Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0517 and Echvi_0518 are separated by 99 nucleotides Echvi_0518 and Echvi_0519 are separated by 3 nucleotides
Echvi_0517: Echvi_0517 - Glycoside hydrolase 97., at 579,110 to 581,041
_0517
Echvi_0518: Echvi_0518 - Uncharacterized protein conserved in bacteria, at 581,141 to 583,495
_0518
Echvi_0519: Echvi_0519 - Beta-xylosidase, at 583,499 to 584,986
_0519
Position (kb) 581
582
583
584 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 580.219 kb on + strand, within Echvi_0517 at 580.534 kb on + strand, within Echvi_0517 at 580.538 kb on + strand, within Echvi_0517 at 580.612 kb on + strand, within Echvi_0517 at 580.612 kb on + strand, within Echvi_0517 at 580.613 kb on - strand, within Echvi_0517 at 580.613 kb on - strand, within Echvi_0517 at 580.616 kb on + strand, within Echvi_0517 at 580.616 kb on + strand, within Echvi_0517 at 580.616 kb on + strand, within Echvi_0517 at 580.617 kb on - strand, within Echvi_0517 at 580.617 kb on - strand, within Echvi_0517 at 580.617 kb on - strand, within Echvi_0517 at 580.740 kb on + strand, within Echvi_0517 at 580.740 kb on + strand, within Echvi_0517 at 580.776 kb on + strand, within Echvi_0517 at 580.777 kb on - strand, within Echvi_0517 at 580.777 kb on - strand, within Echvi_0517 at 580.833 kb on - strand, within Echvi_0517 at 580.874 kb on + strand at 580.874 kb on + strand at 580.874 kb on + strand at 580.875 kb on - strand at 580.875 kb on - strand at 580.898 kb on - strand at 581.009 kb on - strand at 581.009 kb on - strand at 581.031 kb on - strand at 581.107 kb on + strand at 581.142 kb on + strand at 581.142 kb on + strand at 581.400 kb on + strand, within Echvi_0518 at 581.458 kb on + strand, within Echvi_0518 at 581.637 kb on - strand, within Echvi_0518 at 581.643 kb on + strand, within Echvi_0518 at 581.643 kb on + strand, within Echvi_0518 at 581.644 kb on - strand, within Echvi_0518 at 581.681 kb on + strand, within Echvi_0518 at 581.681 kb on + strand, within Echvi_0518 at 581.974 kb on + strand, within Echvi_0518 at 582.045 kb on - strand, within Echvi_0518 at 582.045 kb on - strand, within Echvi_0518 at 582.095 kb on - strand, within Echvi_0518 at 582.118 kb on + strand, within Echvi_0518 at 582.123 kb on - strand, within Echvi_0518 at 582.123 kb on - strand, within Echvi_0518 at 582.161 kb on - strand, within Echvi_0518 at 582.212 kb on - strand, within Echvi_0518 at 582.241 kb on - strand, within Echvi_0518 at 582.241 kb on - strand at 582.244 kb on + strand, within Echvi_0518 at 582.255 kb on + strand, within Echvi_0518 at 582.255 kb on + strand, within Echvi_0518 at 582.284 kb on + strand, within Echvi_0518 at 582.284 kb on + strand, within Echvi_0518 at 582.318 kb on + strand, within Echvi_0518 at 582.319 kb on - strand, within Echvi_0518 at 582.320 kb on + strand, within Echvi_0518 at 582.320 kb on + strand, within Echvi_0518 at 582.395 kb on - strand, within Echvi_0518 at 582.400 kb on + strand, within Echvi_0518 at 582.402 kb on + strand, within Echvi_0518 at 582.402 kb on + strand, within Echvi_0518 at 582.402 kb on + strand, within Echvi_0518 at 582.403 kb on - strand, within Echvi_0518 at 582.403 kb on - strand, within Echvi_0518 at 582.403 kb on - strand, within Echvi_0518 at 582.446 kb on - strand, within Echvi_0518 at 582.451 kb on + strand, within Echvi_0518 at 582.452 kb on - strand, within Echvi_0518 at 582.483 kb on + strand, within Echvi_0518 at 582.483 kb on + strand, within Echvi_0518 at 582.483 kb on + strand, within Echvi_0518 at 582.484 kb on - strand, within Echvi_0518 at 582.484 kb on - strand, within Echvi_0518 at 582.487 kb on + strand, within Echvi_0518 at 582.561 kb on - strand, within Echvi_0518 at 582.642 kb on - strand, within Echvi_0518 at 582.718 kb on + strand, within Echvi_0518 at 582.788 kb on - strand, within Echvi_0518 at 582.788 kb on - strand, within Echvi_0518 at 582.878 kb on - strand, within Echvi_0518 at 582.897 kb on + strand, within Echvi_0518 at 582.923 kb on + strand, within Echvi_0518 at 582.923 kb on + strand, within Echvi_0518 at 582.924 kb on - strand, within Echvi_0518 at 582.924 kb on - strand, within Echvi_0518 at 582.957 kb on + strand, within Echvi_0518 at 582.957 kb on + strand, within Echvi_0518 at 582.958 kb on - strand, within Echvi_0518 at 582.994 kb on + strand, within Echvi_0518 at 582.995 kb on - strand, within Echvi_0518 at 582.995 kb on - strand, within Echvi_0518 at 582.995 kb on - strand, within Echvi_0518 at 583.098 kb on + strand, within Echvi_0518 at 583.099 kb on - strand, within Echvi_0518 at 583.144 kb on + strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.146 kb on + strand, within Echvi_0518 at 583.146 kb on + strand, within Echvi_0518 at 583.146 kb on + strand, within Echvi_0518 at 583.147 kb on - strand, within Echvi_0518 at 583.147 kb on - strand, within Echvi_0518 at 583.188 kb on + strand, within Echvi_0518 at 583.188 kb on + strand, within Echvi_0518 at 583.189 kb on - strand, within Echvi_0518 at 583.212 kb on + strand, within Echvi_0518 at 583.212 kb on + strand, within Echvi_0518 at 583.213 kb on - strand, within Echvi_0518 at 583.281 kb on - strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.337 kb on - strand at 583.338 kb on + strand at 583.339 kb on - strand at 583.388 kb on + strand at 583.412 kb on + strand at 583.501 kb on - strand at 583.618 kb on + strand at 583.618 kb on + strand at 583.618 kb on + strand at 583.622 kb on + strand at 583.622 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.641 kb on - strand at 583.641 kb on - strand at 583.727 kb on + strand, within Echvi_0519 at 583.738 kb on + strand, within Echvi_0519 at 583.738 kb on + strand, within Echvi_0519 at 583.790 kb on + strand, within Echvi_0519 at 583.791 kb on - strand, within Echvi_0519 at 583.791 kb on - strand, within Echvi_0519 at 583.791 kb on - strand, within Echvi_0519 at 583.920 kb on + strand, within Echvi_0519 at 583.991 kb on - strand, within Echvi_0519 at 584.138 kb on - strand, within Echvi_0519 at 584.140 kb on - strand, within Echvi_0519 at 584.160 kb on + strand, within Echvi_0519 at 584.160 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.179 kb on - strand, within Echvi_0519 at 584.179 kb on - strand, within Echvi_0519 at 584.325 kb on + strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand at 584.326 kb on - strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.328 kb on - strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.330 kb on - strand, within Echvi_0519 at 584.337 kb on + strand, within Echvi_0519 at 584.349 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.378 kb on + strand, within Echvi_0519 at 584.422 kb on + strand, within Echvi_0519 at 584.422 kb on + strand, within Echvi_0519 at 584.483 kb on + strand, within Echvi_0519 at 584.484 kb on - strand, within Echvi_0519
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 580,219 + Echvi_0517 0.57 -0.2 580,534 + Echvi_0517 0.74 -0.2 580,538 + Echvi_0517 0.74 +0.2 580,612 + Echvi_0517 0.78 -0.5 580,612 + Echvi_0517 0.78 +0.7 580,613 - Echvi_0517 0.78 -1.8 580,613 - Echvi_0517 0.78 -0.1 580,616 + Echvi_0517 0.78 -1.7 580,616 + Echvi_0517 0.78 +0.4 580,616 + Echvi_0517 0.78 +0.9 580,617 - Echvi_0517 0.78 -0.0 580,617 - Echvi_0517 0.78 +0.3 580,617 - Echvi_0517 0.78 +0.5 580,740 + Echvi_0517 0.84 -0.1 580,740 + Echvi_0517 0.84 +0.1 580,776 + Echvi_0517 0.86 -0.7 580,777 - Echvi_0517 0.86 +0.3 580,777 - Echvi_0517 0.86 -0.8 580,833 - Echvi_0517 0.89 -2.6 580,874 + -0.6 580,874 + +2.0 580,874 + +0.5 580,875 - +1.5 580,875 - +0.6 580,898 - -1.1 581,009 - -0.8 581,009 - +0.2 581,031 - -0.0 581,107 + -1.6 581,142 + +0.4 581,142 + +0.2 581,400 + Echvi_0518 0.11 -1.7 581,458 + Echvi_0518 0.13 -2.2 581,637 - Echvi_0518 0.21 +3.3 581,643 + Echvi_0518 0.21 +0.7 581,643 + Echvi_0518 0.21 -1.6 581,644 - Echvi_0518 0.21 -0.2 581,681 + Echvi_0518 0.23 +0.2 581,681 + Echvi_0518 0.23 +0.1 581,974 + Echvi_0518 0.35 +0.6 582,045 - Echvi_0518 0.38 +0.2 582,045 - Echvi_0518 0.38 -0.3 582,095 - Echvi_0518 0.41 -0.2 582,118 + Echvi_0518 0.41 -0.9 582,123 - Echvi_0518 0.42 -1.8 582,123 - Echvi_0518 0.42 +0.2 582,161 - Echvi_0518 0.43 -1.3 582,212 - Echvi_0518 0.45 -2.5 582,241 - Echvi_0518 0.47 -0.7 582,241 - +1.7 582,244 + Echvi_0518 0.47 +2.1 582,255 + Echvi_0518 0.47 +1.5 582,255 + Echvi_0518 0.47 -0.2 582,284 + Echvi_0518 0.49 +1.5 582,284 + Echvi_0518 0.49 -0.6 582,318 + Echvi_0518 0.50 +0.2 582,319 - Echvi_0518 0.50 -0.8 582,320 + Echvi_0518 0.50 -0.2 582,320 + Echvi_0518 0.50 +0.8 582,395 - Echvi_0518 0.53 -1.6 582,400 + Echvi_0518 0.53 -1.8 582,402 + Echvi_0518 0.54 +0.6 582,402 + Echvi_0518 0.54 +3.3 582,402 + Echvi_0518 0.54 +0.3 582,403 - Echvi_0518 0.54 -1.3 582,403 - Echvi_0518 0.54 -0.3 582,403 - Echvi_0518 0.54 -1.3 582,446 - Echvi_0518 0.55 -0.7 582,451 + Echvi_0518 0.56 +0.6 582,452 - Echvi_0518 0.56 -0.3 582,483 + Echvi_0518 0.57 -0.3 582,483 + Echvi_0518 0.57 -0.8 582,483 + Echvi_0518 0.57 -1.1 582,484 - Echvi_0518 0.57 -1.1 582,484 - Echvi_0518 0.57 -0.9 582,487 + Echvi_0518 0.57 -0.7 582,561 - Echvi_0518 0.60 -0.4 582,642 - Echvi_0518 0.64 +0.6 582,718 + Echvi_0518 0.67 -0.6 582,788 - Echvi_0518 0.70 +0.7 582,788 - Echvi_0518 0.70 +0.2 582,878 - Echvi_0518 0.74 -0.1 582,897 + Echvi_0518 0.75 -0.2 582,923 + Echvi_0518 0.76 +0.7 582,923 + Echvi_0518 0.76 -0.1 582,924 - Echvi_0518 0.76 +1.7 582,924 - Echvi_0518 0.76 -2.0 582,957 + Echvi_0518 0.77 -2.1 582,957 + Echvi_0518 0.77 +2.3 582,958 - Echvi_0518 0.77 +0.7 582,994 + Echvi_0518 0.79 -0.6 582,995 - Echvi_0518 0.79 -0.4 582,995 - Echvi_0518 0.79 -0.6 582,995 - Echvi_0518 0.79 -0.9 583,098 + Echvi_0518 0.83 -0.4 583,099 - Echvi_0518 0.83 +1.7 583,144 + Echvi_0518 0.85 +0.2 583,145 - Echvi_0518 0.85 -3.3 583,145 - Echvi_0518 0.85 +1.2 583,145 - Echvi_0518 0.85 -0.7 583,145 - Echvi_0518 0.85 +0.2 583,146 + Echvi_0518 0.85 +0.6 583,146 + Echvi_0518 0.85 -0.6 583,146 + Echvi_0518 0.85 -1.2 583,147 - Echvi_0518 0.85 -0.5 583,147 - Echvi_0518 0.85 -0.2 583,188 + Echvi_0518 0.87 -0.1 583,188 + Echvi_0518 0.87 +1.2 583,189 - Echvi_0518 0.87 -2.3 583,212 + Echvi_0518 0.88 -0.1 583,212 + Echvi_0518 0.88 -0.3 583,213 - Echvi_0518 0.88 -1.8 583,281 - -0.6 583,299 + +1.2 583,299 + -0.1 583,299 + -0.6 583,299 + -0.7 583,299 + +0.0 583,299 + -0.7 583,299 + +0.4 583,299 + +1.5 583,299 + +0.0 583,299 + +0.2 583,299 + -0.2 583,299 + +0.0 583,299 + -0.3 583,299 + -0.1 583,300 - -1.3 583,300 - -0.3 583,300 - +0.3 583,300 - -0.3 583,300 - +0.0 583,300 - -2.4 583,337 - -1.1 583,338 + -0.2 583,339 - -1.4 583,388 + +1.7 583,412 + +1.5 583,501 - -1.4 583,618 + -1.1 583,618 + -0.3 583,618 + +0.4 583,622 + -0.2 583,622 + +1.2 583,640 + -0.1 583,640 + -0.3 583,640 + +0.5 583,640 + -1.0 583,640 + +1.7 583,641 - +0.7 583,641 - +0.7 583,727 + Echvi_0519 0.15 -0.8 583,738 + Echvi_0519 0.16 +0.5 583,738 + Echvi_0519 0.16 -0.3 583,790 + Echvi_0519 0.20 +0.2 583,791 - Echvi_0519 0.20 -2.7 583,791 - Echvi_0519 0.20 +0.2 583,791 - Echvi_0519 0.20 -0.6 583,920 + Echvi_0519 0.28 +1.3 583,991 - Echvi_0519 0.33 -1.6 584,138 - Echvi_0519 0.43 -0.3 584,140 - Echvi_0519 0.43 -0.1 584,160 + Echvi_0519 0.44 +0.1 584,160 + Echvi_0519 0.44 +0.0 584,178 + Echvi_0519 0.46 +1.7 584,178 + Echvi_0519 0.46 +0.5 584,178 + Echvi_0519 0.46 +0.2 584,178 + Echvi_0519 0.46 -1.3 584,178 + Echvi_0519 0.46 +0.9 584,179 - Echvi_0519 0.46 +1.3 584,179 - Echvi_0519 0.46 +0.9 584,325 + Echvi_0519 0.56 +1.2 584,326 - Echvi_0519 0.56 -0.6 584,326 - Echvi_0519 0.56 +0.4 584,326 - Echvi_0519 0.56 -1.4 584,326 - +4.3 584,326 - Echvi_0519 0.56 +1.7 584,327 + Echvi_0519 0.56 +0.2 584,327 + Echvi_0519 0.56 +0.6 584,327 + Echvi_0519 0.56 -0.4 584,327 + Echvi_0519 0.56 +2.3 584,327 + Echvi_0519 0.56 -1.6 584,328 - Echvi_0519 0.56 -0.5 584,329 + Echvi_0519 0.56 +0.5 584,329 + Echvi_0519 0.56 -0.3 584,329 + Echvi_0519 0.56 +0.3 584,330 - Echvi_0519 0.56 -0.6 584,337 + Echvi_0519 0.56 -1.8 584,349 + Echvi_0519 0.57 -0.8 584,352 + Echvi_0519 0.57 -1.7 584,352 + Echvi_0519 0.57 +1.6 584,352 + Echvi_0519 0.57 -1.4 584,353 - Echvi_0519 0.57 -0.6 584,353 - Echvi_0519 0.57 -0.1 584,353 - Echvi_0519 0.57 -1.1 584,378 + Echvi_0519 0.59 -1.0 584,422 + Echvi_0519 0.62 +0.4 584,422 + Echvi_0519 0.62 -0.1 584,483 + Echvi_0519 0.66 +0.4 584,484 - Echvi_0519 0.66 +0.1
Or see this region's nucleotide sequence