Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0728

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0725 and Echvi_0726 overlap by 4 nucleotidesEchvi_0726 and Echvi_0727 are separated by 11 nucleotidesEchvi_0727 and Echvi_0728 overlap by 6 nucleotidesEchvi_0728 and Echvi_0729 are separated by 354 nucleotidesEchvi_0729 and Echvi_0730 are separated by 101 nucleotides Echvi_0725: Echvi_0725 - hypothetical protein, at 815,301 to 815,741 _0725 Echvi_0726: Echvi_0726 - RNA polymerase sigma factor, sigma-70 family, at 815,738 to 816,226 _0726 Echvi_0727: Echvi_0727 - hypothetical protein, at 816,238 to 816,489 _0727 Echvi_0728: Echvi_0728 - hypothetical protein, at 816,484 to 816,762 _0728 Echvi_0729: Echvi_0729 - tRNA, at 817,117 to 817,192 _0729 Echvi_0730: Echvi_0730 - hypothetical protein, at 817,294 to 818,628 _0730 Position (kb) 816 817Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 815.701 kb on + strandat 815.704 kb on + strandat 815.704 kb on + strandat 815.704 kb on + strandat 815.705 kb on - strandat 815.792 kb on - strand, within Echvi_0726at 815.824 kb on + strand, within Echvi_0726at 815.825 kb on - strand, within Echvi_0726at 815.826 kb on + strand, within Echvi_0726at 815.826 kb on + strand, within Echvi_0726at 815.827 kb on - strand, within Echvi_0726at 815.827 kb on - strand, within Echvi_0726at 815.827 kb on - strand, within Echvi_0726at 815.827 kb on - strand, within Echvi_0726at 815.914 kb on + strand, within Echvi_0726at 815.914 kb on + strand, within Echvi_0726at 815.914 kb on + strand, within Echvi_0726at 815.914 kb on + strand, within Echvi_0726at 815.990 kb on + strand, within Echvi_0726at 815.990 kb on + strand, within Echvi_0726at 815.990 kb on + strand, within Echvi_0726at 816.166 kb on - strand, within Echvi_0726at 816.202 kb on + strandat 816.202 kb on + strandat 816.203 kb on - strandat 816.204 kb on + strandat 816.204 kb on + strandat 816.204 kb on + strandat 816.204 kb on + strandat 816.204 kb on + strandat 816.205 kb on - strandat 816.205 kb on - strandat 816.205 kb on - strandat 816.205 kb on - strandat 816.205 kb on - strandat 816.205 kb on - strandat 816.205 kb on - strandat 816.229 kb on - strandat 816.233 kb on - strandat 816.236 kb on + strandat 816.237 kb on - strandat 816.237 kb on - strandat 816.237 kb on - strandat 816.246 kb on - strandat 816.250 kb on - strandat 816.253 kb on - strandat 816.276 kb on + strand, within Echvi_0727at 816.532 kb on + strand, within Echvi_0728at 816.571 kb on + strand, within Echvi_0728at 816.649 kb on + strand, within Echvi_0728at 816.836 kb on - strandat 816.836 kb on - strandat 817.033 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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815,701 + -0.9
815,704 + -0.6
815,704 + -2.2
815,704 + +0.2
815,705 - +1.5
815,792 - Echvi_0726 0.11 +1.2
815,824 + Echvi_0726 0.18 +0.8
815,825 - Echvi_0726 0.18 -1.0
815,826 + Echvi_0726 0.18 +0.5
815,826 + Echvi_0726 0.18 -0.8
815,827 - Echvi_0726 0.18 -0.2
815,827 - Echvi_0726 0.18 +0.2
815,827 - Echvi_0726 0.18 -0.2
815,827 - Echvi_0726 0.18 -0.4
815,914 + Echvi_0726 0.36 -3.5
815,914 + Echvi_0726 0.36 -1.4
815,914 + Echvi_0726 0.36 -0.2
815,914 + Echvi_0726 0.36 -0.1
815,990 + Echvi_0726 0.52 +0.6
815,990 + Echvi_0726 0.52 -0.6
815,990 + Echvi_0726 0.52 -0.4
816,166 - Echvi_0726 0.88 +0.6
816,202 + +0.1
816,202 + +0.0
816,203 - -2.6
816,204 + +0.3
816,204 + +1.0
816,204 + -0.8
816,204 + +0.6
816,204 + -0.0
816,205 - -1.0
816,205 - -0.8
816,205 - +0.0
816,205 - +0.1
816,205 - -1.0
816,205 - +2.4
816,205 - +1.5
816,229 - +0.8
816,233 - +1.5
816,236 + +0.8
816,237 - +1.1
816,237 - -1.9
816,237 - +0.2
816,246 - +1.6
816,250 - -0.6
816,253 - -0.9
816,276 + Echvi_0727 0.15 -2.3
816,532 + Echvi_0728 0.17 +2.8
816,571 + Echvi_0728 0.31 +0.0
816,649 + Echvi_0728 0.59 -2.2
816,836 - +0.7
816,836 - -0.2
817,033 + +1.4

Or see this region's nucleotide sequence