Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4047 and Echvi_4048 are separated by 83 nucleotides Echvi_4048 and Echvi_4049 are separated by 33 nucleotides Echvi_4049 and Echvi_4050 are separated by 65 nucleotides Echvi_4050 and Echvi_4051 are separated by 94 nucleotides
Echvi_4047: Echvi_4047 - hypothetical protein, at 4,853,073 to 4,853,267
_4047
Echvi_4048: Echvi_4048 - hypothetical protein, at 4,853,351 to 4,853,527
_4048
Echvi_4049: Echvi_4049 - Uncharacterized protein conserved in bacteria, at 4,853,561 to 4,854,013
_4049
Echvi_4050: Echvi_4050 - hypothetical protein, at 4,854,079 to 4,856,952
_4050
Echvi_4051: Echvi_4051 - ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains), at 4,857,047 to 4,860,313
_4051
Position (kb) 4854
4855
4856
4857 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4853.140 kb on - strand, within Echvi_4047 at 4853.169 kb on - strand, within Echvi_4047 at 4853.193 kb on + strand, within Echvi_4047 at 4853.194 kb on - strand, within Echvi_4047 at 4853.212 kb on + strand, within Echvi_4047 at 4853.295 kb on + strand at 4853.295 kb on + strand at 4853.318 kb on + strand at 4853.318 kb on + strand at 4853.384 kb on - strand, within Echvi_4048 at 4853.578 kb on + strand at 4853.593 kb on + strand at 4853.684 kb on + strand, within Echvi_4049 at 4853.685 kb on - strand, within Echvi_4049 at 4853.702 kb on - strand, within Echvi_4049 at 4853.726 kb on + strand, within Echvi_4049 at 4853.774 kb on - strand, within Echvi_4049 at 4853.774 kb on - strand, within Echvi_4049 at 4853.774 kb on - strand, within Echvi_4049 at 4853.794 kb on + strand, within Echvi_4049 at 4853.795 kb on - strand, within Echvi_4049 at 4853.805 kb on + strand, within Echvi_4049 at 4853.871 kb on + strand, within Echvi_4049 at 4853.949 kb on - strand at 4854.003 kb on + strand at 4854.011 kb on + strand at 4854.011 kb on + strand at 4854.011 kb on + strand at 4854.011 kb on + strand at 4854.011 kb on + strand at 4854.012 kb on - strand at 4854.014 kb on + strand at 4854.014 kb on + strand at 4854.014 kb on + strand at 4854.014 kb on + strand at 4854.091 kb on + strand at 4854.463 kb on - strand, within Echvi_4050 at 4855.238 kb on + strand, within Echvi_4050 at 4855.245 kb on - strand, within Echvi_4050 at 4855.245 kb on - strand, within Echvi_4050 at 4856.871 kb on + strand at 4856.964 kb on - strand at 4856.968 kb on - strand at 4856.982 kb on - strand at 4856.990 kb on - strand at 4857.010 kb on - strand at 4857.063 kb on + strand at 4857.063 kb on + strand at 4857.086 kb on + strand at 4857.168 kb on + strand at 4857.168 kb on + strand at 4857.189 kb on + strand at 4857.224 kb on + strand at 4857.471 kb on - strand, within Echvi_4051 at 4857.503 kb on - strand, within Echvi_4051
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 4,853,140 - Echvi_4047 0.34 +1.8 4,853,169 - Echvi_4047 0.49 +2.4 4,853,193 + Echvi_4047 0.62 +0.1 4,853,194 - Echvi_4047 0.62 +1.2 4,853,212 + Echvi_4047 0.71 -1.6 4,853,295 + -0.4 4,853,295 + -0.8 4,853,318 + -1.9 4,853,318 + +1.6 4,853,384 - Echvi_4048 0.19 +0.0 4,853,578 + +0.0 4,853,593 + +0.3 4,853,684 + Echvi_4049 0.27 -2.2 4,853,685 - Echvi_4049 0.27 +0.4 4,853,702 - Echvi_4049 0.31 +0.7 4,853,726 + Echvi_4049 0.36 +0.5 4,853,774 - Echvi_4049 0.47 +0.3 4,853,774 - Echvi_4049 0.47 +0.2 4,853,774 - Echvi_4049 0.47 -0.0 4,853,794 + Echvi_4049 0.51 -2.4 4,853,795 - Echvi_4049 0.52 -1.1 4,853,805 + Echvi_4049 0.54 +1.6 4,853,871 + Echvi_4049 0.68 +1.1 4,853,949 - +1.6 4,854,003 + -1.1 4,854,011 + -1.0 4,854,011 + +1.2 4,854,011 + -1.1 4,854,011 + +0.0 4,854,011 + -0.3 4,854,012 - +0.2 4,854,014 + +0.2 4,854,014 + +0.1 4,854,014 + -0.0 4,854,014 + -0.2 4,854,091 + -2.7 4,854,463 - Echvi_4050 0.13 -0.4 4,855,238 + Echvi_4050 0.40 +0.0 4,855,245 - Echvi_4050 0.41 -1.0 4,855,245 - Echvi_4050 0.41 -1.2 4,856,871 + -0.7 4,856,964 - -0.3 4,856,968 - -0.6 4,856,982 - -0.6 4,856,990 - +1.6 4,857,010 - -0.8 4,857,063 + -0.4 4,857,063 + +0.3 4,857,086 + -0.0 4,857,168 + +0.7 4,857,168 + -2.1 4,857,189 + -1.8 4,857,224 + -2.4 4,857,471 - Echvi_4051 0.13 +0.0 4,857,503 - Echvi_4051 0.14 +0.1
Or see this region's nucleotide sequence