Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0470 and Echvi_0471 overlap by 4 nucleotides Echvi_0471 and Echvi_0472 are separated by 331 nucleotides Echvi_0472 and Echvi_0473 are separated by 34 nucleotides
Echvi_0470: Echvi_0470 - beta-ketoacyl-acyl-carrier-protein synthase II, at 518,337 to 519,581
_0470
Echvi_0471: Echvi_0471 - Bacterial regulatory proteins, tetR family., at 519,578 to 520,138
_0471
Echvi_0472: Echvi_0472 - hypothetical protein, at 520,470 to 520,688
_0472
Echvi_0473: Echvi_0473 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 520,723 to 521,754
_0473
Position (kb) 519
520
521 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 518.604 kb on - strand, within Echvi_0470 at 518.622 kb on - strand, within Echvi_0470 at 518.669 kb on + strand, within Echvi_0470 at 518.670 kb on - strand, within Echvi_0470 at 518.678 kb on + strand, within Echvi_0470 at 518.678 kb on + strand, within Echvi_0470 at 518.685 kb on - strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.687 kb on - strand, within Echvi_0470 at 518.743 kb on + strand, within Echvi_0470 at 518.743 kb on + strand, within Echvi_0470 at 518.744 kb on - strand, within Echvi_0470 at 518.744 kb on - strand, within Echvi_0470 at 518.744 kb on - strand, within Echvi_0470 at 518.782 kb on + strand, within Echvi_0470 at 518.811 kb on + strand, within Echvi_0470 at 519.024 kb on - strand, within Echvi_0470 at 519.054 kb on - strand, within Echvi_0470 at 519.134 kb on - strand, within Echvi_0470 at 519.206 kb on + strand, within Echvi_0470 at 519.206 kb on + strand, within Echvi_0470 at 519.207 kb on - strand, within Echvi_0470 at 519.223 kb on + strand, within Echvi_0470 at 519.224 kb on - strand, within Echvi_0470 at 519.359 kb on - strand, within Echvi_0470 at 519.359 kb on - strand, within Echvi_0470 at 519.359 kb on - strand, within Echvi_0470 at 519.426 kb on + strand, within Echvi_0470 at 519.504 kb on + strand at 519.525 kb on + strand at 519.525 kb on + strand at 519.525 kb on + strand at 519.525 kb on + strand at 519.570 kb on + strand at 519.581 kb on + strand at 519.582 kb on - strand at 519.589 kb on + strand at 519.596 kb on + strand at 519.608 kb on - strand at 519.725 kb on - strand, within Echvi_0471 at 519.887 kb on - strand, within Echvi_0471 at 519.888 kb on + strand, within Echvi_0471 at 519.888 kb on + strand, within Echvi_0471 at 519.888 kb on + strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.889 kb on - strand, within Echvi_0471 at 519.903 kb on - strand, within Echvi_0471 at 519.909 kb on - strand, within Echvi_0471 at 519.909 kb on - strand, within Echvi_0471 at 520.017 kb on + strand, within Echvi_0471 at 520.022 kb on + strand, within Echvi_0471 at 520.022 kb on + strand, within Echvi_0471 at 520.022 kb on + strand, within Echvi_0471 at 520.023 kb on - strand, within Echvi_0471 at 520.023 kb on - strand, within Echvi_0471 at 520.078 kb on + strand, within Echvi_0471 at 520.078 kb on + strand, within Echvi_0471 at 520.124 kb on - strand at 520.124 kb on - strand at 520.132 kb on + strand at 520.132 kb on + strand at 520.133 kb on - strand at 520.133 kb on - strand at 520.143 kb on + strand at 520.144 kb on - strand at 520.144 kb on - strand at 520.144 kb on - strand at 520.186 kb on + strand at 520.187 kb on - strand at 520.190 kb on + strand at 520.191 kb on - strand at 520.193 kb on - strand at 520.193 kb on - strand at 520.193 kb on - strand at 520.243 kb on + strand at 520.340 kb on + strand at 520.340 kb on + strand at 520.445 kb on + strand at 520.445 kb on + strand at 520.445 kb on + strand at 520.446 kb on - strand at 520.446 kb on - strand at 520.480 kb on + strand at 520.488 kb on + strand at 520.497 kb on + strand, within Echvi_0472 at 520.499 kb on + strand, within Echvi_0472 at 520.616 kb on - strand, within Echvi_0472 at 520.677 kb on - strand at 520.730 kb on - strand at 520.730 kb on - strand at 520.735 kb on + strand at 520.770 kb on - strand at 520.770 kb on - strand at 520.833 kb on - strand, within Echvi_0473 at 520.962 kb on + strand, within Echvi_0473 at 521.030 kb on + strand, within Echvi_0473 at 521.030 kb on + strand, within Echvi_0473 at 521.030 kb on + strand, within Echvi_0473 at 521.031 kb on - strand, within Echvi_0473 at 521.111 kb on - strand, within Echvi_0473 at 521.123 kb on + strand, within Echvi_0473 at 521.124 kb on - strand, within Echvi_0473
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 518,604 - Echvi_0470 0.21 -0.5 518,622 - Echvi_0470 0.23 -0.6 518,669 + Echvi_0470 0.27 -0.0 518,670 - Echvi_0470 0.27 +0.7 518,678 + Echvi_0470 0.27 +0.4 518,678 + Echvi_0470 0.27 -0.9 518,685 - Echvi_0470 0.28 -0.6 518,686 + Echvi_0470 0.28 +0.5 518,686 + Echvi_0470 0.28 -2.7 518,686 + Echvi_0470 0.28 +0.1 518,686 + Echvi_0470 0.28 -0.8 518,686 + Echvi_0470 0.28 -1.3 518,687 - Echvi_0470 0.28 -0.3 518,743 + Echvi_0470 0.33 -1.6 518,743 + Echvi_0470 0.33 +0.8 518,744 - Echvi_0470 0.33 +0.4 518,744 - Echvi_0470 0.33 +1.3 518,744 - Echvi_0470 0.33 -0.0 518,782 + Echvi_0470 0.36 +1.0 518,811 + Echvi_0470 0.38 -2.1 519,024 - Echvi_0470 0.55 +0.6 519,054 - Echvi_0470 0.58 -0.9 519,134 - Echvi_0470 0.64 +1.1 519,206 + Echvi_0470 0.70 +0.1 519,206 + Echvi_0470 0.70 -0.9 519,207 - Echvi_0470 0.70 -1.0 519,223 + Echvi_0470 0.71 +0.5 519,224 - Echvi_0470 0.71 -0.2 519,359 - Echvi_0470 0.82 +1.0 519,359 - Echvi_0470 0.82 -0.5 519,359 - Echvi_0470 0.82 +0.1 519,426 + Echvi_0470 0.87 +0.3 519,504 + -1.3 519,525 + -0.6 519,525 + -0.9 519,525 + -0.2 519,525 + +0.0 519,570 + -2.9 519,581 + +0.7 519,582 - +0.3 519,589 + -0.9 519,596 + -1.1 519,608 - -0.9 519,725 - Echvi_0471 0.26 +1.0 519,887 - Echvi_0471 0.55 -0.4 519,888 + Echvi_0471 0.55 +0.5 519,888 + Echvi_0471 0.55 +1.1 519,888 + Echvi_0471 0.55 -0.2 519,889 - Echvi_0471 0.55 -0.5 519,889 - Echvi_0471 0.55 +0.5 519,889 - Echvi_0471 0.55 +0.3 519,889 - Echvi_0471 0.55 +1.0 519,903 - Echvi_0471 0.58 +1.2 519,909 - Echvi_0471 0.59 +0.7 519,909 - Echvi_0471 0.59 -0.3 520,017 + Echvi_0471 0.78 -0.4 520,022 + Echvi_0471 0.79 +0.1 520,022 + Echvi_0471 0.79 +0.8 520,022 + Echvi_0471 0.79 +1.7 520,023 - Echvi_0471 0.79 +1.9 520,023 - Echvi_0471 0.79 -0.4 520,078 + Echvi_0471 0.89 +0.4 520,078 + Echvi_0471 0.89 -0.4 520,124 - -0.1 520,124 - -0.3 520,132 + +1.3 520,132 + -0.2 520,133 - +0.6 520,133 - -1.4 520,143 + -0.4 520,144 - +0.6 520,144 - +0.1 520,144 - +0.1 520,186 + -0.3 520,187 - +1.7 520,190 + -0.3 520,191 - +0.5 520,193 - -0.0 520,193 - +1.0 520,193 - +0.3 520,243 + +0.7 520,340 + +0.0 520,340 + +2.8 520,445 + +0.4 520,445 + -1.9 520,445 + -0.2 520,446 - -0.3 520,446 - -0.7 520,480 + +1.0 520,488 + +0.7 520,497 + Echvi_0472 0.12 +0.4 520,499 + Echvi_0472 0.13 +0.7 520,616 - Echvi_0472 0.67 -1.1 520,677 - -0.5 520,730 - -0.1 520,730 - +0.0 520,735 + -1.1 520,770 - -0.1 520,770 - +3.7 520,833 - Echvi_0473 0.11 +0.7 520,962 + Echvi_0473 0.23 -1.6 521,030 + Echvi_0473 0.30 +0.1 521,030 + Echvi_0473 0.30 -1.3 521,030 + Echvi_0473 0.30 +1.3 521,031 - Echvi_0473 0.30 -1.6 521,111 - Echvi_0473 0.38 -1.1 521,123 + Echvi_0473 0.39 -0.4 521,124 - Echvi_0473 0.39 +0.2
Or see this region's nucleotide sequence