Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0824 and Echvi_0825 are separated by 45 nucleotides Echvi_0825 and Echvi_0826 are separated by 186 nucleotides Echvi_0826 and Echvi_0827 are separated by 54 nucleotides
Echvi_0824: Echvi_0824 - iron-sulfur cluster binding protein, putative, at 941,965 to 942,924
_0824
Echvi_0825: Echvi_0825 - Holliday junction DNA helicase, RuvB subunit, at 942,970 to 944,007
_0825
Echvi_0826: Echvi_0826 - ribosomal protein S21, at 944,194 to 944,388
_0826
Echvi_0827: Echvi_0827 - Site-specific recombinase XerD, at 944,443 to 945,327
_0827
Position (kb) 942
943
944
945 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 941.974 kb on - strand at 942.064 kb on - strand, within Echvi_0824 at 942.256 kb on + strand, within Echvi_0824 at 942.256 kb on + strand, within Echvi_0824 at 942.262 kb on - strand, within Echvi_0824 at 942.267 kb on - strand, within Echvi_0824 at 942.267 kb on - strand, within Echvi_0824 at 942.273 kb on + strand, within Echvi_0824 at 942.356 kb on + strand, within Echvi_0824 at 942.357 kb on - strand, within Echvi_0824 at 942.453 kb on + strand, within Echvi_0824 at 942.453 kb on + strand, within Echvi_0824 at 942.453 kb on + strand, within Echvi_0824 at 942.566 kb on + strand, within Echvi_0824 at 942.581 kb on - strand, within Echvi_0824 at 942.623 kb on + strand, within Echvi_0824 at 942.624 kb on - strand, within Echvi_0824 at 942.624 kb on - strand, within Echvi_0824 at 942.624 kb on - strand, within Echvi_0824 at 942.624 kb on - strand, within Echvi_0824 at 942.677 kb on + strand, within Echvi_0824 at 942.678 kb on - strand, within Echvi_0824 at 942.678 kb on - strand, within Echvi_0824 at 942.683 kb on + strand, within Echvi_0824 at 942.779 kb on + strand, within Echvi_0824 at 942.780 kb on - strand, within Echvi_0824 at 942.780 kb on - strand, within Echvi_0824 at 942.780 kb on - strand, within Echvi_0824 at 942.783 kb on + strand, within Echvi_0824 at 942.784 kb on - strand, within Echvi_0824 at 942.784 kb on - strand, within Echvi_0824 at 942.852 kb on - strand at 942.963 kb on + strand at 942.963 kb on + strand at 942.963 kb on + strand at 942.963 kb on + strand at 942.963 kb on + strand at 942.963 kb on + strand at 942.963 kb on + strand at 942.963 kb on + strand at 942.964 kb on - strand at 942.964 kb on - strand at 942.964 kb on - strand at 942.964 kb on - strand at 942.964 kb on - strand at 942.964 kb on - strand at 942.965 kb on + strand at 942.972 kb on - strand at 942.972 kb on - strand at 942.972 kb on - strand at 943.029 kb on + strand at 943.030 kb on - strand at 943.030 kb on - strand at 943.030 kb on - strand at 943.030 kb on - strand at 943.030 kb on - strand at 943.030 kb on - strand at 943.278 kb on + strand, within Echvi_0825 at 943.531 kb on + strand, within Echvi_0825 at 943.632 kb on - strand, within Echvi_0825 at 943.749 kb on + strand, within Echvi_0825 at 944.007 kb on + strand at 944.008 kb on - strand at 944.008 kb on - strand at 944.026 kb on + strand at 944.027 kb on - strand at 944.032 kb on + strand at 944.034 kb on + strand at 944.045 kb on + strand at 944.046 kb on - strand at 944.061 kb on - strand at 944.105 kb on + strand at 944.105 kb on + strand at 944.117 kb on + strand at 944.125 kb on - strand at 944.142 kb on - strand at 944.459 kb on + strand at 944.460 kb on - strand at 944.464 kb on + strand at 944.509 kb on + strand at 944.729 kb on + strand, within Echvi_0827 at 944.730 kb on - strand, within Echvi_0827 at 944.859 kb on - strand, within Echvi_0827
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 941,974 - -1.8 942,064 - Echvi_0824 0.10 -0.5 942,256 + Echvi_0824 0.30 +1.2 942,256 + Echvi_0824 0.30 +2.3 942,262 - Echvi_0824 0.31 +0.3 942,267 - Echvi_0824 0.31 -0.6 942,267 - Echvi_0824 0.31 +1.9 942,273 + Echvi_0824 0.32 -0.3 942,356 + Echvi_0824 0.41 -1.3 942,357 - Echvi_0824 0.41 +0.4 942,453 + Echvi_0824 0.51 -0.3 942,453 + Echvi_0824 0.51 +0.9 942,453 + Echvi_0824 0.51 -1.3 942,566 + Echvi_0824 0.63 -0.6 942,581 - Echvi_0824 0.64 +0.2 942,623 + Echvi_0824 0.69 -0.6 942,624 - Echvi_0824 0.69 -1.7 942,624 - Echvi_0824 0.69 -0.9 942,624 - Echvi_0824 0.69 -0.8 942,624 - Echvi_0824 0.69 -0.2 942,677 + Echvi_0824 0.74 -0.1 942,678 - Echvi_0824 0.74 +0.9 942,678 - Echvi_0824 0.74 -0.5 942,683 + Echvi_0824 0.75 -1.1 942,779 + Echvi_0824 0.85 +1.0 942,780 - Echvi_0824 0.85 -0.8 942,780 - Echvi_0824 0.85 -0.4 942,780 - Echvi_0824 0.85 -0.5 942,783 + Echvi_0824 0.85 -0.2 942,784 - Echvi_0824 0.85 +0.3 942,784 - Echvi_0824 0.85 +0.0 942,852 - +0.5 942,963 + -3.0 942,963 + -0.2 942,963 + -0.0 942,963 + -0.7 942,963 + +0.4 942,963 + +1.0 942,963 + +0.7 942,963 + +0.4 942,964 - -0.6 942,964 - +0.7 942,964 - -0.2 942,964 - -0.1 942,964 - +0.4 942,964 - +0.6 942,965 + +0.0 942,972 - -1.0 942,972 - -0.6 942,972 - -1.2 943,029 + +1.1 943,030 - -1.6 943,030 - +0.4 943,030 - +1.5 943,030 - +0.5 943,030 - -0.4 943,030 - -1.0 943,278 + Echvi_0825 0.30 +0.9 943,531 + Echvi_0825 0.54 -0.9 943,632 - Echvi_0825 0.64 -1.5 943,749 + Echvi_0825 0.75 +0.6 944,007 + -0.5 944,008 - +0.3 944,008 - +1.7 944,026 + -0.5 944,027 - -0.9 944,032 + -0.7 944,034 + +0.2 944,045 + -0.8 944,046 - -0.4 944,061 - +0.1 944,105 + -0.5 944,105 + -0.4 944,117 + +0.2 944,125 - -1.6 944,142 - -0.8 944,459 + +0.6 944,460 - +1.5 944,464 + -1.1 944,509 + -1.8 944,729 + Echvi_0827 0.32 -0.1 944,730 - Echvi_0827 0.32 +2.0 944,859 - Echvi_0827 0.47 +2.0
Or see this region's nucleotide sequence