Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0206

Experiment: a-Cyclodextrin (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0204 and Echvi_0205 are separated by 9 nucleotidesEchvi_0205 and Echvi_0206 are separated by 73 nucleotidesEchvi_0206 and Echvi_0207 are separated by 906 nucleotides Echvi_0204: Echvi_0204 - N-acetyl-beta-hexosaminidase, at 222,220 to 224,154 _0204 Echvi_0205: Echvi_0205 - Metal-dependent hydrolase, at 224,164 to 224,958 _0205 Echvi_0206: Echvi_0206 - Transcriptional regulators of sugar metabolism, at 225,032 to 225,793 _0206 Echvi_0207: Echvi_0207 - Transposase DDE domain., at 226,700 to 227,596 _0207 Position (kb) 225 226Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 224.032 kb on + strandat 224.087 kb on + strandat 224.088 kb on - strandat 224.088 kb on - strandat 224.092 kb on + strandat 224.092 kb on + strandat 224.093 kb on - strandat 224.093 kb on - strandat 224.094 kb on + strandat 224.095 kb on - strandat 224.144 kb on + strandat 224.148 kb on + strandat 224.152 kb on + strandat 224.153 kb on - strandat 224.153 kb on - strandat 224.175 kb on - strandat 224.182 kb on - strandat 224.186 kb on + strandat 224.189 kb on + strandat 224.189 kb on + strandat 224.189 kb on + strandat 224.189 kb on + strandat 224.190 kb on - strandat 224.190 kb on - strandat 224.196 kb on - strandat 224.258 kb on - strand, within Echvi_0205at 224.306 kb on + strand, within Echvi_0205at 224.306 kb on + strand, within Echvi_0205at 224.307 kb on - strand, within Echvi_0205at 224.307 kb on - strand, within Echvi_0205at 224.377 kb on - strand, within Echvi_0205at 224.584 kb on + strand, within Echvi_0205at 224.585 kb on - strand, within Echvi_0205at 224.585 kb on - strand, within Echvi_0205at 224.585 kb on - strand, within Echvi_0205at 224.586 kb on + strand, within Echvi_0205at 224.587 kb on - strand, within Echvi_0205at 224.683 kb on + strand, within Echvi_0205at 224.709 kb on - strand, within Echvi_0205at 224.727 kb on + strand, within Echvi_0205at 224.777 kb on + strand, within Echvi_0205at 224.777 kb on + strand, within Echvi_0205at 224.777 kb on + strand, within Echvi_0205at 224.777 kb on + strand, within Echvi_0205at 224.777 kb on + strand, within Echvi_0205at 224.777 kb on + strand, within Echvi_0205at 224.778 kb on - strand, within Echvi_0205at 224.778 kb on - strand, within Echvi_0205at 224.778 kb on - strand, within Echvi_0205at 224.778 kb on - strand, within Echvi_0205at 224.805 kb on + strand, within Echvi_0205at 224.806 kb on - strand, within Echvi_0205at 224.835 kb on + strand, within Echvi_0205at 224.851 kb on - strand, within Echvi_0205at 224.943 kb on - strandat 224.996 kb on + strandat 224.996 kb on + strandat 225.041 kb on + strandat 225.041 kb on + strandat 225.041 kb on + strandat 225.041 kb on + strandat 225.041 kb on + strandat 225.042 kb on - strandat 225.042 kb on - strandat 225.042 kb on - strandat 225.106 kb on + strandat 225.139 kb on + strand, within Echvi_0206at 225.153 kb on - strand, within Echvi_0206at 225.201 kb on - strand, within Echvi_0206at 225.202 kb on + strand, within Echvi_0206at 225.238 kb on + strand, within Echvi_0206at 225.238 kb on + strand, within Echvi_0206at 225.239 kb on - strand, within Echvi_0206at 225.240 kb on + strand, within Echvi_0206at 225.240 kb on + strand, within Echvi_0206at 225.240 kb on + strand, within Echvi_0206at 225.240 kb on + strand, within Echvi_0206at 225.298 kb on + strand, within Echvi_0206at 225.298 kb on + strand, within Echvi_0206at 225.298 kb on + strand, within Echvi_0206at 225.306 kb on - strand, within Echvi_0206at 225.399 kb on + strand, within Echvi_0206at 225.425 kb on + strand, within Echvi_0206at 225.508 kb on + strand, within Echvi_0206at 225.509 kb on - strand, within Echvi_0206at 225.509 kb on - strand, within Echvi_0206at 225.509 kb on - strand, within Echvi_0206at 225.511 kb on + strand, within Echvi_0206at 225.512 kb on - strand, within Echvi_0206at 225.557 kb on - strand, within Echvi_0206at 225.576 kb on - strand, within Echvi_0206at 225.608 kb on - strand, within Echvi_0206at 225.608 kb on - strand, within Echvi_0206at 225.608 kb on - strand, within Echvi_0206at 225.610 kb on + strand, within Echvi_0206at 225.619 kb on + strand, within Echvi_0206at 225.716 kb on + strand, within Echvi_0206at 225.716 kb on + strand, within Echvi_0206at 225.800 kb on - strandat 225.934 kb on + strandat 226.066 kb on + strandat 226.112 kb on + strandat 226.131 kb on + strandat 226.158 kb on - strandat 226.188 kb on - strandat 226.402 kb on + strandat 226.507 kb on + strandat 226.508 kb on - strandat 226.541 kb on + strandat 226.542 kb on - strandat 226.542 kb on - strandat 226.545 kb on + strandat 226.545 kb on + strandat 226.545 kb on + strandat 226.545 kb on + strandat 226.545 kb on + strandat 226.545 kb on + strandat 226.545 kb on + strandat 226.545 kb on + strandat 226.546 kb on - strandat 226.546 kb on - strandat 226.566 kb on - strandat 226.566 kb on - strandat 226.622 kb on + strandat 226.623 kb on - strandat 226.635 kb on - strandat 226.667 kb on - strandat 226.713 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
remove
224,032 + +1.0
224,087 + +0.5
224,088 - +0.3
224,088 - -0.6
224,092 + +1.3
224,092 + -0.1
224,093 - +0.3
224,093 - -0.6
224,094 + -0.4
224,095 - +0.0
224,144 + +3.2
224,148 + +0.7
224,152 + -2.1
224,153 - +0.0
224,153 - -0.3
224,175 - +1.0
224,182 - -1.9
224,186 + -0.7
224,189 + +0.6
224,189 + -0.2
224,189 + +1.7
224,189 + -1.3
224,190 - +0.3
224,190 - -0.3
224,196 - -2.7
224,258 - Echvi_0205 0.12 -0.6
224,306 + Echvi_0205 0.18 -1.4
224,306 + Echvi_0205 0.18 -1.6
224,307 - Echvi_0205 0.18 +0.2
224,307 - Echvi_0205 0.18 +0.2
224,377 - Echvi_0205 0.27 -0.3
224,584 + Echvi_0205 0.53 +1.4
224,585 - Echvi_0205 0.53 +0.9
224,585 - Echvi_0205 0.53 +1.2
224,585 - Echvi_0205 0.53 +0.9
224,586 + Echvi_0205 0.53 -0.7
224,587 - Echvi_0205 0.53 -1.2
224,683 + Echvi_0205 0.65 +0.4
224,709 - Echvi_0205 0.69 -1.7
224,727 + Echvi_0205 0.71 +0.4
224,777 + Echvi_0205 0.77 +0.5
224,777 + Echvi_0205 0.77 +0.7
224,777 + Echvi_0205 0.77 +1.3
224,777 + Echvi_0205 0.77 -0.9
224,777 + Echvi_0205 0.77 -0.6
224,777 + Echvi_0205 0.77 -0.2
224,778 - Echvi_0205 0.77 -0.9
224,778 - Echvi_0205 0.77 +0.2
224,778 - Echvi_0205 0.77 -0.3
224,778 - Echvi_0205 0.77 -0.4
224,805 + Echvi_0205 0.81 -0.6
224,806 - Echvi_0205 0.81 -1.0
224,835 + Echvi_0205 0.84 +0.9
224,851 - Echvi_0205 0.86 -0.6
224,943 - -0.1
224,996 + -0.8
224,996 + -1.1
225,041 + -1.4
225,041 + -0.5
225,041 + -1.4
225,041 + -0.2
225,041 + -2.3
225,042 - -0.9
225,042 - -1.1
225,042 - -1.7
225,106 + -2.1
225,139 + Echvi_0206 0.14 -1.7
225,153 - Echvi_0206 0.16 +2.2
225,201 - Echvi_0206 0.22 -1.4
225,202 + Echvi_0206 0.22 -1.0
225,238 + Echvi_0206 0.27 -1.6
225,238 + Echvi_0206 0.27 -1.1
225,239 - Echvi_0206 0.27 -2.8
225,240 + Echvi_0206 0.27 -1.3
225,240 + Echvi_0206 0.27 -1.3
225,240 + Echvi_0206 0.27 -0.4
225,240 + Echvi_0206 0.27 -1.2
225,298 + Echvi_0206 0.35 -0.3
225,298 + Echvi_0206 0.35 -0.6
225,298 + Echvi_0206 0.35 -0.8
225,306 - Echvi_0206 0.36 -0.7
225,399 + Echvi_0206 0.48 -0.3
225,425 + Echvi_0206 0.52 -0.4
225,508 + Echvi_0206 0.62 -1.1
225,509 - Echvi_0206 0.63 -0.8
225,509 - Echvi_0206 0.63 -0.4
225,509 - Echvi_0206 0.63 -1.0
225,511 + Echvi_0206 0.63 -1.2
225,512 - Echvi_0206 0.63 -1.0
225,557 - Echvi_0206 0.69 +1.7
225,576 - Echvi_0206 0.71 -0.8
225,608 - Echvi_0206 0.76 +0.4
225,608 - Echvi_0206 0.76 -3.2
225,608 - Echvi_0206 0.76 -1.0
225,610 + Echvi_0206 0.76 -2.6
225,619 + Echvi_0206 0.77 -1.8
225,716 + Echvi_0206 0.90 -0.7
225,716 + Echvi_0206 0.90 +0.5
225,800 - -0.8
225,934 + -1.4
226,066 + -1.6
226,112 + -0.4
226,131 + -0.9
226,158 - -0.1
226,188 - +0.5
226,402 + +1.1
226,507 + +0.5
226,508 - -0.3
226,541 + +0.4
226,542 - -1.6
226,542 - -0.3
226,545 + -0.8
226,545 + +1.2
226,545 + +0.4
226,545 + +0.3
226,545 + +0.3
226,545 + +0.5
226,545 + +0.1
226,545 + +0.2
226,546 - -0.9
226,546 - -0.9
226,566 - -0.9
226,566 - -1.1
226,622 + +0.5
226,623 - -0.8
226,635 - -0.9
226,667 - -0.4
226,713 - -0.3

Or see this region's nucleotide sequence