Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0959

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,108,470	+		Echvi_0958	0.71	+0.3
1,108,470	+		Echvi_0958	0.71	+0.3
1,108,471	-		Echvi_0958	0.71	-0.2
1,108,515	-		Echvi_0958	0.75	-1.1
1,108,549	+		Echvi_0958	0.78	-1.1
1,108,559	+		Echvi_0958	0.79	-1.6
1,108,559	+		Echvi_0958	0.79	-0.0
1,108,560	-		Echvi_0958	0.79	+1.2
1,108,560	-		Echvi_0958	0.79	+0.1
1,108,560	-		Echvi_0958	0.79	+0.3
1,108,560	-		Echvi_0958	0.79	+0.1
1,108,571	-		Echvi_0958	0.80	+1.9
1,108,589	-		Echvi_0958	0.81	-0.0
1,108,600	-		Echvi_0958	0.82	+0.7
1,108,603	-		Echvi_0958	0.82	-0.1
1,108,603	-		Echvi_0958	0.82	+1.1
1,108,625	+		Echvi_0958	0.84	-0.6
1,108,625	+		Echvi_0958	0.84	-1.7
1,108,625	+		Echvi_0958	0.84	+0.7
1,108,626	-		Echvi_0958	0.85	-1.4
1,108,626	-		Echvi_0958	0.85	-0.1
1,108,633	+		Echvi_0958	0.85	-0.4
1,108,673	+		Echvi_0958	0.89	-0.1
1,108,680	-		Echvi_0958	0.89	-1.9
1,108,684	+		Echvi_0958	0.90	-1.0
1,108,684	+		Echvi_0958	0.90	+0.2
1,108,685	-		Echvi_0958	0.90	-0.6
1,108,685	-		Echvi_0958	0.90	+1.1
1,108,685	-		Echvi_0958	0.90	-0.9
1,108,688	+				+1.9
1,108,689	-				-1.1
1,108,704	+				-0.0
1,108,704	+				+1.2
1,108,705	-				+0.2
1,108,705	-				+0.1
1,108,772	+				-1.0
1,108,773	-				+0.8
1,108,776	+				+0.6
1,108,796	-				-0.1
1,108,813	+				-0.2
1,108,834	-				-0.0
1,108,835	+				-1.0
1,108,835	+				+0.1
1,108,899	+				-3.0
1,108,916	+				-0.2
1,108,916	+				-1.7
1,108,916	+				+0.7
1,108,920	+				-0.7
1,108,921	-				-1.3
1,108,942	+				-0.8
1,108,942	+				+0.1
1,108,942	+				-0.1
1,108,943	-				-0.9
1,108,949	-				+0.5
1,109,029	+				-1.3
1,109,030	-				-0.2
1,109,030	-				+1.1
1,109,123	+				-0.7
1,109,139	-				-1.2
1,109,139	-				+0.0
1,109,139	-				-0.4
1,109,147	+				-0.2
1,109,147	+				-0.2
1,109,147	+				-0.5
1,109,148	-				-0.4
1,109,148	-				-1.6
1,109,153	+				+1.2
1,109,154	-				+0.9
1,109,154	-				+0.1
1,109,154	-				-0.1
1,109,157	+				-0.7
1,109,169	+				-0.1
1,109,169	+				+0.8
1,109,169	+				+0.8
1,109,169	+				-1.0
1,109,169	+				-0.7
1,109,169	+				-1.4
1,109,170	-				+1.9
1,109,170	-				+0.4
1,109,170	-				+0.7
1,109,170	-				-1.0
1,109,170	-				-0.1
1,109,170	-				+0.1
1,109,170	-				+0.7
1,109,172	-				+0.1
1,109,172	-				-0.2
1,109,172	-				+0.7
1,109,172	-				-0.2
1,109,199	-				-0.2
1,109,200	+				+0.1
1,109,200	+				-0.8
1,109,200	+				+0.3
1,109,200	+				-1.3
1,109,201	-				+0.0
1,109,201	-				-0.1
1,109,203	+				-1.4
1,109,203	+				-0.3
1,109,203	+				-0.5
1,109,203	+				-1.4
1,109,204	-				+0.0
1,109,204	-				-0.2
1,109,215	+				+0.3
1,109,231	+				+0.9
1,109,240	-				-0.6
1,109,240	-				-0.4
1,109,240	-				-0.9
1,109,243	+				+0.2
1,109,243	+				-0.1
1,109,244	-				+2.2
1,109,244	-				+0.1
1,109,246	-				+0.2
1,109,246	-				+0.8
1,109,246	-				+0.2
1,109,256	+				-0.4
1,109,256	+				-0.3
1,109,257	-				+0.0
1,109,257	-				-1.4
1,109,297	+				+0.7
1,109,297	+				+1.0
1,109,305	+				+1.0
1,109,306	-				+0.4
1,109,306	-				-1.5
1,109,306	-				+0.1
1,109,306	-				-0.3
1,109,319	+				-0.2
1,109,374	+				+0.9
1,109,375	-				-0.1
1,109,380	+				+0.2
1,109,380	+				+0.9
1,109,380	+				-0.0
1,109,380	+				+0.1
1,109,381	-				-0.3
1,109,381	-				+0.9
1,109,392	+				-1.4
1,109,402	+				-0.3
1,109,402	+				-0.3
1,109,402	+				-0.4
1,109,403	-				-0.7
1,109,403	-				-0.1
1,109,460	+				+2.3
1,109,461	-				+0.6
1,109,620	+		Echvi_0959	0.34	-0.4
1,109,621	-		Echvi_0959	0.34	+0.3
1,109,621	-		Echvi_0959	0.34	+0.1
1,109,694	-		Echvi_0959	0.48	-0.7
1,109,694	-		Echvi_0959	0.48	-1.1
1,109,720	+		Echvi_0959	0.53	-0.9
1,109,744	-		Echvi_0959	0.57	-1.3
1,109,827	+		Echvi_0959	0.73	+0.3
1,109,910	+		Echvi_0959	0.88	+0.1
1,109,925	-				-1.8
1,109,925	-				+1.2
1,109,977	-				-1.1
1,110,000	+				-0.8
1,110,001	-				-0.6
1,110,018	-				+0.3
1,110,018	-				+0.8
1,110,035	+				+0.4
1,110,035	+				+0.1
1,110,035	+				+0.0
1,110,035	+				+0.9
1,110,036	-				-2.2
1,110,039	+				-0.3
1,110,048	+				+0.5
1,110,056	+				+2.3
1,110,063	-				+1.2
1,110,128	+				-2.0
1,110,128	+				+1.2
1,110,128	+				+0.9
1,110,128	+				+1.9
1,110,128	+				+0.4
1,110,129	-				-1.4
1,110,173	-				-0.9
1,110,173	-				+1.7
1,110,314	+				+0.0
1,110,315	-				-0.1
1,110,315	-				+0.9
1,110,421	-		Echvi_0960	0.13	+1.5
1,110,569	+		Echvi_0960	0.19	+0.1
1,110,612	+		Echvi_0960	0.20	-0.5
1,110,612	+		Echvi_0960	0.20	-0.1
1,110,612	+		Echvi_0960	0.20	+1.4
1,110,612	+		Echvi_0960	0.20	+0.2
1,110,612	+		Echvi_0960	0.20	-1.9
1,110,613	-		Echvi_0960	0.21	-1.8
1,110,613	-		Echvi_0960	0.21	+0.2
1,110,613	-		Echvi_0960	0.21	+0.6
1,110,613	-		Echvi_0960	0.21	+0.5
1,110,613	-		Echvi_0960	0.21	-0.3
1,110,613	-		Echvi_0960	0.21	+0.9
1,110,613	-		Echvi_0960	0.21	-0.3
1,110,613	-		Echvi_0960	0.21	-1.3
1,110,613	-		Echvi_0960	0.21	-1.7
1,110,614	+		Echvi_0960	0.21	-1.0
1,110,614	+		Echvi_0960	0.21	+1.6
1,110,614	+		Echvi_0960	0.21	-0.0
1,110,615	-		Echvi_0960	0.21	+1.3
1,110,704	+		Echvi_0960	0.24	+1.3
1,110,704	+		Echvi_0960	0.24	+0.3
1,110,704	+		Echvi_0960	0.24	+0.1
1,110,705	-		Echvi_0960	0.24	-1.0
1,110,710	+		Echvi_0960	0.24	+0.8
1,110,748	-		Echvi_0960	0.26	-0.6
1,110,781	+		Echvi_0960	0.27	+0.1
1,110,781	+		Echvi_0960	0.27	+0.5
1,110,804	+		Echvi_0960	0.28	-2.0
1,110,804	+		Echvi_0960	0.28	+0.7
1,110,805	-		Echvi_0960	0.28	+0.1
1,110,805	-		Echvi_0960	0.28	+0.2
1,110,806	+		Echvi_0960	0.28	+0.3
1,110,806	+		Echvi_0960	0.28	-1.6
1,110,806	+		Echvi_0960	0.28	-1.5
1,110,806	+		Echvi_0960	0.28	+0.4
1,110,807	-		Echvi_0960	0.28	+0.6
1,110,810	-		Echvi_0960	0.28	+1.7
1,110,810	-		Echvi_0960	0.28	-0.7
1,110,830	-		Echvi_0960	0.29	+0.4
1,110,893	-		Echvi_0960	0.31	-2.4
1,110,921	+		Echvi_0960	0.32	+0.2
1,110,921	+		Echvi_0960	0.32	-0.2
1,110,922	-		Echvi_0960	0.32	+0.6
1,110,924	-		Echvi_0960	0.32	+2.2