Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1362 and Echvi_1363 overlap by 4 nucleotides Echvi_1363 and Echvi_1364 overlap by 4 nucleotides Echvi_1364 and Echvi_1365 are separated by 11 nucleotides Echvi_1365 and Echvi_1366 are separated by 10 nucleotides Echvi_1366 and Echvi_1367 are separated by 94 nucleotides
Echvi_1362: Echvi_1362 - Bacteroides conjugation system ATPase, TraG family, at 1,567,398 to 1,569,860
_1362
Echvi_1363: Echvi_1363 - hypothetical protein, at 1,569,857 to 1,570,177
_1363
Echvi_1364: Echvi_1364 - hypothetical protein, at 1,570,174 to 1,570,626
_1364
Echvi_1365: Echvi_1365 - hypothetical protein, at 1,570,638 to 1,570,943
_1365
Echvi_1366: Echvi_1366 - hypothetical protein, at 1,570,954 to 1,571,367
_1366
Echvi_1367: Echvi_1367 - RteC protein., at 1,571,462 to 1,572,307
_1367
Position (kb) 1570
1571 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1569.862 kb on + strand at 1569.862 kb on + strand at 1569.863 kb on - strand at 1569.987 kb on + strand, within Echvi_1363 at 1570.032 kb on + strand, within Echvi_1363 at 1570.053 kb on + strand, within Echvi_1363 at 1570.109 kb on - strand, within Echvi_1363 at 1570.110 kb on + strand, within Echvi_1363 at 1570.111 kb on - strand, within Echvi_1363 at 1570.177 kb on + strand at 1570.310 kb on + strand, within Echvi_1364 at 1570.424 kb on + strand, within Echvi_1364 at 1570.424 kb on + strand, within Echvi_1364 at 1570.562 kb on + strand, within Echvi_1364 at 1570.562 kb on + strand, within Echvi_1364 at 1570.641 kb on + strand at 1570.641 kb on + strand at 1570.641 kb on + strand at 1570.687 kb on - strand, within Echvi_1365 at 1570.798 kb on + strand, within Echvi_1365 at 1570.798 kb on + strand, within Echvi_1365 at 1570.798 kb on + strand, within Echvi_1365 at 1570.896 kb on + strand, within Echvi_1365 at 1570.946 kb on + strand at 1571.028 kb on + strand, within Echvi_1366 at 1571.073 kb on + strand, within Echvi_1366 at 1571.217 kb on + strand, within Echvi_1366 at 1571.217 kb on + strand, within Echvi_1366 at 1571.217 kb on + strand, within Echvi_1366 at 1571.282 kb on + strand, within Echvi_1366 at 1571.297 kb on + strand, within Echvi_1366 at 1571.297 kb on + strand, within Echvi_1366 at 1571.297 kb on + strand, within Echvi_1366 at 1571.303 kb on + strand, within Echvi_1366 at 1571.303 kb on + strand, within Echvi_1366 at 1571.303 kb on + strand, within Echvi_1366 at 1571.306 kb on + strand, within Echvi_1366 at 1571.538 kb on - strand at 1571.589 kb on + strand, within Echvi_1367 at 1571.592 kb on + strand, within Echvi_1367 at 1571.592 kb on + strand, within Echvi_1367 at 1571.602 kb on + strand, within Echvi_1367 at 1571.603 kb on - strand, within Echvi_1367 at 1571.670 kb on - strand, within Echvi_1367 at 1571.691 kb on + strand, within Echvi_1367 at 1571.692 kb on - strand, within Echvi_1367 at 1571.695 kb on + strand, within Echvi_1367 at 1571.696 kb on - strand, within Echvi_1367 at 1571.769 kb on - strand, within Echvi_1367 at 1571.925 kb on + strand, within Echvi_1367
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 1,569,862 + -0.3 1,569,862 + -1.6 1,569,863 - -0.1 1,569,987 + Echvi_1363 0.40 +1.2 1,570,032 + Echvi_1363 0.55 -0.1 1,570,053 + Echvi_1363 0.61 -0.6 1,570,109 - Echvi_1363 0.79 -3.4 1,570,110 + Echvi_1363 0.79 +0.3 1,570,111 - Echvi_1363 0.79 -1.5 1,570,177 + -0.3 1,570,310 + Echvi_1364 0.30 -1.0 1,570,424 + Echvi_1364 0.55 +0.7 1,570,424 + Echvi_1364 0.55 +0.1 1,570,562 + Echvi_1364 0.86 -0.2 1,570,562 + Echvi_1364 0.86 -1.3 1,570,641 + +0.5 1,570,641 + -0.1 1,570,641 + -0.7 1,570,687 - Echvi_1365 0.16 -0.2 1,570,798 + Echvi_1365 0.52 -1.7 1,570,798 + Echvi_1365 0.52 -2.6 1,570,798 + Echvi_1365 0.52 +1.3 1,570,896 + Echvi_1365 0.84 -1.1 1,570,946 + -1.0 1,571,028 + Echvi_1366 0.18 -0.9 1,571,073 + Echvi_1366 0.29 +2.4 1,571,217 + Echvi_1366 0.64 -1.1 1,571,217 + Echvi_1366 0.64 +0.1 1,571,217 + Echvi_1366 0.64 -1.7 1,571,282 + Echvi_1366 0.79 -0.7 1,571,297 + Echvi_1366 0.83 +1.1 1,571,297 + Echvi_1366 0.83 +0.0 1,571,297 + Echvi_1366 0.83 +0.3 1,571,303 + Echvi_1366 0.84 +0.0 1,571,303 + Echvi_1366 0.84 -1.9 1,571,303 + Echvi_1366 0.84 +0.7 1,571,306 + Echvi_1366 0.85 +1.3 1,571,538 - -1.3 1,571,589 + Echvi_1367 0.15 +0.3 1,571,592 + Echvi_1367 0.15 +1.0 1,571,592 + Echvi_1367 0.15 -0.3 1,571,602 + Echvi_1367 0.17 -2.2 1,571,603 - Echvi_1367 0.17 -2.3 1,571,670 - Echvi_1367 0.25 -1.0 1,571,691 + Echvi_1367 0.27 +0.0 1,571,692 - Echvi_1367 0.27 -2.7 1,571,695 + Echvi_1367 0.28 -0.2 1,571,696 - Echvi_1367 0.28 -0.6 1,571,769 - Echvi_1367 0.36 -1.5 1,571,925 + Echvi_1367 0.55 +1.4
Or see this region's nucleotide sequence