Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0589 and Echvi_0590 are separated by 152 nucleotides Echvi_0590 and Echvi_0591 are separated by 6 nucleotides Echvi_0591 and Echvi_0592 are separated by 75 nucleotides
Echvi_0589: Echvi_0589 - hypothetical protein, at 667,106 to 667,942
_0589
Echvi_0590: Echvi_0590 - DnaJ-class molecular chaperone with C-terminal Zn finger domain, at 668,095 to 669,210
_0590
Echvi_0591: Echvi_0591 - Molecular chaperone GrpE (heat shock protein), at 669,217 to 669,837
_0591
Echvi_0592: Echvi_0592 - Obg family GTPase CgtA, at 669,913 to 670,905
_0592
Position (kb) 668
669
670 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 667.107 kb on + strand at 667.112 kb on + strand at 667.134 kb on - strand at 667.269 kb on + strand, within Echvi_0589 at 667.297 kb on + strand, within Echvi_0589 at 667.297 kb on + strand, within Echvi_0589 at 667.298 kb on - strand, within Echvi_0589 at 667.299 kb on + strand, within Echvi_0589 at 667.302 kb on - strand, within Echvi_0589 at 667.387 kb on - strand, within Echvi_0589 at 667.406 kb on - strand, within Echvi_0589 at 667.521 kb on - strand, within Echvi_0589 at 667.532 kb on - strand, within Echvi_0589 at 667.623 kb on + strand, within Echvi_0589 at 667.624 kb on - strand, within Echvi_0589 at 667.624 kb on - strand, within Echvi_0589 at 667.624 kb on - strand, within Echvi_0589 at 667.628 kb on - strand, within Echvi_0589 at 667.735 kb on + strand, within Echvi_0589 at 667.760 kb on - strand, within Echvi_0589 at 667.770 kb on + strand, within Echvi_0589 at 667.789 kb on + strand, within Echvi_0589 at 667.790 kb on - strand, within Echvi_0589 at 667.866 kb on + strand at 667.867 kb on - strand at 667.947 kb on - strand at 667.947 kb on - strand at 667.966 kb on + strand at 667.967 kb on - strand at 667.980 kb on - strand at 667.999 kb on + strand at 668.000 kb on - strand at 668.000 kb on - strand at 668.011 kb on - strand at 668.075 kb on + strand at 668.081 kb on + strand at 668.081 kb on + strand at 668.081 kb on + strand at 668.081 kb on + strand at 668.081 kb on + strand at 668.081 kb on + strand at 668.081 kb on + strand at 668.081 kb on + strand at 668.081 kb on + strand at 668.082 kb on - strand at 668.082 kb on - strand at 668.366 kb on - strand, within Echvi_0590 at 668.402 kb on + strand, within Echvi_0590 at 668.403 kb on - strand at 668.411 kb on + strand, within Echvi_0590 at 668.411 kb on + strand, within Echvi_0590 at 668.443 kb on - strand, within Echvi_0590 at 669.211 kb on - strand at 669.214 kb on - strand at 669.214 kb on - strand at 669.219 kb on - strand at 669.770 kb on - strand, within Echvi_0591 at 669.770 kb on - strand, within Echvi_0591 at 669.770 kb on - strand, within Echvi_0591 at 669.805 kb on - strand at 669.805 kb on - strand at 669.805 kb on - strand at 669.823 kb on - strand at 669.838 kb on - strand at 669.838 kb on - strand at 669.838 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 667,107 + -0.7 667,112 + -2.5 667,134 - -2.6 667,269 + Echvi_0589 0.19 -1.7 667,297 + Echvi_0589 0.23 -3.8 667,297 + Echvi_0589 0.23 +0.6 667,298 - Echvi_0589 0.23 -1.4 667,299 + Echvi_0589 0.23 -1.0 667,302 - Echvi_0589 0.23 +3.8 667,387 - Echvi_0589 0.34 -0.0 667,406 - Echvi_0589 0.36 -1.3 667,521 - Echvi_0589 0.50 -0.6 667,532 - Echvi_0589 0.51 -0.9 667,623 + Echvi_0589 0.62 -1.4 667,624 - Echvi_0589 0.62 +1.8 667,624 - Echvi_0589 0.62 -2.1 667,624 - Echvi_0589 0.62 +0.1 667,628 - Echvi_0589 0.62 -1.4 667,735 + Echvi_0589 0.75 -1.3 667,760 - Echvi_0589 0.78 -0.3 667,770 + Echvi_0589 0.79 +0.8 667,789 + Echvi_0589 0.82 +0.2 667,790 - Echvi_0589 0.82 -0.8 667,866 + -0.6 667,867 - +1.4 667,947 - -1.2 667,947 - -0.8 667,966 + -3.0 667,967 - -2.8 667,980 - -0.6 667,999 + -0.2 668,000 - -0.2 668,000 - -0.1 668,011 - -0.0 668,075 + +0.9 668,081 + +0.0 668,081 + +1.0 668,081 + +0.9 668,081 + -0.2 668,081 + -0.8 668,081 + +0.6 668,081 + -0.4 668,081 + +0.2 668,081 + +1.2 668,082 - +0.4 668,082 - +1.0 668,366 - Echvi_0590 0.24 +0.8 668,402 + Echvi_0590 0.28 +0.7 668,403 - +1.8 668,411 + Echvi_0590 0.28 -1.4 668,411 + Echvi_0590 0.28 -1.2 668,443 - Echvi_0590 0.31 -1.8 669,211 - -0.3 669,214 - +0.5 669,214 - -0.3 669,219 - -1.0 669,770 - Echvi_0591 0.89 +0.8 669,770 - Echvi_0591 0.89 -1.7 669,770 - Echvi_0591 0.89 -2.1 669,805 - -0.5 669,805 - +2.8 669,805 - +0.0 669,823 - +0.8 669,838 - +0.6 669,838 - -0.2 669,838 - +0.8
Or see this region's nucleotide sequence