Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4193

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4192 and PfGW456L13_4193 are separated by 3 nucleotidesPfGW456L13_4193 and PfGW456L13_4194 are separated by 181 nucleotides PfGW456L13_4192 - Septum site-determining protein MinD, at 4,703,697 to 4,704,509 _4192 PfGW456L13_4193 - Cell division topological specificity factor MinE, at 4,704,513 to 4,704,767 _4193 PfGW456L13_4194 - Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70), at 4,704,949 to 4,705,584 _4194 Position (kb) 4704 4705Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4704.840 kb on + strandat 4704.840 kb on + strandat 4704.841 kb on - strandat 4704.861 kb on + strandat 4704.894 kb on + strandat 4704.894 kb on + strandat 4704.894 kb on + strandat 4704.894 kb on + strandat 4704.895 kb on - strandat 4704.895 kb on - strandat 4704.895 kb on - strandat 4704.934 kb on + strandat 4704.935 kb on - strandat 4705.214 kb on - strand, within PfGW456L13_4194at 4705.465 kb on + strand, within PfGW456L13_4194at 4705.466 kb on - strand, within PfGW456L13_4194at 4705.466 kb on - strand, within PfGW456L13_4194at 4705.466 kb on - strand, within PfGW456L13_4194at 4705.754 kb on + strandat 4705.754 kb on + strandat 4705.759 kb on + strandat 4705.760 kb on - strandat 4705.760 kb on - strandat 4705.760 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,704,840 + -2.0
4,704,840 + -0.2
4,704,841 - -1.7
4,704,861 + +2.0
4,704,894 + -0.8
4,704,894 + -2.1
4,704,894 + -0.6
4,704,894 + +0.7
4,704,895 - +1.3
4,704,895 - -1.5
4,704,895 - -1.2
4,704,934 + -1.4
4,704,935 - -0.7
4,705,214 - PfGW456L13_4194 0.42 -1.6
4,705,465 + PfGW456L13_4194 0.81 -1.6
4,705,466 - PfGW456L13_4194 0.81 -1.3
4,705,466 - PfGW456L13_4194 0.81 -2.4
4,705,466 - PfGW456L13_4194 0.81 +1.8
4,705,754 + +1.0
4,705,754 + +0.0
4,705,759 + -3.0
4,705,760 - +1.4
4,705,760 - +0.7
4,705,760 - -1.6

Or see this region's nucleotide sequence