Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0724 and Echvi_0725 overlap by 4 nucleotides Echvi_0725 and Echvi_0726 overlap by 4 nucleotides Echvi_0726 and Echvi_0727 are separated by 11 nucleotides Echvi_0727 and Echvi_0728 overlap by 6 nucleotides Echvi_0728 and Echvi_0729 are separated by 354 nucleotides Echvi_0729 and Echvi_0730 are separated by 101 nucleotides
Echvi_0724: Echvi_0724 - hypothetical protein, at 814,765 to 815,304
_0724
Echvi_0725: Echvi_0725 - hypothetical protein, at 815,301 to 815,741
_0725
Echvi_0726: Echvi_0726 - RNA polymerase sigma factor, sigma-70 family, at 815,738 to 816,226
_0726
Echvi_0727: Echvi_0727 - hypothetical protein, at 816,238 to 816,489
_0727
Echvi_0728: Echvi_0728 - hypothetical protein, at 816,484 to 816,762
_0728
Echvi_0729: Echvi_0729 - tRNA, at 817,117 to 817,192
_0729
Echvi_0730: Echvi_0730 - hypothetical protein, at 817,294 to 818,628
_0730
Position (kb) 816
817 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 815.285 kb on - strand at 815.333 kb on + strand at 815.334 kb on - strand at 815.406 kb on - strand, within Echvi_0725 at 815.701 kb on + strand at 815.704 kb on + strand at 815.704 kb on + strand at 815.704 kb on + strand at 815.705 kb on - strand at 815.792 kb on - strand, within Echvi_0726 at 815.824 kb on + strand, within Echvi_0726 at 815.825 kb on - strand, within Echvi_0726 at 815.826 kb on + strand, within Echvi_0726 at 815.826 kb on + strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.990 kb on + strand, within Echvi_0726 at 815.990 kb on + strand, within Echvi_0726 at 815.990 kb on + strand, within Echvi_0726 at 816.166 kb on - strand, within Echvi_0726 at 816.202 kb on + strand at 816.202 kb on + strand at 816.203 kb on - strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.229 kb on - strand at 816.233 kb on - strand at 816.236 kb on + strand at 816.237 kb on - strand at 816.237 kb on - strand at 816.237 kb on - strand at 816.246 kb on - strand at 816.250 kb on - strand at 816.253 kb on - strand at 816.276 kb on + strand, within Echvi_0727 at 816.532 kb on + strand, within Echvi_0728 at 816.571 kb on + strand, within Echvi_0728 at 816.649 kb on + strand, within Echvi_0728 at 816.836 kb on - strand at 816.836 kb on - strand at 817.033 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 815,285 - +0.5 815,333 + +2.2 815,334 - -0.1 815,406 - Echvi_0725 0.24 -0.5 815,701 + -0.9 815,704 + -0.6 815,704 + -2.2 815,704 + +0.2 815,705 - +1.5 815,792 - Echvi_0726 0.11 +1.2 815,824 + Echvi_0726 0.18 +0.8 815,825 - Echvi_0726 0.18 -1.0 815,826 + Echvi_0726 0.18 +0.5 815,826 + Echvi_0726 0.18 -0.8 815,827 - Echvi_0726 0.18 -0.2 815,827 - Echvi_0726 0.18 +0.2 815,827 - Echvi_0726 0.18 -0.2 815,827 - Echvi_0726 0.18 -0.4 815,914 + Echvi_0726 0.36 -3.5 815,914 + Echvi_0726 0.36 -1.4 815,914 + Echvi_0726 0.36 -0.2 815,914 + Echvi_0726 0.36 -0.1 815,990 + Echvi_0726 0.52 +0.6 815,990 + Echvi_0726 0.52 -0.6 815,990 + Echvi_0726 0.52 -0.4 816,166 - Echvi_0726 0.88 +0.6 816,202 + +0.1 816,202 + +0.0 816,203 - -2.6 816,204 + +0.3 816,204 + +1.0 816,204 + -0.8 816,204 + +0.6 816,204 + -0.0 816,205 - -1.0 816,205 - -0.8 816,205 - +0.0 816,205 - +0.1 816,205 - -1.0 816,205 - +2.4 816,205 - +1.5 816,229 - +0.8 816,233 - +1.5 816,236 + +0.8 816,237 - +1.1 816,237 - -1.9 816,237 - +0.2 816,246 - +1.6 816,250 - -0.6 816,253 - -0.9 816,276 + Echvi_0727 0.15 -2.3 816,532 + Echvi_0728 0.17 +2.8 816,571 + Echvi_0728 0.31 +0.0 816,649 + Echvi_0728 0.59 -2.2 816,836 - +0.7 816,836 - -0.2 817,033 + +1.4
Or see this region's nucleotide sequence