Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_296 and PfGW456L13_297 are separated by 10 nucleotides PfGW456L13_297 and PfGW456L13_298 are separated by 245 nucleotides PfGW456L13_298 and PfGW456L13_299 are separated by 155 nucleotides PfGW456L13_299 and PfGW456L13_300 overlap by 1 nucleotides
PfGW456L13_296 - Polyhydroxyalkanoate granule-associated protein PhaF, at 348,452 to 349,288
_296
PfGW456L13_297 - polyhydroxyalkanoate granule-associated protein PhaI, at 349,299 to 349,721
_297
PfGW456L13_298 - FIG00954300: hypothetical protein, at 349,967 to 350,242
_298
PfGW456L13_299 - Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-), at 350,398 to 351,168
_299
PfGW456L13_300 - Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes, at 351,168 to 351,791
_300
Position (kb) 349
350
351 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 349.191 kb on + strand at 349.192 kb on - strand, within PfGW456L13_296 at 349.200 kb on - strand, within PfGW456L13_296 at 349.392 kb on - strand, within PfGW456L13_297 at 349.404 kb on - strand, within PfGW456L13_297 at 349.404 kb on - strand, within PfGW456L13_297 at 349.404 kb on - strand, within PfGW456L13_297 at 349.654 kb on + strand, within PfGW456L13_297 at 349.654 kb on + strand, within PfGW456L13_297 at 349.710 kb on - strand at 349.787 kb on - strand at 349.825 kb on + strand at 349.825 kb on + strand at 349.825 kb on + strand at 349.825 kb on + strand at 349.826 kb on - strand at 349.826 kb on - strand at 349.826 kb on - strand at 349.826 kb on - strand at 349.826 kb on - strand at 349.955 kb on + strand at 349.955 kb on + strand at 349.956 kb on - strand at 349.982 kb on - strand at 350.148 kb on + strand, within PfGW456L13_298 at 350.230 kb on + strand at 350.230 kb on + strand at 350.231 kb on - strand at 350.231 kb on - strand at 350.231 kb on - strand at 350.231 kb on - strand at 350.231 kb on - strand at 350.324 kb on + strand at 350.324 kb on + strand at 350.324 kb on + strand at 350.325 kb on - strand at 350.325 kb on - strand at 350.325 kb on - strand at 350.325 kb on - strand at 350.325 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 349,191 + +1.4 349,192 - PfGW456L13_296 0.88 -1.6 349,200 - PfGW456L13_296 0.89 -1.7 349,392 - PfGW456L13_297 0.22 -0.4 349,404 - PfGW456L13_297 0.25 +0.3 349,404 - PfGW456L13_297 0.25 +1.4 349,404 - PfGW456L13_297 0.25 -1.3 349,654 + PfGW456L13_297 0.84 -1.2 349,654 + PfGW456L13_297 0.84 -1.8 349,710 - -1.0 349,787 - +1.1 349,825 + -1.9 349,825 + +0.4 349,825 + +0.8 349,825 + +0.2 349,826 - +1.0 349,826 - -0.8 349,826 - -1.0 349,826 - -1.0 349,826 - -1.5 349,955 + -0.6 349,955 + -2.6 349,956 - +0.6 349,982 - -1.3 350,148 + PfGW456L13_298 0.66 +2.9 350,230 + +3.6 350,230 + +3.0 350,231 - +1.1 350,231 - +3.1 350,231 - -0.2 350,231 - +0.5 350,231 - +1.0 350,324 + -1.6 350,324 + -0.3 350,324 + +1.1 350,325 - +2.9 350,325 - +1.7 350,325 - +0.9 350,325 - +0.4 350,325 - +2.9
Or see this region's nucleotide sequence