Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0716 and Echvi_0717 are separated by 194 nucleotides Echvi_0717 and Echvi_0718 are separated by 22 nucleotides Echvi_0718 and Echvi_0719 are separated by 217 nucleotides
Echvi_0716: Echvi_0716 - Asparaginase, at 808,261 to 809,349
_0716
Echvi_0717: Echvi_0717 - DnaK suppressor protein, at 809,544 to 809,927
_0717
Echvi_0718: Echvi_0718 - segregation and condensation protein B, at 809,950 to 810,510
_0718
Echvi_0719: Echvi_0719 - pseudouridine synthase, at 810,728 to 811,873
_0719
Position (kb) 809
810
811 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 809.120 kb on + strand, within Echvi_0716 at 809.120 kb on + strand, within Echvi_0716 at 809.121 kb on - strand, within Echvi_0716 at 809.121 kb on - strand, within Echvi_0716 at 809.121 kb on - strand, within Echvi_0716 at 809.144 kb on - strand, within Echvi_0716 at 809.199 kb on + strand, within Echvi_0716 at 809.303 kb on - strand at 809.323 kb on + strand at 809.388 kb on + strand at 809.396 kb on + strand at 809.402 kb on + strand at 809.408 kb on + strand at 809.408 kb on + strand at 809.408 kb on + strand at 809.410 kb on + strand at 809.515 kb on + strand at 809.515 kb on + strand at 809.515 kb on + strand at 809.515 kb on + strand at 809.516 kb on - strand at 809.516 kb on - strand at 809.519 kb on + strand at 809.543 kb on + strand at 809.543 kb on + strand at 809.543 kb on + strand at 809.568 kb on + strand at 809.569 kb on - strand at 809.729 kb on + strand, within Echvi_0717 at 809.734 kb on + strand, within Echvi_0717 at 809.735 kb on - strand, within Echvi_0717 at 809.787 kb on - strand, within Echvi_0717 at 809.826 kb on + strand, within Echvi_0717 at 809.826 kb on + strand, within Echvi_0717 at 809.826 kb on + strand, within Echvi_0717 at 809.827 kb on - strand, within Echvi_0717 at 809.850 kb on - strand, within Echvi_0717 at 809.915 kb on - strand at 809.941 kb on + strand at 809.942 kb on - strand at 809.970 kb on + strand at 809.970 kb on + strand at 809.970 kb on + strand at 809.970 kb on + strand at 809.970 kb on + strand at 809.971 kb on - strand at 809.981 kb on + strand at 809.982 kb on - strand at 809.984 kb on + strand at 809.985 kb on - strand at 809.985 kb on - strand at 810.201 kb on - strand, within Echvi_0718 at 810.424 kb on + strand, within Echvi_0718 at 810.424 kb on + strand, within Echvi_0718 at 810.525 kb on + strand at 810.525 kb on + strand at 810.525 kb on + strand at 810.525 kb on + strand at 810.526 kb on - strand at 810.526 kb on - strand at 810.526 kb on - strand at 810.526 kb on - strand at 810.526 kb on - strand at 810.526 kb on - strand at 810.526 kb on - strand at 810.526 kb on - strand at 810.529 kb on - strand at 810.536 kb on + strand at 810.536 kb on + strand at 810.536 kb on + strand at 810.537 kb on - strand at 810.634 kb on - strand at 810.682 kb on - strand at 810.682 kb on - strand at 810.685 kb on - strand at 810.694 kb on - strand at 810.703 kb on + strand at 810.706 kb on - strand at 810.965 kb on + strand, within Echvi_0719 at 810.965 kb on + strand, within Echvi_0719
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 809,120 + Echvi_0716 0.79 +0.4 809,120 + Echvi_0716 0.79 +1.1 809,121 - Echvi_0716 0.79 -0.4 809,121 - Echvi_0716 0.79 +0.1 809,121 - Echvi_0716 0.79 +3.4 809,144 - Echvi_0716 0.81 -0.5 809,199 + Echvi_0716 0.86 -0.2 809,303 - -2.3 809,323 + -0.6 809,388 + +0.8 809,396 + +0.6 809,402 + -1.2 809,408 + -0.6 809,408 + +0.6 809,408 + +0.2 809,410 + +0.1 809,515 + +0.6 809,515 + -1.3 809,515 + -0.4 809,515 + -0.0 809,516 - -1.4 809,516 - -1.5 809,519 + -1.0 809,543 + +0.8 809,543 + -0.3 809,543 + +0.8 809,568 + -0.6 809,569 - -1.7 809,729 + Echvi_0717 0.48 -1.8 809,734 + Echvi_0717 0.49 -2.1 809,735 - Echvi_0717 0.50 -1.4 809,787 - Echvi_0717 0.63 -0.4 809,826 + Echvi_0717 0.73 -0.8 809,826 + Echvi_0717 0.73 -2.5 809,826 + Echvi_0717 0.73 -0.4 809,827 - Echvi_0717 0.74 -0.4 809,850 - Echvi_0717 0.80 +0.6 809,915 - -2.4 809,941 + +0.7 809,942 - -1.4 809,970 + +0.4 809,970 + +0.6 809,970 + +0.4 809,970 + +0.7 809,970 + -0.6 809,971 - -0.7 809,981 + +0.5 809,982 - -0.2 809,984 + +0.5 809,985 - +1.8 809,985 - -0.8 810,201 - Echvi_0718 0.45 -1.8 810,424 + Echvi_0718 0.84 -2.0 810,424 + Echvi_0718 0.84 +1.8 810,525 + +1.1 810,525 + +1.0 810,525 + +1.2 810,525 + +1.5 810,526 - +0.6 810,526 - -0.7 810,526 - -0.8 810,526 - +0.6 810,526 - +0.3 810,526 - -0.0 810,526 - +0.6 810,526 - +0.4 810,529 - -0.3 810,536 + -2.2 810,536 + -1.9 810,536 + +0.2 810,537 - -0.5 810,634 - -0.8 810,682 - -0.8 810,682 - +0.5 810,685 - +0.5 810,694 - -1.4 810,703 + +0.4 810,706 - -0.2 810,965 + Echvi_0719 0.21 -0.2 810,965 + Echvi_0719 0.21 -0.4
Or see this region's nucleotide sequence