Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0374

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0372 and Echvi_0373 are separated by 3 nucleotidesEchvi_0373 and Echvi_0374 are separated by 12 nucleotidesEchvi_0374 and Echvi_0375 are separated by 209 nucleotidesEchvi_0375 and Echvi_0376 are separated by 300 nucleotides Echvi_0372: Echvi_0372 - conserved hypothetical protein, YceG family, at 400,296 to 401,339 _0372 Echvi_0373: Echvi_0373 - acyl-CoA thioester hydrolase, YbgC/YbaW family, at 401,343 to 401,747 _0373 Echvi_0374: Echvi_0374 - Predicted membrane protein, at 401,760 to 402,704 _0374 Echvi_0375: Echvi_0375 - tRNA, at 402,914 to 402,998 _0375 Echvi_0376: Echvi_0376 - hypothetical protein, at 403,299 to 403,862 _0376 Position (kb) 401 402 403Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 400.819 kb on - strand, within Echvi_0372at 400.829 kb on + strand, within Echvi_0372at 400.857 kb on + strandat 401.004 kb on + strand, within Echvi_0372at 401.025 kb on - strand, within Echvi_0372at 401.121 kb on + strand, within Echvi_0372at 401.159 kb on + strand, within Echvi_0372at 401.163 kb on - strand, within Echvi_0372at 401.163 kb on - strand, within Echvi_0372at 401.217 kb on + strand, within Echvi_0372at 401.218 kb on - strand, within Echvi_0372at 401.218 kb on - strand, within Echvi_0372at 401.221 kb on + strand, within Echvi_0372at 401.223 kb on + strand, within Echvi_0372at 401.223 kb on + strand, within Echvi_0372at 401.223 kb on + strand, within Echvi_0372at 401.223 kb on + strand, within Echvi_0372at 401.223 kb on + strand, within Echvi_0372at 401.223 kb on + strand, within Echvi_0372at 401.224 kb on - strand, within Echvi_0372at 401.305 kb on - strandat 401.334 kb on + strandat 401.337 kb on + strandat 401.342 kb on + strandat 401.342 kb on + strandat 401.343 kb on - strandat 401.343 kb on - strandat 401.349 kb on - strandat 401.349 kb on - strandat 401.365 kb on + strandat 401.365 kb on + strandat 401.366 kb on - strandat 401.372 kb on - strandat 401.400 kb on + strand, within Echvi_0373at 401.400 kb on + strand, within Echvi_0373at 401.400 kb on + strand, within Echvi_0373at 401.401 kb on - strand, within Echvi_0373at 401.406 kb on + strand, within Echvi_0373at 401.406 kb on + strand, within Echvi_0373at 401.406 kb on + strand, within Echvi_0373at 401.407 kb on - strand, within Echvi_0373at 401.409 kb on + strand, within Echvi_0373at 401.410 kb on - strand, within Echvi_0373at 401.410 kb on - strand, within Echvi_0373at 401.418 kb on + strand, within Echvi_0373at 401.418 kb on + strand, within Echvi_0373at 401.419 kb on - strand, within Echvi_0373at 401.427 kb on + strand, within Echvi_0373at 401.427 kb on + strand, within Echvi_0373at 401.428 kb on - strand, within Echvi_0373at 401.512 kb on + strand, within Echvi_0373at 401.512 kb on + strand, within Echvi_0373at 401.512 kb on + strand, within Echvi_0373at 401.515 kb on + strand, within Echvi_0373at 401.516 kb on - strand, within Echvi_0373at 401.516 kb on - strand, within Echvi_0373at 401.532 kb on + strand, within Echvi_0373at 401.560 kb on + strand, within Echvi_0373at 401.560 kb on + strand, within Echvi_0373at 401.560 kb on + strand, within Echvi_0373at 401.561 kb on - strand, within Echvi_0373at 401.561 kb on - strand, within Echvi_0373at 401.722 kb on + strandat 401.740 kb on - strandat 401.740 kb on - strandat 401.785 kb on + strandat 401.806 kb on - strandat 401.857 kb on - strand, within Echvi_0374at 401.930 kb on + strand, within Echvi_0374at 401.988 kb on - strand, within Echvi_0374at 402.038 kb on - strand, within Echvi_0374at 402.145 kb on + strand, within Echvi_0374at 402.146 kb on - strand, within Echvi_0374at 402.146 kb on - strand, within Echvi_0374at 402.147 kb on + strand, within Echvi_0374at 402.147 kb on + strand, within Echvi_0374at 402.148 kb on - strand, within Echvi_0374at 402.180 kb on - strand, within Echvi_0374at 402.199 kb on - strand, within Echvi_0374at 402.289 kb on + strand, within Echvi_0374at 402.290 kb on - strand, within Echvi_0374at 402.336 kb on + strand, within Echvi_0374at 402.336 kb on + strand, within Echvi_0374at 402.361 kb on - strand, within Echvi_0374at 402.361 kb on - strand, within Echvi_0374at 402.361 kb on - strand, within Echvi_0374at 402.361 kb on - strand, within Echvi_0374at 402.363 kb on - strand, within Echvi_0374at 402.369 kb on + strand, within Echvi_0374at 402.401 kb on - strand, within Echvi_0374at 402.435 kb on - strand, within Echvi_0374at 402.435 kb on - strand, within Echvi_0374at 402.526 kb on - strand, within Echvi_0374at 402.526 kb on - strand, within Echvi_0374at 402.587 kb on + strand, within Echvi_0374at 402.587 kb on + strand, within Echvi_0374at 402.658 kb on + strandat 402.658 kb on + strandat 402.658 kb on + strandat 402.847 kb on + strandat 403.129 kb on - strandat 403.131 kb on + strandat 403.132 kb on - strandat 403.148 kb on - strandat 403.184 kb on + strandat 403.243 kb on + strandat 403.243 kb on + strandat 403.276 kb on + strandat 403.277 kb on - strandat 403.350 kb on - strandat 403.350 kb on - strandat 403.350 kb on - strandat 403.379 kb on + strand, within Echvi_0376at 403.380 kb on - strand, within Echvi_0376at 403.380 kb on - strand, within Echvi_0376at 403.391 kb on - strand, within Echvi_0376at 403.391 kb on - strand, within Echvi_0376at 403.403 kb on + strand, within Echvi_0376at 403.405 kb on + strand, within Echvi_0376at 403.405 kb on + strand, within Echvi_0376at 403.405 kb on + strand, within Echvi_0376at 403.406 kb on - strand, within Echvi_0376at 403.406 kb on - strand, within Echvi_0376at 403.406 kb on - strand, within Echvi_0376at 403.409 kb on + strand, within Echvi_0376at 403.412 kb on + strand, within Echvi_0376at 403.412 kb on + strand, within Echvi_0376at 403.413 kb on - strand, within Echvi_0376at 403.448 kb on + strand, within Echvi_0376at 403.448 kb on + strand, within Echvi_0376at 403.449 kb on - strand, within Echvi_0376at 403.491 kb on + strand, within Echvi_0376at 403.492 kb on - strand, within Echvi_0376at 403.521 kb on - strand, within Echvi_0376at 403.526 kb on - strand, within Echvi_0376at 403.526 kb on - strand, within Echvi_0376at 403.526 kb on - strand, within Echvi_0376at 403.526 kb on - strand, within Echvi_0376at 403.534 kb on - strand, within Echvi_0376at 403.553 kb on - strand, within Echvi_0376at 403.591 kb on + strand, within Echvi_0376at 403.653 kb on + strand, within Echvi_0376at 403.666 kb on + strand, within Echvi_0376at 403.671 kb on - strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.675 kb on - strandat 403.676 kb on + strand, within Echvi_0376at 403.676 kb on + strand, within Echvi_0376at 403.679 kb on + strand, within Echvi_0376

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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400,819 - Echvi_0372 0.50 +1.3
400,829 + Echvi_0372 0.51 -1.1
400,857 + -0.3
401,004 + Echvi_0372 0.68 +0.7
401,025 - Echvi_0372 0.70 -0.8
401,121 + Echvi_0372 0.79 -0.8
401,159 + Echvi_0372 0.83 -1.2
401,163 - Echvi_0372 0.83 -0.9
401,163 - Echvi_0372 0.83 -1.6
401,217 + Echvi_0372 0.88 +0.1
401,218 - Echvi_0372 0.88 +0.0
401,218 - Echvi_0372 0.88 +0.7
401,221 + Echvi_0372 0.89 -0.0
401,223 + Echvi_0372 0.89 -0.1
401,223 + Echvi_0372 0.89 -0.3
401,223 + Echvi_0372 0.89 -0.3
401,223 + Echvi_0372 0.89 +0.9
401,223 + Echvi_0372 0.89 +1.4
401,223 + Echvi_0372 0.89 +0.5
401,224 - Echvi_0372 0.89 -0.7
401,305 - -0.9
401,334 + +0.7
401,337 + -1.1
401,342 + +0.1
401,342 + -1.5
401,343 - +1.1
401,343 - -1.3
401,349 - +0.4
401,349 - -1.9
401,365 + +0.9
401,365 + +1.0
401,366 - -2.0
401,372 - +0.1
401,400 + Echvi_0373 0.14 -0.6
401,400 + Echvi_0373 0.14 -0.3
401,400 + Echvi_0373 0.14 -0.0
401,401 - Echvi_0373 0.14 -0.9
401,406 + Echvi_0373 0.16 -0.2
401,406 + Echvi_0373 0.16 -0.0
401,406 + Echvi_0373 0.16 -0.9
401,407 - Echvi_0373 0.16 +0.6
401,409 + Echvi_0373 0.16 -1.5
401,410 - Echvi_0373 0.17 +1.6
401,410 - Echvi_0373 0.17 +0.1
401,418 + Echvi_0373 0.19 +0.7
401,418 + Echvi_0373 0.19 -0.0
401,419 - Echvi_0373 0.19 -0.9
401,427 + Echvi_0373 0.21 +0.1
401,427 + Echvi_0373 0.21 +0.4
401,428 - Echvi_0373 0.21 -0.0
401,512 + Echvi_0373 0.42 +0.3
401,512 + Echvi_0373 0.42 -0.4
401,512 + Echvi_0373 0.42 +3.1
401,515 + Echvi_0373 0.42 +0.1
401,516 - Echvi_0373 0.43 +1.2
401,516 - Echvi_0373 0.43 +0.8
401,532 + Echvi_0373 0.47 +0.3
401,560 + Echvi_0373 0.54 +0.9
401,560 + Echvi_0373 0.54 -1.6
401,560 + Echvi_0373 0.54 -1.0
401,561 - Echvi_0373 0.54 +1.6
401,561 - Echvi_0373 0.54 -1.4
401,722 + -0.5
401,740 - -0.1
401,740 - -2.8
401,785 + -1.7
401,806 - -1.0
401,857 - Echvi_0374 0.10 -2.0
401,930 + Echvi_0374 0.18 -2.6
401,988 - Echvi_0374 0.24 -4.0
402,038 - Echvi_0374 0.29 -1.5
402,145 + Echvi_0374 0.41 -2.3
402,146 - Echvi_0374 0.41 -2.1
402,146 - Echvi_0374 0.41 -1.9
402,147 + Echvi_0374 0.41 -0.3
402,147 + Echvi_0374 0.41 -2.2
402,148 - Echvi_0374 0.41 +0.7
402,180 - Echvi_0374 0.44 -1.8
402,199 - Echvi_0374 0.46 -2.6
402,289 + Echvi_0374 0.56 -1.4
402,290 - Echvi_0374 0.56 -1.5
402,336 + Echvi_0374 0.61 -1.0
402,336 + Echvi_0374 0.61 -1.7
402,361 - Echvi_0374 0.64 +0.6
402,361 - Echvi_0374 0.64 -1.6
402,361 - Echvi_0374 0.64 -1.8
402,361 - Echvi_0374 0.64 -1.6
402,363 - Echvi_0374 0.64 -2.3
402,369 + Echvi_0374 0.64 -0.9
402,401 - Echvi_0374 0.68 -1.7
402,435 - Echvi_0374 0.71 -0.3
402,435 - Echvi_0374 0.71 -1.0
402,526 - Echvi_0374 0.81 -2.5
402,526 - Echvi_0374 0.81 -0.4
402,587 + Echvi_0374 0.88 -1.9
402,587 + Echvi_0374 0.88 -1.1
402,658 + -0.7
402,658 + -1.7
402,658 + -1.6
402,847 + +0.6
403,129 - +0.5
403,131 + +0.5
403,132 - +1.5
403,148 - -2.4
403,184 + -0.6
403,243 + +0.7
403,243 + +2.0
403,276 + +1.2
403,277 - -2.0
403,350 - +0.7
403,350 - -1.1
403,350 - -0.5
403,379 + Echvi_0376 0.14 -0.5
403,380 - Echvi_0376 0.14 -2.2
403,380 - Echvi_0376 0.14 -0.6
403,391 - Echvi_0376 0.16 -0.1
403,391 - Echvi_0376 0.16 -0.3
403,403 + Echvi_0376 0.18 -0.7
403,405 + Echvi_0376 0.19 -0.8
403,405 + Echvi_0376 0.19 +0.3
403,405 + Echvi_0376 0.19 +1.6
403,406 - Echvi_0376 0.19 -0.1
403,406 - Echvi_0376 0.19 +0.8
403,406 - Echvi_0376 0.19 +0.4
403,409 + Echvi_0376 0.20 -0.7
403,412 + Echvi_0376 0.20 -0.0
403,412 + Echvi_0376 0.20 -0.6
403,413 - Echvi_0376 0.20 -0.6
403,448 + Echvi_0376 0.26 +0.6
403,448 + Echvi_0376 0.26 -0.9
403,449 - Echvi_0376 0.27 +0.1
403,491 + Echvi_0376 0.34 +1.3
403,492 - Echvi_0376 0.34 +0.4
403,521 - Echvi_0376 0.39 +0.7
403,526 - Echvi_0376 0.40 +0.1
403,526 - Echvi_0376 0.40 +2.5
403,526 - Echvi_0376 0.40 -0.7
403,526 - Echvi_0376 0.40 +0.8
403,534 - Echvi_0376 0.42 -0.1
403,553 - Echvi_0376 0.45 +1.1
403,591 + Echvi_0376 0.52 +0.2
403,653 + Echvi_0376 0.63 -0.7
403,666 + Echvi_0376 0.65 -0.0
403,671 - Echvi_0376 0.66 +0.5
403,674 + Echvi_0376 0.66 +0.9
403,674 + Echvi_0376 0.66 +0.7
403,674 + Echvi_0376 0.66 -1.1
403,674 + Echvi_0376 0.66 -0.0
403,674 + Echvi_0376 0.66 +0.1
403,675 - +0.7
403,676 + Echvi_0376 0.67 +0.5
403,676 + Echvi_0376 0.67 +0.4
403,679 + Echvi_0376 0.67 +0.2

Or see this region's nucleotide sequence