Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4619 and Echvi_4620 overlap by 1 nucleotides Echvi_4620 and Echvi_4621 are separated by 6 nucleotides Echvi_4621 and Echvi_4622 are separated by 11 nucleotides Echvi_4622 and Echvi_4623 overlap by 8 nucleotides
Echvi_4619: Echvi_4619 - Glycosyltransferases, probably involved in cell wall biogenesis, at 5,526,932 to 5,527,882
_4619
Echvi_4620: Echvi_4620 - Glycosyltransferases involved in cell wall biogenesis, at 5,527,882 to 5,528,844
_4620
Echvi_4621: Echvi_4621 - hypothetical protein, at 5,528,851 to 5,529,396
_4621
Echvi_4622: Echvi_4622 - hypothetical protein, at 5,529,408 to 5,529,920
_4622
Echvi_4623: Echvi_4623 - Dihydroorotase and related cyclic amidohydrolases, at 5,529,913 to 5,531,157
_4623
Position (kb) 5528
5529
5530 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5527.915 kb on - strand at 5527.915 kb on - strand at 5528.188 kb on - strand, within Echvi_4620 at 5528.814 kb on - strand at 5528.849 kb on + strand at 5528.886 kb on + strand at 5528.920 kb on + strand, within Echvi_4621 at 5528.943 kb on + strand, within Echvi_4621 at 5528.963 kb on + strand, within Echvi_4621 at 5528.964 kb on - strand, within Echvi_4621 at 5528.964 kb on - strand, within Echvi_4621 at 5529.051 kb on + strand, within Echvi_4621 at 5529.076 kb on + strand, within Echvi_4621 at 5529.076 kb on + strand, within Echvi_4621 at 5529.097 kb on + strand, within Echvi_4621 at 5529.098 kb on - strand, within Echvi_4621 at 5529.105 kb on + strand, within Echvi_4621 at 5529.105 kb on + strand, within Echvi_4621 at 5529.105 kb on + strand, within Echvi_4621 at 5529.106 kb on - strand, within Echvi_4621 at 5529.106 kb on - strand, within Echvi_4621 at 5529.106 kb on - strand, within Echvi_4621 at 5529.107 kb on + strand, within Echvi_4621 at 5529.107 kb on + strand, within Echvi_4621 at 5529.107 kb on + strand, within Echvi_4621 at 5529.107 kb on + strand, within Echvi_4621 at 5529.108 kb on - strand, within Echvi_4621 at 5529.156 kb on + strand, within Echvi_4621 at 5529.157 kb on - strand, within Echvi_4621 at 5529.195 kb on - strand, within Echvi_4621 at 5529.220 kb on - strand, within Echvi_4621 at 5529.236 kb on - strand, within Echvi_4621 at 5529.249 kb on - strand, within Echvi_4621 at 5529.249 kb on - strand, within Echvi_4621 at 5529.250 kb on + strand, within Echvi_4621 at 5529.251 kb on - strand, within Echvi_4621 at 5529.254 kb on - strand, within Echvi_4621 at 5529.254 kb on - strand, within Echvi_4621 at 5529.301 kb on + strand, within Echvi_4621 at 5529.301 kb on + strand, within Echvi_4621 at 5529.301 kb on + strand, within Echvi_4621 at 5529.301 kb on + strand, within Echvi_4621 at 5529.309 kb on - strand, within Echvi_4621 at 5529.337 kb on + strand, within Echvi_4621 at 5529.443 kb on + strand at 5529.566 kb on + strand, within Echvi_4622 at 5529.569 kb on + strand, within Echvi_4622 at 5529.570 kb on - strand, within Echvi_4622 at 5529.570 kb on - strand, within Echvi_4622 at 5529.571 kb on + strand, within Echvi_4622 at 5529.571 kb on + strand, within Echvi_4622 at 5529.572 kb on - strand, within Echvi_4622 at 5529.592 kb on + strand, within Echvi_4622 at 5529.592 kb on + strand, within Echvi_4622 at 5529.613 kb on + strand, within Echvi_4622 at 5529.613 kb on + strand, within Echvi_4622 at 5529.614 kb on - strand, within Echvi_4622 at 5529.614 kb on - strand, within Echvi_4622 at 5529.625 kb on - strand, within Echvi_4622 at 5529.692 kb on + strand, within Echvi_4622 at 5529.770 kb on + strand, within Echvi_4622 at 5529.804 kb on + strand, within Echvi_4622 at 5529.805 kb on - strand, within Echvi_4622 at 5529.805 kb on - strand, within Echvi_4622 at 5529.812 kb on + strand, within Echvi_4622 at 5529.835 kb on - strand, within Echvi_4622 at 5529.891 kb on + strand at 5529.906 kb on - strand at 5529.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 5,527,915 - -2.7 5,527,915 - -3.2 5,528,188 - Echvi_4620 0.32 -1.3 5,528,814 - -0.6 5,528,849 + +0.1 5,528,886 + -1.8 5,528,920 + Echvi_4621 0.13 -0.0 5,528,943 + Echvi_4621 0.17 -1.1 5,528,963 + Echvi_4621 0.21 -3.4 5,528,964 - Echvi_4621 0.21 +0.1 5,528,964 - Echvi_4621 0.21 -0.1 5,529,051 + Echvi_4621 0.37 -0.2 5,529,076 + Echvi_4621 0.41 -0.3 5,529,076 + Echvi_4621 0.41 -1.5 5,529,097 + Echvi_4621 0.45 -0.9 5,529,098 - Echvi_4621 0.45 -0.2 5,529,105 + Echvi_4621 0.47 -2.0 5,529,105 + Echvi_4621 0.47 -3.1 5,529,105 + Echvi_4621 0.47 -2.6 5,529,106 - Echvi_4621 0.47 -0.3 5,529,106 - Echvi_4621 0.47 +0.1 5,529,106 - Echvi_4621 0.47 -0.9 5,529,107 + Echvi_4621 0.47 -2.8 5,529,107 + Echvi_4621 0.47 +0.4 5,529,107 + Echvi_4621 0.47 -1.2 5,529,107 + Echvi_4621 0.47 -2.5 5,529,108 - Echvi_4621 0.47 -0.4 5,529,156 + Echvi_4621 0.56 -0.4 5,529,157 - Echvi_4621 0.56 -1.0 5,529,195 - Echvi_4621 0.63 -0.2 5,529,220 - Echvi_4621 0.68 +0.5 5,529,236 - Echvi_4621 0.71 +2.2 5,529,249 - Echvi_4621 0.73 -0.6 5,529,249 - Echvi_4621 0.73 -1.1 5,529,250 + Echvi_4621 0.73 -1.7 5,529,251 - Echvi_4621 0.73 -0.2 5,529,254 - Echvi_4621 0.74 -1.1 5,529,254 - Echvi_4621 0.74 -0.1 5,529,301 + Echvi_4621 0.82 -2.6 5,529,301 + Echvi_4621 0.82 -0.5 5,529,301 + Echvi_4621 0.82 -1.5 5,529,301 + Echvi_4621 0.82 -1.9 5,529,309 - Echvi_4621 0.84 -0.7 5,529,337 + Echvi_4621 0.89 -2.6 5,529,443 + +0.4 5,529,566 + Echvi_4622 0.31 -2.3 5,529,569 + Echvi_4622 0.31 -0.8 5,529,570 - Echvi_4622 0.32 +0.7 5,529,570 - Echvi_4622 0.32 -0.6 5,529,571 + Echvi_4622 0.32 +0.2 5,529,571 + Echvi_4622 0.32 -0.1 5,529,572 - Echvi_4622 0.32 -0.4 5,529,592 + Echvi_4622 0.36 +0.7 5,529,592 + Echvi_4622 0.36 -0.1 5,529,613 + Echvi_4622 0.40 -0.3 5,529,613 + Echvi_4622 0.40 +0.2 5,529,614 - Echvi_4622 0.40 +0.2 5,529,614 - Echvi_4622 0.40 -0.4 5,529,625 - Echvi_4622 0.42 -1.0 5,529,692 + Echvi_4622 0.55 -0.5 5,529,770 + Echvi_4622 0.71 -0.3 5,529,804 + Echvi_4622 0.77 -0.0 5,529,805 - Echvi_4622 0.77 +0.6 5,529,805 - Echvi_4622 0.77 +1.7 5,529,812 + Echvi_4622 0.79 -1.3 5,529,835 - Echvi_4622 0.83 -0.9 5,529,891 + -0.3 5,529,906 - -0.0 5,529,914 + +0.2
Or see this region's nucleotide sequence