.687 kb on - strand, within PfGW456L13_461at 526.687 kb on - strand, within PfGW456L13_461at 526.796 kb on + strand, within PfGW456L13_461at 526.797 kb on - strand, within PfGW456L13_461at 526.797 kb on - strand, within PfGW456L13_461at 526.797 kb on - strand, within PfGW456L13_461at 527.131 kb on - strand, within PfGW456L13_461at 527.131 kb on - strand, within PfGW456L13_461at 527.218 kb on - strand, within PfGW456L13_461at 527.390 kb on + strandat 527.390 kb on + strandat 527.391 kb on - strandat 527.472 kb on + strand, within PfGW456L13_462at 527.472 kb on + strand, within PfGW456L13_462at 527.473 kb on - strand, within PfGW456L13_462at 527.473 kb on - strand, within PfGW456L13_462at 527.473 kb on - strand, within PfGW456L13_462at 527.482 kb on - strand, within PfGW456L13_462at 527.482 kb on - strand, within PfGW456L13_462at 527.482 kb on - strand, within PfGW456L13_462at 527.553 kb on + strand, within PfGW456L13_462at 527.553 kb on + strand, within PfGW456L13_462at 527.554 kb on - strand, within PfGW456L13_462at 527.554 kb on - strand, within PfGW456L13_462at 527.611 kb on + strand, within PfGW456L13_462at 527.611 kb on + strand, within PfGW456L13_462at 527.612 kb on - strand, within PfGW456L13_462at 527.612 kb on - strand, within PfGW456L13_462at 527.612 kb on - strand, within PfGW456L13_462at 527.612 kb on - strand, within PfGW456L13_462at 527.620 kb on + strand, within PfGW456L13_462at 527.621 kb on - strand, within PfGW456L13_462at 527.621 kb on - strand, within PfGW456L13_462at 527.621 kb on - strand, within PfGW456L13_462at 527.727 kb on + strand, within PfGW456L13_462at 527.727 kb on + strand, within PfGW456L13_462at 527.728 kb on - strand, within PfGW456L13_462at 527.728 kb on - strand, within PfGW456L13_462at 527.728 kb on - strand, within PfGW456L13_462at 527.743 kb on + strand, within PfGW456L13_462at 527.743 kb on + strand, within PfGW456L13_462at 527.743 kb on + strand, within PfGW456L13_462at 527.743 kb on + strand, within PfGW456L13_462at 527.743 kb on + strand, within PfGW456L13_462at 527.752 kb on - strand, within PfGW456L13_462at 527.766 kb on + strand, within PfGW456L13_462at 527.766 kb on + strand, within PfGW456L13_462at 527.767 kb on - strand, within PfGW456L13_462at 527.788 kb on - strand, within PfGW456L13_462at 527.788 kb on - strand, within PfGW456L13_462at 527.788 kb on - strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.877 kb on - strand, within PfGW456L13_462at 527.877 kb on - strand, within PfGW456L13_462at 527.877 kb on - strand, within PfGW456L13_462at 527.877 kb on - strand, within PfGW456L13_462at 527.877 kb on - strand, within PfGW456L13_462at 527.877 kb on - strand, within PfGW456L13_462at 527.883 kb on - strand, within PfGW456L13_462at 527.955 kb on + strand, within PfGW456L13_462at 527.955 kb on + strand, within PfGW456L13_462at 527.955 kb on + strand, within PfGW456L13_462at 527.955 kb on + strand, within PfGW456L13_462at 527.955 kb on + strand, within PfGW456L13_462at 527.955 kb on + strand, within PfGW456L13_462at 527.955 kb on + strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 528.047 kb on + strandat 528.047 kb on + strandat 528.047 kb on + strandat 528.047 kb on + strandat 528.048 kb on - strandat 528.048 kb on - strandat 528.048 kb on - strandat 528.048 kb on - strandat 528.054 kb on - strandat 528.054 kb on - strandat 528.054 kb on - strandat 528.153 kb on - strandat 528.243 kb on - strand, within PfGW456L13_463at 528.243 kb on - strand, within PfGW456L13_463at 528.283 kb on + strand, within PfGW456L13_463at 528.318 kb on + strand, within PfGW456L13_463at 528.318 kb on + strand, within PfGW456L13_463at 528.318 kb on + strand, within PfGW456L13_463at 528.318 kb on + strand, within PfGW456L13_463at 528.318 kb on + strand, within PfGW456L13_463at 528.319 kb on - strand, within PfGW456L13_463at 528.319 kb on - strand, within PfGW456L13_463at 528.319 kb on - strand, within PfGW456L13_463at 528.383 kb on + strand, within PfGW456L13_463at 528.384 kb on - strand, within PfGW456L13_463at 528.491 kb on + strand, within PfGW456L13_463at 528.491 kb on + strand, within PfGW456L13_463at 528.492 kb on - strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.586 kb on - strand, within PfGW456L13_463at 528.586 kb on - strand, within PfGW456L13_463at 528.586 kb on - strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.589 kb on - strand, within PfGW456L13_463at 528.589 kb on - strand, within PfGW456L13_463at 528.589 kb on - strand, within PfGW456L13_463at 528.589 kb on - strand, within PfGW456L13_463at 528.649 kb on + strand, within PfGW456L13_463at 528.649 kb on + strand, within PfGW456L13_463at 528.649 kb on + strand, within PfGW456L13_463at 528.649 kb on + strand, within PfGW456L13_463at 528.649 kb on + strand, within PfGW456L13_463at 528.649 kb on + strand, within PfGW456L13_463at 528.650 kb on - strand, within PfGW456L13_463at 528.650 kb on - strand, within PfGW456L13_463at 528.650 kb on - strand, within PfGW456L13_463at 528.650 kb on - strand, within PfGW456L13_463at 528.650 kb on - strand, within PfGW456L13_463at 528.650 kb on - strand, within PfGW456L13_463at 528.660 kb on - strand, within PfGW456L13_463at 528.667 kb on - strand, within PfGW456L13_463at 528.763 kb on + strand, within PfGW456L13_463at 528.763 kb on + strand, within PfGW456L13_463at 528.763 kb on + strand, within PfGW456L13_463at 528.763 kb on + strand, within PfGW456L13_463at 528.764 kb on - strand, within PfGW456L13_463at 528.764 kb on - strand, within PfGW456L13_463at 528.764 kb on - strand, within PfGW456L13_463at 528.800 kb on + strand, within PfGW456L13_463at 528.800 kb on + strand, within PfGW456L13_463at 528.801 kb on - strand, within PfGW456L13_463at 528.801 kb on - strand, within PfGW456L13_463at 528.801 kb on - strand, within PfGW456L13_463at 528.801 kb on - strand, within PfGW456L13_463at 528.801 kb on - strand, within PfGW456L13_463at 528.801 kb on - strand, within PfGW456L13_463at 528.801 kb on - strand, within PfGW456L13_463at 528.805 kb on + strand, within PfGW456L13_463at 528.806 kb on - strand, within PfGW456L13_463at 528.979 kb on + strandat 528.979 kb on + strandat 528.979 kb on + strandat 528.980 kb on - strandat 528.980 kb on - strandat 528.980 kb on - strandat 529.011 kb on + strandat 529.087 kb on + strandat 529.087 kb on + strandat 529.088 kb on - strandat 529.088 kb on - strandat 529.088 kb on - strandat 529.088 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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526,559 + PfGW456L13_461 0.33 -1.0
526,614 - PfGW456L13_461 0.37 +1.5
526,686 + PfGW456L13_461 0.43 +0.0
526,686 + PfGW456L13_461 0.43 +2.0
526,686 + PfGW456L13_461 0.43 -1.2
526,686 + PfGW456L13_461 0.43 -1.9
526,686 + PfGW456L13_461 0.43 +0.1
526,686 + PfGW456L13_461 0.43 -1.0
526,687 - PfGW456L13_461 0.43 -2.9
526,687 - PfGW456L13_461 0.43 -1.5
526,687 - PfGW456L13_461 0.43 -2.0
526,687 - PfGW456L13_461 0.43 +1.3
526,687 - PfGW456L13_461 0.43 -0.6
526,687 - PfGW456L13_461 0.43 -2.3
526,687 - PfGW456L13_461 0.43 -0.4
526,687 - PfGW456L13_461 0.43 -0.7
526,687 - PfGW456L13_461 0.43 +0.8
526,687 - PfGW456L13_461 0.43 -0.2
526,687 - PfGW456L13_461 0.43 +1.7
526,687 - PfGW456L13_461 0.43 -0.8
526,796 + PfGW456L13_461 0.52 -2.1
526,797 - PfGW456L13_461 0.52 -2.3
526,797 - PfGW456L13_461 0.52 +0.3
526,797 - PfGW456L13_461 0.52 +0.9
527,131 - PfGW456L13_461 0.80 -1.5
527,131 - PfGW456L13_461 0.80 -0.6
527,218 - PfGW456L13_461 0.88 +0.8
527,390 + -1.8
527,390 + +1.6
527,391 - -1.1
527,472 + PfGW456L13_462 0.11 -1.4
527,472 + PfGW456L13_462 0.11 -0.5
527,473 - PfGW456L13_462 0.11 -0.6
527,473 - PfGW456L13_462 0.11 -2.6
527,473 - PfGW456L13_462 0.11 +1.4
527,482 - PfGW456L13_462 0.12 -1.9
527,482 - PfGW456L13_462 0.12 -0.3
527,482 - PfGW456L13_462 0.12 +0.1
527,553 + PfGW456L13_462 0.22 +0.3
527,553 + PfGW456L13_462 0.22 +1.2
527,554 - PfGW456L13_462 0.23 -0.1
527,554 - PfGW456L13_462 0.23 -1.4
527,611 + PfGW456L13_462 0.30 +1.0
527,611 + PfGW456L13_462 0.30 -1.7
527,612 - PfGW456L13_462 0.31 -0.7
527,612 - PfGW456L13_462 0.31 +0.8
527,612 - PfGW456L13_462 0.31 -1.2
527,612 - PfGW456L13_462 0.31 -0.2
527,620 + PfGW456L13_462 0.32 +0.6
527,621 - PfGW456L13_462 0.32 -1.3
527,621 - PfGW456L13_462 0.32 +1.4
527,621 - PfGW456L13_462 0.32 -0.7
527,727 + PfGW456L13_462 0.47 -0.5
527,727 + PfGW456L13_462 0.47 +0.8
527,728 - PfGW456L13_462 0.47 -2.2
527,728 - PfGW456L13_462 0.47 -0.2
527,728 - PfGW456L13_462 0.47 +1.1
527,743 + PfGW456L13_462 0.49 +0.2
527,743 + PfGW456L13_462 0.49 -2.5
527,743 + PfGW456L13_462 0.49 -1.6
527,743 + PfGW456L13_462 0.49 +0.3
527,743 + PfGW456L13_462 0.49 -0.9
527,752 - PfGW456L13_462 0.50 -0.7
527,766 + PfGW456L13_462 0.52 -0.2
527,766 + PfGW456L13_462 0.52 -1.8
527,767 - PfGW456L13_462 0.52 +1.3
527,788 - PfGW456L13_462 0.55 +0.9
527,788 - PfGW456L13_462 0.55 -0.4
527,788 - PfGW456L13_462 0.55 +1.1
527,876 + PfGW456L13_462 0.67 +1.5
527,876 + PfGW456L13_462 0.67 -0.8
527,876 + PfGW456L13_462 0.67 -0.8
527,876 + PfGW456L13_462 0.67 -0.2
527,876 + PfGW456L13_462 0.67 +0.4
527,876 + PfGW456L13_462 0.67 -1.6
527,876 + PfGW456L13_462 0.67 -2.6
527,876 + PfGW456L13_462 0.67 -2.4
527,877 - PfGW456L13_462 0.67 +1.1
527,877 - PfGW456L13_462 0.67 +1.5
527,877 - PfGW456L13_462 0.67 -0.3
527,877 - PfGW456L13_462 0.67 +0.1
527,877 - PfGW456L13_462 0.67 -1.4
527,877 - PfGW456L13_462 0.67 -1.7
527,883 - PfGW456L13_462 0.68 +1.9
527,955 + PfGW456L13_462 0.78 +0.5
527,955 + PfGW456L13_462 0.78 +1.2
527,955 + PfGW456L13_462 0.78 -1.3
527,955 + PfGW456L13_462 0.78 +1.6
527,955 + PfGW456L13_462 0.78 +3.1
527,955 + PfGW456L13_462 0.78 +2.0
527,955 + PfGW456L13_462 0.78 +0.3
527,956 - PfGW456L13_462 0.78 -1.2
527,956 - PfGW456L13_462 0.78 -0.6
527,956 - PfGW456L13_462 0.78 +0.4
527,956 - PfGW456L13_462 0.78 -1.2
527,956 - PfGW456L13_462 0.78 -2.0
527,956 - PfGW456L13_462 0.78 +0.1
527,956 - PfGW456L13_462 0.78 +1.9
527,956 - PfGW456L13_462 0.78 -1.0
528,047 + -0.4
528,047 + +1.7
528,047 + +2.2
528,047 + +0.2
528,048 - -1.0
528,048 - -0.1
528,048 - -1.4
528,048 - -2.2
528,054 - +1.4
528,054 - +0.0
528,054 - +2.8
528,153 - +1.9
528,243 - PfGW456L13_463 0.13 -2.1
528,243 - PfGW456L13_463 0.13 +1.8
528,283 + PfGW456L13_463 0.18 +0.4
528,318 + PfGW456L13_463 0.22 -2.0
528,318 + PfGW456L13_463 0.22 -0.9
528,318 + PfGW456L13_463 0.22 +1.4
528,318 + PfGW456L13_463 0.22 -1.4
528,318 + PfGW456L13_463 0.22 +2.6
528,319 - PfGW456L13_463 0.22 -2.3
528,319 - PfGW456L13_463 0.22 -1.5
528,319 - PfGW456L13_463 0.22 -2.0
528,383 + PfGW456L13_463 0.29 -0.5
528,384 - PfGW456L13_463 0.30 +1.2
528,491 + PfGW456L13_463 0.42 +1.4
528,491 + PfGW456L13_463 0.42 -0.6
528,492 - PfGW456L13_463 0.42 -1.0
528,585 + PfGW456L13_463 0.53 +2.9
528,585 + PfGW456L13_463 0.53 +0.4
528,585 + PfGW456L13_463 0.53 +1.7
528,585 + PfGW456L13_463 0.53 +1.2
528,585 + PfGW456L13_463 0.53 +0.9
528,585 + PfGW456L13_463 0.53 +0.5
528,585 + PfGW456L13_463 0.53 -2.2
528,585 + PfGW456L13_463 0.53 +1.5
528,586 - PfGW456L13_463 0.53 -0.6
528,586 - PfGW456L13_463 0.53 +0.5
528,586 - PfGW456L13_463 0.53 +1.5
528,588 + PfGW456L13_463 0.54 -1.5
528,588 + PfGW456L13_463 0.54 -2.9
528,588 + PfGW456L13_463 0.54 -2.3
528,588 + PfGW456L13_463 0.54 -1.2
528,588 + PfGW456L13_463 0.54 +1.5
528,588 + PfGW456L13_463 0.54 -0.1
528,588 + PfGW456L13_463 0.54 +0.5
528,588 + PfGW456L13_463 0.54 -1.0
528,588 + PfGW456L13_463 0.54 +1.1
528,589 - PfGW456L13_463 0.54 -1.0
528,589 - PfGW456L13_463 0.54 -0.4
528,589 - PfGW456L13_463 0.54 +2.2
528,589 - PfGW456L13_463 0.54 +1.3
528,649 + PfGW456L13_463 0.61 +0.8
528,649 + PfGW456L13_463 0.61 +0.5
528,649 + PfGW456L13_463 0.61 +0.0
528,649 + PfGW456L13_463 0.61 +1.3
528,649 + PfGW456L13_463 0.61 +0.3
528,649 + PfGW456L13_463 0.61 +1.3
528,650 - PfGW456L13_463 0.61 +0.2
528,650 - PfGW456L13_463 0.61 -0.3
528,650 - PfGW456L13_463 0.61 +0.3
528,650 - PfGW456L13_463 0.61 -1.0
528,650 - PfGW456L13_463 0.61 +0.1
528,650 - PfGW456L13_463 0.61 -2.8
528,660 - PfGW456L13_463 0.62 +0.3
528,667 - PfGW456L13_463 0.63 -2.0
528,763 + PfGW456L13_463 0.74 -2.0
528,763 + PfGW456L13_463 0.74 -0.2
528,763 + PfGW456L13_463 0.74 +0.0
528,763 + PfGW456L13_463 0.74 +0.9
528,764 - PfGW456L13_463 0.74 -1.5
528,764 - PfGW456L13_463 0.74 +0.6
528,764 - PfGW456L13_463 0.74 -0.2
528,800 + PfGW456L13_463 0.79 -2.4
528,800 + PfGW456L13_463 0.79 -1.4
528,801 - PfGW456L13_463 0.79 -1.4
528,801 - PfGW456L13_463 0.79 +1.0
528,801 - PfGW456L13_463 0.79 -1.8
528,801 - PfGW456L13_463 0.79 +2.2
528,801 - PfGW456L13_463 0.79 +2.2
528,801 - PfGW456L13_463 0.79 +0.2
528,801 - PfGW456L13_463 0.79 +0.8
528,805 + PfGW456L13_463 0.79 -2.3
528,806 - PfGW456L13_463 0.79 +0.5
528,979 + +1.4
528,979 + -0.2
528,979 + -1.0
528,980 - +2.2
528,980 - +0.5
528,980 - -0.9
529,011 + -1.2
529,087 + +1.1
529,087 + +0.3
529,088 - +0.4
529,088 - -1.4
529,088 - -0.6
529,088 - -0.4

Or see this region's nucleotide sequence