Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4399

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4398 and Echvi_4399 overlap by 8 nucleotidesEchvi_4399 and Echvi_4400 are separated by 17 nucleotides Echvi_4398: Echvi_4398 - GDP-mannose 4,6-dehydratase, at 5,257,509 to 5,258,624 _4398 Echvi_4399: Echvi_4399 - hypothetical protein, at 5,258,617 to 5,259,918 _4399 Echvi_4400: Echvi_4400 - nucleotide sugar dehydrogenase, at 5,259,936 to 5,261,255 _4400 Position (kb) 5258 5259 5260Strain fitness (log2 ratio) -2 -1 0 1 2at 5257.636 kb on - strand, within Echvi_4398at 5257.677 kb on + strand, within Echvi_4398at 5257.678 kb on - strand, within Echvi_4398at 5257.678 kb on - strand, within Echvi_4398at 5257.686 kb on - strand, within Echvi_4398at 5257.697 kb on - strand, within Echvi_4398at 5257.751 kb on + strand, within Echvi_4398at 5257.804 kb on - strand, within Echvi_4398at 5257.812 kb on - strand, within Echvi_4398at 5257.812 kb on - strand, within Echvi_4398at 5257.820 kb on - strand, within Echvi_4398at 5257.820 kb on - strand, within Echvi_4398at 5257.824 kb on - strand, within Echvi_4398at 5257.824 kb on - strand, within Echvi_4398at 5257.824 kb on - strand, within Echvi_4398at 5257.861 kb on - strand, within Echvi_4398at 5257.903 kb on - strand, within Echvi_4398at 5257.990 kb on - strand, within Echvi_4398at 5257.990 kb on - strand, within Echvi_4398at 5258.018 kb on + strand, within Echvi_4398at 5258.085 kb on - strand, within Echvi_4398at 5258.085 kb on - strand, within Echvi_4398at 5258.085 kb on - strand, within Echvi_4398at 5258.093 kb on - strand, within Echvi_4398at 5258.093 kb on - strand, within Echvi_4398at 5258.093 kb on - strand, within Echvi_4398at 5258.093 kb on - strand, within Echvi_4398at 5258.097 kb on - strand, within Echvi_4398at 5258.097 kb on - strand, within Echvi_4398at 5258.097 kb on - strand, within Echvi_4398at 5258.097 kb on - strand, within Echvi_4398at 5258.138 kb on - strand, within Echvi_4398at 5258.138 kb on - strand, within Echvi_4398at 5258.138 kb on - strand, within Echvi_4398at 5258.138 kb on - strand, within Echvi_4398at 5258.156 kb on - strand, within Echvi_4398at 5258.156 kb on - strand, within Echvi_4398at 5258.156 kb on - strand, within Echvi_4398at 5258.197 kb on - strand, within Echvi_4398at 5258.197 kb on - strand, within Echvi_4398at 5258.216 kb on - strand, within Echvi_4398at 5258.229 kb on - strand, within Echvi_4398at 5258.241 kb on + strand, within Echvi_4398at 5258.284 kb on - strand, within Echvi_4398at 5258.293 kb on - strand, within Echvi_4398at 5258.293 kb on - strand, within Echvi_4398at 5258.322 kb on - strand, within Echvi_4398at 5258.323 kb on + strand, within Echvi_4398at 5258.373 kb on - strand, within Echvi_4398at 5258.373 kb on - strand, within Echvi_4398at 5258.373 kb on - strand, within Echvi_4398at 5258.373 kb on - strand, within Echvi_4398at 5258.373 kb on - strand, within Echvi_4398at 5258.410 kb on - strand, within Echvi_4398at 5258.423 kb on + strand, within Echvi_4398at 5258.424 kb on - strand, within Echvi_4398at 5258.424 kb on - strand, within Echvi_4398at 5258.433 kb on - strand, within Echvi_4398at 5258.460 kb on - strand, within Echvi_4398at 5258.504 kb on + strand, within Echvi_4398at 5258.576 kb on - strandat 5258.576 kb on - strandat 5258.576 kb on - strandat 5258.604 kb on - strandat 5258.604 kb on - strandat 5258.608 kb on - strandat 5258.625 kb on - strandat 5258.625 kb on - strandat 5258.625 kb on - strandat 5258.627 kb on - strandat 5258.627 kb on - strandat 5258.641 kb on - strandat 5258.677 kb on + strandat 5258.680 kb on + strandat 5258.741 kb on + strandat 5258.741 kb on + strandat 5258.742 kb on - strandat 5258.809 kb on + strand, within Echvi_4399at 5258.818 kb on + strand, within Echvi_4399at 5258.820 kb on + strand, within Echvi_4399at 5258.833 kb on + strand, within Echvi_4399at 5258.872 kb on + strand, within Echvi_4399at 5258.875 kb on + strand, within Echvi_4399at 5259.018 kb on + strand, within Echvi_4399at 5259.018 kb on + strand, within Echvi_4399at 5259.021 kb on - strand, within Echvi_4399at 5259.023 kb on + strand, within Echvi_4399at 5259.038 kb on + strand, within Echvi_4399at 5259.072 kb on + strand, within Echvi_4399at 5259.091 kb on - strand, within Echvi_4399at 5259.310 kb on + strand, within Echvi_4399at 5259.325 kb on + strand, within Echvi_4399at 5259.329 kb on - strand, within Echvi_4399at 5259.329 kb on - strand, within Echvi_4399at 5259.330 kb on + strand, within Echvi_4399at 5259.331 kb on - strand, within Echvi_4399at 5259.336 kb on + strand, within Echvi_4399at 5259.349 kb on + strand, within Echvi_4399at 5259.350 kb on - strand, within Echvi_4399at 5259.357 kb on - strand, within Echvi_4399at 5259.361 kb on + strandat 5259.362 kb on - strand, within Echvi_4399at 5259.362 kb on - strand, within Echvi_4399at 5259.402 kb on + strand, within Echvi_4399at 5259.529 kb on - strand, within Echvi_4399at 5259.594 kb on + strand, within Echvi_4399at 5259.597 kb on + strand, within Echvi_4399at 5259.646 kb on + strand, within Echvi_4399at 5259.793 kb on + strandat 5259.797 kb on + strandat 5259.877 kb on + strandat 5259.888 kb on + strandat 5259.895 kb on + strandat 5259.903 kb on + strandat 5259.903 kb on + strandat 5259.938 kb on - strandat 5259.952 kb on - strandat 5259.980 kb on + strandat 5259.981 kb on - strandat 5259.985 kb on + strandat 5259.985 kb on + strandat 5259.990 kb on + strandat 5259.990 kb on + strandat 5259.990 kb on + strandat 5259.991 kb on - strandat 5260.011 kb on + strandat 5260.013 kb on + strandat 5260.044 kb on - strandat 5260.077 kb on - strand, within Echvi_4400at 5260.080 kb on + strand, within Echvi_4400at 5260.105 kb on - strand, within Echvi_4400at 5260.187 kb on + strand, within Echvi_4400at 5260.187 kb on + strand, within Echvi_4400at 5260.187 kb on + strand, within Echvi_4400at 5260.187 kb on + strand, within Echvi_4400at 5260.188 kb on - strand, within Echvi_4400at 5260.189 kb on + strand, within Echvi_4400at 5260.189 kb on + strand, within Echvi_4400at 5260.189 kb on + strand, within Echvi_4400at 5260.189 kb on + strand, within Echvi_4400at 5260.189 kb on + strand, within Echvi_4400at 5260.190 kb on - strand, within Echvi_4400at 5260.190 kb on - strand, within Echvi_4400at 5260.191 kb on + strand, within Echvi_4400at 5260.191 kb on + strand, within Echvi_4400at 5260.191 kb on + strand, within Echvi_4400at 5260.191 kb on + strand, within Echvi_4400at 5260.191 kb on + strand, within Echvi_4400at 5260.191 kb on + strand, within Echvi_4400at 5260.191 kb on + strand, within Echvi_4400at 5260.192 kb on - strand, within Echvi_4400at 5260.193 kb on + strand, within Echvi_4400at 5260.193 kb on + strand, within Echvi_4400at 5260.193 kb on + strand, within Echvi_4400at 5260.193 kb on + strand, within Echvi_4400at 5260.193 kb on + strand, within Echvi_4400at 5260.193 kb on + strand, within Echvi_4400at 5260.197 kb on + strand, within Echvi_4400at 5260.197 kb on + strand, within Echvi_4400at 5260.197 kb on + strand, within Echvi_4400at 5260.197 kb on + strand, within Echvi_4400at 5260.197 kb on + strand, within Echvi_4400at 5260.197 kb on + strand, within Echvi_4400at 5260.208 kb on + strand, within Echvi_4400at 5260.208 kb on + strand, within Echvi_4400at 5260.217 kb on + strand, within Echvi_4400at 5260.263 kb on - strand, within Echvi_4400at 5260.310 kb on + strand, within Echvi_4400at 5260.311 kb on - strand, within Echvi_4400at 5260.332 kb on - strand, within Echvi_4400at 5260.332 kb on - strand, within Echvi_4400at 5260.332 kb on - strand, within Echvi_4400at 5260.335 kb on - strand, within Echvi_4400at 5260.342 kb on - strand, within Echvi_4400at 5260.362 kb on - strand, within Echvi_4400at 5260.394 kb on + strand, within Echvi_4400at 5260.406 kb on - strand, within Echvi_4400at 5260.406 kb on - strand, within Echvi_4400at 5260.424 kb on + strand, within Echvi_4400at 5260.424 kb on + strand, within Echvi_4400at 5260.425 kb on - strand, within Echvi_4400at 5260.451 kb on + strand, within Echvi_4400at 5260.472 kb on + strand, within Echvi_4400at 5260.476 kb on - strand, within Echvi_4400at 5260.508 kb on + strand, within Echvi_4400at 5260.509 kb on - strand, within Echvi_4400at 5260.509 kb on - strand, within Echvi_4400at 5260.512 kb on + strand, within Echvi_4400at 5260.578 kb on + strand, within Echvi_4400at 5260.579 kb on - strand, within Echvi_4400at 5260.586 kb on + strand, within Echvi_4400at 5260.586 kb on + strand, within Echvi_4400at 5260.587 kb on - strand, within Echvi_4400at 5260.607 kb on + strand, within Echvi_4400at 5260.607 kb on + strand, within Echvi_4400at 5260.608 kb on - strand, within Echvi_4400at 5260.608 kb on - strand, within Echvi_4400at 5260.621 kb on + strand, within Echvi_4400at 5260.621 kb on + strand, within Echvi_4400at 5260.621 kb on + strand, within Echvi_4400at 5260.622 kb on - strand, within Echvi_4400at 5260.622 kb on - strand, within Echvi_4400at 5260.622 kb on - strand, within Echvi_4400at 5260.622 kb on - strand, within Echvi_4400at 5260.625 kb on + strand, within Echvi_4400at 5260.626 kb on - strand, within Echvi_4400at 5260.648 kb on + strand, within Echvi_4400at 5260.659 kb on + strand, within Echvi_4400at 5260.659 kb on + strand, within Echvi_4400at 5260.727 kb on + strand, within Echvi_4400at 5260.728 kb on - strand, within Echvi_4400at 5260.740 kb on - strand, within Echvi_4400at 5260.765 kb on + strand, within Echvi_4400at 5260.778 kb on + strand, within Echvi_4400at 5260.807 kb on - strand, within Echvi_4400at 5260.840 kb on + strand, within Echvi_4400at 5260.847 kb on + strand, within Echvi_4400at 5260.847 kb on + strand, within Echvi_4400at 5260.847 kb on + strand, within Echvi_4400at 5260.848 kb on - strand, within Echvi_4400at 5260.848 kb on - strand, within Echvi_4400at 5260.855 kb on + strand, within Echvi_4400at 5260.878 kb on + strand, within Echvi_4400

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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5,257,636 - Echvi_4398 0.11 +0.1
5,257,677 + Echvi_4398 0.15 +0.1
5,257,678 - Echvi_4398 0.15 +0.5
5,257,678 - Echvi_4398 0.15 +0.2
5,257,686 - Echvi_4398 0.16 -1.5
5,257,697 - Echvi_4398 0.17 +0.1
5,257,751 + Echvi_4398 0.22 -1.3
5,257,804 - Echvi_4398 0.26 -0.8
5,257,812 - Echvi_4398 0.27 +0.2
5,257,812 - Echvi_4398 0.27 -0.1
5,257,820 - Echvi_4398 0.28 -1.1
5,257,820 - Echvi_4398 0.28 +0.3
5,257,824 - Echvi_4398 0.28 +1.7
5,257,824 - Echvi_4398 0.28 +0.9
5,257,824 - Echvi_4398 0.28 +0.2
5,257,861 - Echvi_4398 0.32 +0.6
5,257,903 - Echvi_4398 0.35 +0.8
5,257,990 - Echvi_4398 0.43 -0.9
5,257,990 - Echvi_4398 0.43 +0.3
5,258,018 + Echvi_4398 0.46 +0.5
5,258,085 - Echvi_4398 0.52 +0.9
5,258,085 - Echvi_4398 0.52 +0.4
5,258,085 - Echvi_4398 0.52 -0.3
5,258,093 - Echvi_4398 0.52 +0.4
5,258,093 - Echvi_4398 0.52 +0.3
5,258,093 - Echvi_4398 0.52 +0.6
5,258,093 - Echvi_4398 0.52 -0.1
5,258,097 - Echvi_4398 0.53 -0.7
5,258,097 - Echvi_4398 0.53 +0.9
5,258,097 - Echvi_4398 0.53 +0.1
5,258,097 - Echvi_4398 0.53 +1.0
5,258,138 - Echvi_4398 0.56 -0.1
5,258,138 - Echvi_4398 0.56 -0.1
5,258,138 - Echvi_4398 0.56 +0.3
5,258,138 - Echvi_4398 0.56 +0.9
5,258,156 - Echvi_4398 0.58 -1.0
5,258,156 - Echvi_4398 0.58 +0.7
5,258,156 - Echvi_4398 0.58 +0.2
5,258,197 - Echvi_4398 0.62 -0.4
5,258,197 - Echvi_4398 0.62 -1.2
5,258,216 - Echvi_4398 0.63 +1.9
5,258,229 - Echvi_4398 0.65 -0.5
5,258,241 + Echvi_4398 0.66 -0.3
5,258,284 - Echvi_4398 0.69 -0.4
5,258,293 - Echvi_4398 0.70 +0.9
5,258,293 - Echvi_4398 0.70 +0.3
5,258,322 - Echvi_4398 0.73 +0.5
5,258,323 + Echvi_4398 0.73 -0.3
5,258,373 - Echvi_4398 0.77 -0.0
5,258,373 - Echvi_4398 0.77 +2.0
5,258,373 - Echvi_4398 0.77 -0.7
5,258,373 - Echvi_4398 0.77 +1.0
5,258,373 - Echvi_4398 0.77 +0.5
5,258,410 - Echvi_4398 0.81 +0.3
5,258,423 + Echvi_4398 0.82 -0.3
5,258,424 - Echvi_4398 0.82 -0.3
5,258,424 - Echvi_4398 0.82 -1.3
5,258,433 - Echvi_4398 0.83 -0.7
5,258,460 - Echvi_4398 0.85 +0.2
5,258,504 + Echvi_4398 0.89 -0.3
5,258,576 - +0.2
5,258,576 - -0.2
5,258,576 - -0.2
5,258,604 - -0.7
5,258,604 - +0.6
5,258,608 - +1.0
5,258,625 - -0.0
5,258,625 - -0.6
5,258,625 - -0.0
5,258,627 - +0.4
5,258,627 - -1.0
5,258,641 - +0.1
5,258,677 + -1.6
5,258,680 + -1.3
5,258,741 + -1.0
5,258,741 + -1.4
5,258,742 - -0.3
5,258,809 + Echvi_4399 0.15 -0.8
5,258,818 + Echvi_4399 0.15 +0.3
5,258,820 + Echvi_4399 0.16 -1.4
5,258,833 + Echvi_4399 0.17 -1.7
5,258,872 + Echvi_4399 0.20 +0.7
5,258,875 + Echvi_4399 0.20 -1.1
5,259,018 + Echvi_4399 0.31 -0.9
5,259,018 + Echvi_4399 0.31 -1.9
5,259,021 - Echvi_4399 0.31 -1.1
5,259,023 + Echvi_4399 0.31 -2.0
5,259,038 + Echvi_4399 0.32 -0.5
5,259,072 + Echvi_4399 0.35 -1.6
5,259,091 - Echvi_4399 0.36 -2.1
5,259,310 + Echvi_4399 0.53 +0.3
5,259,325 + Echvi_4399 0.54 -1.3
5,259,329 - Echvi_4399 0.55 -0.5
5,259,329 - Echvi_4399 0.55 -0.7
5,259,330 + Echvi_4399 0.55 +0.4
5,259,331 - Echvi_4399 0.55 -0.3
5,259,336 + Echvi_4399 0.55 +1.3
5,259,349 + Echvi_4399 0.56 -0.3
5,259,350 - Echvi_4399 0.56 +2.3
5,259,357 - Echvi_4399 0.57 +1.7
5,259,361 + +1.7
5,259,362 - Echvi_4399 0.57 -1.2
5,259,362 - Echvi_4399 0.57 +0.0
5,259,402 + Echvi_4399 0.60 -1.9
5,259,529 - Echvi_4399 0.70 -1.8
5,259,594 + Echvi_4399 0.75 -1.7
5,259,597 + Echvi_4399 0.75 -0.2
5,259,646 + Echvi_4399 0.79 -1.8
5,259,793 + +0.5
5,259,797 + -0.4
5,259,877 + -0.4
5,259,888 + -0.7
5,259,895 + -1.1
5,259,903 + -2.7
5,259,903 + -1.0
5,259,938 - +1.7
5,259,952 - -1.1
5,259,980 + +0.3
5,259,981 - -0.5
5,259,985 + -0.1
5,259,985 + -0.9
5,259,990 + -0.2
5,259,990 + -1.1
5,259,990 + -0.1
5,259,991 - +0.4
5,260,011 + +1.7
5,260,013 + +0.4
5,260,044 - -0.5
5,260,077 - Echvi_4400 0.11 +0.4
5,260,080 + Echvi_4400 0.11 -0.2
5,260,105 - Echvi_4400 0.13 -0.3
5,260,187 + Echvi_4400 0.19 -0.3
5,260,187 + Echvi_4400 0.19 -0.4
5,260,187 + Echvi_4400 0.19 -0.3
5,260,187 + Echvi_4400 0.19 -0.1
5,260,188 - Echvi_4400 0.19 -0.0
5,260,189 + Echvi_4400 0.19 +0.2
5,260,189 + Echvi_4400 0.19 +0.2
5,260,189 + Echvi_4400 0.19 -0.9
5,260,189 + Echvi_4400 0.19 -1.7
5,260,189 + Echvi_4400 0.19 -0.1
5,260,190 - Echvi_4400 0.19 +2.2
5,260,190 - Echvi_4400 0.19 -0.2
5,260,191 + Echvi_4400 0.19 -0.8
5,260,191 + Echvi_4400 0.19 -0.3
5,260,191 + Echvi_4400 0.19 +0.4
5,260,191 + Echvi_4400 0.19 -0.0
5,260,191 + Echvi_4400 0.19 +1.2
5,260,191 + Echvi_4400 0.19 +0.5
5,260,191 + Echvi_4400 0.19 -0.3
5,260,192 - Echvi_4400 0.19 -0.5
5,260,193 + Echvi_4400 0.19 +0.6
5,260,193 + Echvi_4400 0.19 +0.2
5,260,193 + Echvi_4400 0.19 +0.3
5,260,193 + Echvi_4400 0.19 -0.5
5,260,193 + Echvi_4400 0.19 -0.9
5,260,193 + Echvi_4400 0.19 -0.7
5,260,197 + Echvi_4400 0.20 +0.5
5,260,197 + Echvi_4400 0.20 +0.2
5,260,197 + Echvi_4400 0.20 +2.1
5,260,197 + Echvi_4400 0.20 -0.1
5,260,197 + Echvi_4400 0.20 +0.5
5,260,197 + Echvi_4400 0.20 -0.1
5,260,208 + Echvi_4400 0.21 +0.3
5,260,208 + Echvi_4400 0.21 -0.1
5,260,217 + Echvi_4400 0.21 -0.6
5,260,263 - Echvi_4400 0.25 +0.7
5,260,310 + Echvi_4400 0.28 -0.7
5,260,311 - Echvi_4400 0.28 +2.7
5,260,332 - Echvi_4400 0.30 +1.0
5,260,332 - Echvi_4400 0.30 +1.9
5,260,332 - Echvi_4400 0.30 +2.1
5,260,335 - Echvi_4400 0.30 +0.1
5,260,342 - Echvi_4400 0.31 +0.7
5,260,362 - Echvi_4400 0.32 -1.1
5,260,394 + Echvi_4400 0.35 -2.0
5,260,406 - Echvi_4400 0.36 -0.2
5,260,406 - Echvi_4400 0.36 +0.8
5,260,424 + Echvi_4400 0.37 +1.0
5,260,424 + Echvi_4400 0.37 -0.4
5,260,425 - Echvi_4400 0.37 +0.3
5,260,451 + Echvi_4400 0.39 -0.3
5,260,472 + Echvi_4400 0.41 +1.7
5,260,476 - Echvi_4400 0.41 +0.4
5,260,508 + Echvi_4400 0.43 +1.3
5,260,509 - Echvi_4400 0.43 -1.2
5,260,509 - Echvi_4400 0.43 -0.5
5,260,512 + Echvi_4400 0.44 -0.7
5,260,578 + Echvi_4400 0.49 -0.4
5,260,579 - Echvi_4400 0.49 +0.3
5,260,586 + Echvi_4400 0.49 -1.0
5,260,586 + Echvi_4400 0.49 +0.2
5,260,587 - Echvi_4400 0.49 +0.1
5,260,607 + Echvi_4400 0.51 +0.1
5,260,607 + Echvi_4400 0.51 -1.0
5,260,608 - Echvi_4400 0.51 +0.3
5,260,608 - Echvi_4400 0.51 +0.5
5,260,621 + Echvi_4400 0.52 +1.0
5,260,621 + Echvi_4400 0.52 -0.9
5,260,621 + Echvi_4400 0.52 -1.7
5,260,622 - Echvi_4400 0.52 -0.8
5,260,622 - Echvi_4400 0.52 -0.3
5,260,622 - Echvi_4400 0.52 +1.5
5,260,622 - Echvi_4400 0.52 +0.2
5,260,625 + Echvi_4400 0.52 +0.5
5,260,626 - Echvi_4400 0.52 +1.3
5,260,648 + Echvi_4400 0.54 +0.5
5,260,659 + Echvi_4400 0.55 +0.3
5,260,659 + Echvi_4400 0.55 -2.7
5,260,727 + Echvi_4400 0.60 +0.3
5,260,728 - Echvi_4400 0.60 -1.3
5,260,740 - Echvi_4400 0.61 -0.6
5,260,765 + Echvi_4400 0.63 -0.7
5,260,778 + Echvi_4400 0.64 -1.6
5,260,807 - Echvi_4400 0.66 -0.2
5,260,840 + Echvi_4400 0.68 +0.7
5,260,847 + Echvi_4400 0.69 +0.4
5,260,847 + Echvi_4400 0.69 +0.4
5,260,847 + Echvi_4400 0.69 +0.7
5,260,848 - Echvi_4400 0.69 -0.7
5,260,848 - Echvi_4400 0.69 -0.3
5,260,855 + Echvi_4400 0.70 +1.7
5,260,878 + Echvi_4400 0.71 +1.5

Or see this region's nucleotide sequence