Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4359 and Echvi_4360 overlap by 4 nucleotides Echvi_4360 and Echvi_4361 are separated by 8 nucleotides Echvi_4361 and Echvi_4362 overlap by 14 nucleotides Echvi_4362 and Echvi_4363 overlap by 4 nucleotides
Echvi_4359: Echvi_4359 - Bacteroides conjugative transposon TraJ protein, at 5,215,699 to 5,216,739
_4359
Echvi_4360: Echvi_4360 - hypothetical protein, at 5,216,736 to 5,217,353
_4360
Echvi_4361: Echvi_4361 - hypothetical protein, at 5,217,362 to 5,218,009
_4361
Echvi_4362: Echvi_4362 - hypothetical protein, at 5,217,996 to 5,218,694
_4362
Echvi_4363: Echvi_4363 - Bacteroides conjugation system ATPase, TraG family, at 5,218,691 to 5,221,159
_4363
Position (kb) 5217
5218
5219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5216.389 kb on + strand, within Echvi_4359 at 5216.389 kb on + strand, within Echvi_4359 at 5216.556 kb on - strand, within Echvi_4359 at 5216.674 kb on + strand at 5216.832 kb on + strand, within Echvi_4360 at 5216.833 kb on - strand, within Echvi_4360 at 5216.986 kb on + strand, within Echvi_4360 at 5217.057 kb on + strand, within Echvi_4360 at 5217.057 kb on + strand, within Echvi_4360 at 5217.057 kb on + strand, within Echvi_4360 at 5217.057 kb on + strand, within Echvi_4360 at 5217.071 kb on - strand, within Echvi_4360 at 5217.071 kb on - strand, within Echvi_4360 at 5217.092 kb on + strand, within Echvi_4360 at 5217.093 kb on - strand, within Echvi_4360 at 5217.221 kb on - strand, within Echvi_4360 at 5217.340 kb on - strand at 5217.341 kb on + strand at 5217.342 kb on + strand at 5217.353 kb on + strand at 5217.354 kb on - strand at 5217.449 kb on - strand, within Echvi_4361 at 5217.485 kb on + strand, within Echvi_4361 at 5217.495 kb on + strand, within Echvi_4361 at 5217.495 kb on + strand, within Echvi_4361 at 5217.496 kb on - strand, within Echvi_4361 at 5217.496 kb on - strand, within Echvi_4361 at 5217.611 kb on + strand, within Echvi_4361 at 5217.850 kb on - strand, within Echvi_4361 at 5217.873 kb on + strand, within Echvi_4361 at 5217.874 kb on - strand at 5217.874 kb on - strand, within Echvi_4361 at 5217.874 kb on - strand, within Echvi_4361 at 5217.874 kb on - strand, within Echvi_4361 at 5217.989 kb on + strand at 5218.023 kb on + strand at 5218.197 kb on + strand, within Echvi_4362 at 5218.408 kb on + strand, within Echvi_4362 at 5218.597 kb on + strand, within Echvi_4362 at 5218.598 kb on - strand, within Echvi_4362 at 5218.598 kb on - strand, within Echvi_4362 at 5218.598 kb on - strand, within Echvi_4362 at 5218.598 kb on - strand, within Echvi_4362 at 5218.781 kb on + strand at 5218.782 kb on - strand at 5218.804 kb on + strand at 5218.806 kb on + strand at 5218.842 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 5,216,389 + Echvi_4359 0.66 -1.4 5,216,389 + Echvi_4359 0.66 +2.1 5,216,556 - Echvi_4359 0.82 -1.8 5,216,674 + -1.4 5,216,832 + Echvi_4360 0.16 -0.7 5,216,833 - Echvi_4360 0.16 -2.8 5,216,986 + Echvi_4360 0.40 +0.1 5,217,057 + Echvi_4360 0.52 +2.1 5,217,057 + Echvi_4360 0.52 -1.0 5,217,057 + Echvi_4360 0.52 -0.2 5,217,057 + Echvi_4360 0.52 +0.3 5,217,071 - Echvi_4360 0.54 +1.9 5,217,071 - Echvi_4360 0.54 +0.2 5,217,092 + Echvi_4360 0.58 -0.7 5,217,093 - Echvi_4360 0.58 +1.3 5,217,221 - Echvi_4360 0.78 -0.2 5,217,340 - +0.1 5,217,341 + -0.1 5,217,342 + +0.6 5,217,353 + -0.3 5,217,354 - -0.2 5,217,449 - Echvi_4361 0.13 -0.1 5,217,485 + Echvi_4361 0.19 +0.2 5,217,495 + Echvi_4361 0.21 -1.3 5,217,495 + Echvi_4361 0.21 +1.4 5,217,496 - Echvi_4361 0.21 -1.4 5,217,496 - Echvi_4361 0.21 -1.7 5,217,611 + Echvi_4361 0.38 -0.5 5,217,850 - Echvi_4361 0.75 +0.2 5,217,873 + Echvi_4361 0.79 +1.3 5,217,874 - +0.6 5,217,874 - Echvi_4361 0.79 -0.7 5,217,874 - Echvi_4361 0.79 -1.9 5,217,874 - Echvi_4361 0.79 -0.6 5,217,989 + -0.7 5,218,023 + +0.7 5,218,197 + Echvi_4362 0.29 -1.7 5,218,408 + Echvi_4362 0.59 +0.8 5,218,597 + Echvi_4362 0.86 -1.0 5,218,598 - Echvi_4362 0.86 -0.2 5,218,598 - Echvi_4362 0.86 +0.6 5,218,598 - Echvi_4362 0.86 +0.2 5,218,598 - Echvi_4362 0.86 +0.4 5,218,781 + +0.7 5,218,782 - -0.4 5,218,804 + +0.8 5,218,806 + -0.7 5,218,842 + -1.4
Or see this region's nucleotide sequence