Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2841

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
3,400,687	+		Echvi_2840	0.45	-1.4
3,400,713	+		Echvi_2840	0.47	+0.8
3,400,713	+		Echvi_2840	0.47	-0.3
3,400,713	+		Echvi_2840	0.47	-0.2
3,400,714	-		Echvi_2840	0.47	-1.8
3,400,714	-		Echvi_2840	0.47	-2.9
3,400,714	-		Echvi_2840	0.47	+0.2
3,400,714	-		Echvi_2840	0.47	-1.3
3,400,719	+		Echvi_2840	0.47	-0.5
3,400,719	+		Echvi_2840	0.47	+0.5
3,400,720	-		Echvi_2840	0.47	+0.2
3,400,720	-		Echvi_2840	0.47	-0.7
3,400,729	-		Echvi_2840	0.48	+0.8
3,400,821	-		Echvi_2840	0.53	+0.3
3,400,858	+		Echvi_2840	0.55	-0.3
3,401,256	+		Echvi_2840	0.78	+0.4
3,401,262	+		Echvi_2840	0.78	-1.2
3,401,288	+		Echvi_2840	0.79	-0.8
3,401,288	+		Echvi_2840	0.79	+0.4
3,401,288	+		Echvi_2840	0.79	-0.7
3,401,309	-		Echvi_2840	0.81	-0.3
3,401,309	-		Echvi_2840	0.81	+2.6
3,401,336	-		Echvi_2840	0.82	-1.0
3,401,429	-		Echvi_2840	0.87	-0.8
3,401,457	+		Echvi_2840	0.89	+2.6
3,401,461	+		Echvi_2840	0.89	-0.4
3,401,461	+		Echvi_2840	0.89	+0.6
3,401,462	-		Echvi_2840	0.89	+2.6
3,401,462	-		Echvi_2840	0.89	+0.9
3,401,462	-		Echvi_2840	0.89	+0.9
3,401,467	-		Echvi_2840	0.89	+0.1
3,401,516	-				-1.4
3,401,615	-				-0.5
3,401,615	-				-1.2
3,401,657	+				+1.3
3,401,657	+				+1.0
3,401,657	+				+0.8
3,401,657	+				+0.5
3,401,658	-				+0.5
3,401,721	+				-4.3
3,401,722	-				-2.8
3,401,772	+				-3.2
3,401,773	-				-3.2
3,401,773	-				-3.3
3,401,773	-				-4.9
3,401,790	+				-0.5
3,401,790	+				-1.6
3,401,792	+				-3.7
3,401,792	+				-3.4
3,401,792	+				-3.5
3,401,792	+				-1.7
3,401,792	+				-3.1
3,401,792	+				-2.1
3,401,793	-				-2.9
3,401,793	-				-4.0
3,401,793	-				-1.5
3,401,793	-				-2.4
3,401,793	-				-0.5
3,401,794	+				-0.6
3,401,794	+				-3.3
3,401,794	+				-3.4
3,401,794	+				-3.0
3,401,794	+				-3.2
3,401,794	+				-2.5
3,401,794	+				-2.6
3,401,794	+				-1.3
3,401,795	-				-2.0
3,401,795	-				-3.4
3,401,795	-				-0.3
3,401,795	-				-2.2
3,401,795	-				-2.9
3,401,795	-				-2.4
3,401,795	-				-4.0
3,401,795	-				-2.0
3,401,795	-				-2.5
3,401,796	+				-2.8
3,401,796	+				-1.3
3,401,796	+				-3.0
3,401,796	+				-0.0
3,401,796	+				-1.9
3,401,797	-				-1.5
3,401,797	-				-3.0
3,401,797	-				-2.3
3,401,797	-				-1.6
3,401,802	-				-3.1
3,401,802	-				-2.9
3,401,871	+		Echvi_2841	0.14	-1.7
3,401,871	+		Echvi_2841	0.14	-2.1
3,401,872	-		Echvi_2841	0.14	-3.2
3,401,872	-		Echvi_2841	0.14	-2.6
3,402,005	+		Echvi_2841	0.24	-3.3
3,402,083	+		Echvi_2841	0.29	-2.5
3,402,113	+		Echvi_2841	0.32	-2.8
3,402,113	+		Echvi_2841	0.32	-2.5
3,402,113	+		Echvi_2841	0.32	-2.4
3,402,114	-		Echvi_2841	0.32	+0.5
3,402,114	-		Echvi_2841	0.32	-1.2
3,402,116	+		Echvi_2841	0.32	-3.3
3,402,116	+		Echvi_2841	0.32	-3.0
3,402,117	-		Echvi_2841	0.32	-2.0
3,402,121	+		Echvi_2841	0.32	-3.8
3,402,123	+		Echvi_2841	0.32	-1.4
3,402,123	+		Echvi_2841	0.32	-0.0
3,402,124	-		Echvi_2841	0.32	-4.5
3,402,124	-		Echvi_2841	0.32	-1.8
3,402,124	-		Echvi_2841	0.32	-3.0
3,402,144	-		Echvi_2841	0.34	-2.2
3,402,163	+		Echvi_2841	0.35	-2.8
3,402,361	+		Echvi_2841	0.50	-2.4
3,402,393	+		Echvi_2841	0.52	-1.8
3,402,394	-		Echvi_2841	0.52	-3.6
3,402,455	-		Echvi_2841	0.57	-3.2
3,402,658	+		Echvi_2841	0.72	-2.6
3,402,658	+		Echvi_2841	0.72	-3.9
3,402,659	-		Echvi_2841	0.72	-2.3
3,402,744	-		Echvi_2841	0.78	-2.4
3,402,747	-		Echvi_2841	0.78	-1.6
3,402,828	+		Echvi_2841	0.84	-0.0
3,402,866	-		Echvi_2841	0.87	-2.6
3,402,972	-				-5.1
3,402,972	-				-3.6
3,402,972	-				-2.3
3,402,972	-				-3.2
3,403,048	+				-2.4
3,403,049	-				-0.8
3,403,096	+				-1.7
3,403,106	+				-2.2
3,403,106	+				-2.3
3,403,106	+				-2.9
3,403,107	-				-0.0
3,403,153	-				-0.6
3,403,274	-				+1.9
3,403,274	-				-0.8
3,403,307	+				-1.0
3,403,307	+				-0.5
3,403,315	+				+0.5
3,403,315	+				-1.1
3,403,316	-				+0.5
3,403,324	-				-0.1
3,403,324	-				-0.5
3,403,348	+		Echvi_2842	0.10	-1.7
3,403,349	-		Echvi_2842	0.10	+0.2
3,403,349	-		Echvi_2842	0.10	-0.5
3,403,389	+		Echvi_2842	0.12	+0.5
3,403,401	+		Echvi_2842	0.12	+1.0
3,403,401	+		Echvi_2842	0.12	-0.7
3,403,401	+		Echvi_2842	0.12	+0.9
3,403,426	+		Echvi_2842	0.13	+0.5
3,403,431	+		Echvi_2842	0.13	-0.5
3,403,431	+		Echvi_2842	0.13	-0.4
3,403,458	-		Echvi_2842	0.15	-0.5
3,403,458	-		Echvi_2842	0.15	-1.3
3,403,458	-		Echvi_2842	0.15	-0.7
3,403,541	-		Echvi_2842	0.18	+0.6
3,403,552	-		Echvi_2842	0.18	+2.0
3,403,602	-		Echvi_2842	0.20	-0.9
3,403,602	-		Echvi_2842	0.20	-0.5
3,403,622	+		Echvi_2842	0.21	-0.6
3,403,622	+		Echvi_2842	0.21	-0.5
3,403,623	-		Echvi_2842	0.21	+0.1
3,403,638	-		Echvi_2842	0.22	-0.5
3,403,638	-		Echvi_2842	0.22	+0.2
3,403,638	-		Echvi_2842	0.22	+1.0
3,403,638	-		Echvi_2842	0.22	+0.1
3,403,639	+		Echvi_2842	0.22	-0.3
3,403,640	-		Echvi_2842	0.22	-0.8
3,403,640	-		Echvi_2842	0.22	-0.3
3,403,640	-		Echvi_2842	0.22	-0.5
3,403,640	-		Echvi_2842	0.22	-0.6
3,403,640	-		Echvi_2842	0.22	+1.1
3,403,643	+		Echvi_2842	0.22	-0.1
3,403,644	-		Echvi_2842	0.22	-1.2
3,403,646	+		Echvi_2842	0.22	-1.3
3,403,647	-		Echvi_2842	0.22	-0.0
3,403,667	+		Echvi_2842	0.23	-0.3
3,403,728	+		Echvi_2842	0.26	-0.9
3,403,729	-		Echvi_2842	0.26	-0.8
3,403,729	-		Echvi_2842	0.26	-0.7
3,403,857	+		Echvi_2842	0.31	-0.4
3,403,858	-		Echvi_2842	0.31	+1.0
3,403,858	-		Echvi_2842	0.31	+0.3
3,404,005	-		Echvi_2842	0.37	-0.9
3,404,036	+		Echvi_2842	0.38	-0.9