Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0724

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0722 and Echvi_0723 are separated by 59 nucleotidesEchvi_0723 and Echvi_0724 are separated by 30 nucleotidesEchvi_0724 and Echvi_0725 overlap by 4 nucleotidesEchvi_0725 and Echvi_0726 overlap by 4 nucleotidesEchvi_0726 and Echvi_0727 are separated by 11 nucleotides Echvi_0722: Echvi_0722 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 812,825 to 814,201 _0722 Echvi_0723: Echvi_0723 - hypothetical protein, at 814,261 to 814,734 _0723 Echvi_0724: Echvi_0724 - hypothetical protein, at 814,765 to 815,304 _0724 Echvi_0725: Echvi_0725 - hypothetical protein, at 815,301 to 815,741 _0725 Echvi_0726: Echvi_0726 - RNA polymerase sigma factor, sigma-70 family, at 815,738 to 816,226 _0726 Echvi_0727: Echvi_0727 - hypothetical protein, at 816,238 to 816,489 _0727 Position (kb) 814 815 816Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 813.788 kb on + strand, within Echvi_0722at 813.871 kb on - strand, within Echvi_0722at 813.874 kb on + strand, within Echvi_0722at 813.875 kb on - strand, within Echvi_0722at 813.875 kb on - strand, within Echvi_0722at 813.875 kb on - strand, within Echvi_0722at 813.941 kb on - strand, within Echvi_0722at 813.950 kb on - strand, within Echvi_0722at 813.981 kb on + strand, within Echvi_0722at 813.982 kb on - strand, within Echvi_0722at 813.982 kb on - strand, within Echvi_0722at 813.982 kb on - strand, within Echvi_0722at 814.108 kb on - strandat 814.121 kb on + strandat 814.122 kb on - strandat 814.122 kb on - strandat 814.122 kb on - strandat 814.122 kb on - strandat 814.126 kb on + strandat 814.126 kb on + strandat 814.126 kb on + strandat 814.320 kb on + strand, within Echvi_0723at 814.321 kb on - strand, within Echvi_0723at 814.388 kb on + strand, within Echvi_0723at 814.389 kb on - strand, within Echvi_0723at 814.436 kb on + strand, within Echvi_0723at 814.437 kb on - strand, within Echvi_0723at 814.509 kb on + strand, within Echvi_0723at 814.652 kb on + strand, within Echvi_0723at 814.663 kb on + strand, within Echvi_0723at 814.672 kb on - strand, within Echvi_0723at 814.715 kb on - strandat 814.735 kb on - strandat 814.755 kb on - strandat 814.755 kb on - strandat 814.771 kb on - strandat 814.771 kb on - strandat 814.890 kb on + strand, within Echvi_0724at 814.992 kb on - strand, within Echvi_0724at 814.992 kb on - strand, within Echvi_0724at 814.998 kb on + strand, within Echvi_0724at 815.027 kb on + strand, within Echvi_0724at 815.183 kb on + strand, within Echvi_0724at 815.183 kb on + strand, within Echvi_0724at 815.184 kb on - strand, within Echvi_0724at 815.184 kb on - strand, within Echvi_0724at 815.285 kb on - strandat 815.333 kb on + strandat 815.334 kb on - strandat 815.406 kb on - strand, within Echvi_0725at 815.701 kb on + strandat 815.704 kb on + strandat 815.704 kb on + strandat 815.704 kb on + strandat 815.705 kb on - strandat 815.792 kb on - strand, within Echvi_0726at 815.824 kb on + strand, within Echvi_0726at 815.825 kb on - strand, within Echvi_0726at 815.826 kb on + strand, within Echvi_0726at 815.826 kb on + strand, within Echvi_0726at 815.827 kb on - strand, within Echvi_0726at 815.827 kb on - strand, within Echvi_0726at 815.827 kb on - strand, within Echvi_0726at 815.827 kb on - strand, within Echvi_0726at 815.914 kb on + strand, within Echvi_0726at 815.914 kb on + strand, within Echvi_0726at 815.914 kb on + strand, within Echvi_0726at 815.914 kb on + strand, within Echvi_0726at 815.990 kb on + strand, within Echvi_0726at 815.990 kb on + strand, within Echvi_0726at 815.990 kb on + strand, within Echvi_0726at 816.166 kb on - strand, within Echvi_0726at 816.202 kb on + strandat 816.202 kb on + strandat 816.203 kb on - strandat 816.204 kb on + strandat 816.204 kb on + strandat 816.204 kb on + strandat 816.204 kb on + strandat 816.204 kb on + strandat 816.205 kb on - strandat 816.205 kb on - strandat 816.205 kb on - strandat 816.205 kb on - strandat 816.205 kb on - strandat 816.205 kb on - strandat 816.205 kb on - strandat 816.229 kb on - strandat 816.233 kb on - strandat 816.236 kb on + strandat 816.237 kb on - strandat 816.237 kb on - strandat 816.237 kb on - strandat 816.246 kb on - strandat 816.250 kb on - strandat 816.253 kb on - strandat 816.276 kb on + strand, within Echvi_0727

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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813,788 + Echvi_0722 0.70 -0.9
813,871 - Echvi_0722 0.76 -2.2
813,874 + Echvi_0722 0.76 +0.6
813,875 - Echvi_0722 0.76 -1.1
813,875 - Echvi_0722 0.76 +0.2
813,875 - Echvi_0722 0.76 -1.6
813,941 - Echvi_0722 0.81 +0.2
813,950 - Echvi_0722 0.82 -0.7
813,981 + Echvi_0722 0.84 +0.1
813,982 - Echvi_0722 0.84 -0.0
813,982 - Echvi_0722 0.84 +1.0
813,982 - Echvi_0722 0.84 -0.3
814,108 - -0.1
814,121 + +0.1
814,122 - +1.0
814,122 - +0.6
814,122 - +1.1
814,122 - +0.3
814,126 + -0.0
814,126 + -0.4
814,126 + +0.6
814,320 + Echvi_0723 0.12 -0.0
814,321 - Echvi_0723 0.13 +0.4
814,388 + Echvi_0723 0.27 +2.8
814,389 - Echvi_0723 0.27 -0.0
814,436 + Echvi_0723 0.37 +0.0
814,437 - Echvi_0723 0.37 -0.3
814,509 + Echvi_0723 0.52 +0.8
814,652 + Echvi_0723 0.82 -0.3
814,663 + Echvi_0723 0.85 +0.6
814,672 - Echvi_0723 0.87 +1.6
814,715 - +0.6
814,735 - -0.1
814,755 - +0.8
814,755 - -1.0
814,771 - -1.2
814,771 - +0.4
814,890 + Echvi_0724 0.23 -1.6
814,992 - Echvi_0724 0.42 -0.8
814,992 - Echvi_0724 0.42 -1.0
814,998 + Echvi_0724 0.43 +0.2
815,027 + Echvi_0724 0.49 -2.5
815,183 + Echvi_0724 0.77 -1.8
815,183 + Echvi_0724 0.77 -1.6
815,184 - Echvi_0724 0.78 -0.8
815,184 - Echvi_0724 0.78 +0.8
815,285 - +0.5
815,333 + +2.2
815,334 - -0.1
815,406 - Echvi_0725 0.24 -0.5
815,701 + -0.9
815,704 + -0.6
815,704 + -2.2
815,704 + +0.2
815,705 - +1.5
815,792 - Echvi_0726 0.11 +1.2
815,824 + Echvi_0726 0.18 +0.8
815,825 - Echvi_0726 0.18 -1.0
815,826 + Echvi_0726 0.18 +0.5
815,826 + Echvi_0726 0.18 -0.8
815,827 - Echvi_0726 0.18 -0.2
815,827 - Echvi_0726 0.18 +0.2
815,827 - Echvi_0726 0.18 -0.2
815,827 - Echvi_0726 0.18 -0.4
815,914 + Echvi_0726 0.36 -3.5
815,914 + Echvi_0726 0.36 -1.4
815,914 + Echvi_0726 0.36 -0.2
815,914 + Echvi_0726 0.36 -0.1
815,990 + Echvi_0726 0.52 +0.6
815,990 + Echvi_0726 0.52 -0.6
815,990 + Echvi_0726 0.52 -0.4
816,166 - Echvi_0726 0.88 +0.6
816,202 + +0.1
816,202 + +0.0
816,203 - -2.6
816,204 + +0.3
816,204 + +1.0
816,204 + -0.8
816,204 + +0.6
816,204 + -0.0
816,205 - -1.0
816,205 - -0.8
816,205 - +0.0
816,205 - +0.1
816,205 - -1.0
816,205 - +2.4
816,205 - +1.5
816,229 - +0.8
816,233 - +1.5
816,236 + +0.8
816,237 - +1.1
816,237 - -1.9
816,237 - +0.2
816,246 - +1.6
816,250 - -0.6
816,253 - -0.9
816,276 + Echvi_0727 0.15 -2.3

Or see this region's nucleotide sequence