Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0160 and Echvi_0161 are separated by 196 nucleotides Echvi_0161 and Echvi_0162 are separated by 46 nucleotides
Echvi_0160: Echvi_0160 - Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 162,734 to 164,317
_0160
Echvi_0161: Echvi_0161 - Exopolyphosphatase, at 164,514 to 165,479
_0161
Echvi_0162: Echvi_0162 - Malate/L-lactate dehydrogenases, at 165,526 to 166,602
_0162
Position (kb) 164
165
166 Strain fitness (log2 ratio) -2
-1
0
1
2 at 163.548 kb on + strand, within Echvi_0160 at 163.548 kb on + strand, within Echvi_0160 at 163.549 kb on - strand, within Echvi_0160 at 163.549 kb on - strand, within Echvi_0160 at 163.558 kb on + strand, within Echvi_0160 at 163.627 kb on + strand, within Echvi_0160 at 163.627 kb on + strand, within Echvi_0160 at 163.711 kb on + strand, within Echvi_0160 at 163.712 kb on - strand, within Echvi_0160 at 163.713 kb on + strand, within Echvi_0160 at 163.713 kb on + strand, within Echvi_0160 at 163.713 kb on + strand, within Echvi_0160 at 163.714 kb on - strand, within Echvi_0160 at 163.842 kb on - strand, within Echvi_0160 at 163.842 kb on - strand, within Echvi_0160 at 163.844 kb on - strand, within Echvi_0160 at 164.000 kb on - strand, within Echvi_0160 at 164.014 kb on - strand, within Echvi_0160 at 164.014 kb on - strand, within Echvi_0160 at 164.019 kb on + strand, within Echvi_0160 at 164.019 kb on + strand, within Echvi_0160 at 164.020 kb on - strand, within Echvi_0160 at 164.020 kb on - strand, within Echvi_0160 at 164.073 kb on + strand, within Echvi_0160 at 164.074 kb on - strand, within Echvi_0160 at 164.076 kb on + strand, within Echvi_0160 at 164.102 kb on - strand, within Echvi_0160 at 164.164 kb on + strand at 164.204 kb on - strand at 164.290 kb on + strand at 164.290 kb on + strand at 164.293 kb on - strand at 164.293 kb on - strand at 164.331 kb on + strand at 164.332 kb on - strand at 164.342 kb on + strand at 164.342 kb on + strand at 164.343 kb on - strand at 164.343 kb on - strand at 164.347 kb on + strand at 164.347 kb on + strand at 164.347 kb on + strand at 164.348 kb on - strand at 164.408 kb on + strand at 164.429 kb on + strand at 164.569 kb on + strand at 164.575 kb on + strand at 164.746 kb on - strand, within Echvi_0161 at 164.797 kb on + strand, within Echvi_0161 at 164.868 kb on + strand, within Echvi_0161 at 164.868 kb on + strand, within Echvi_0161 at 165.027 kb on + strand, within Echvi_0161 at 165.088 kb on + strand, within Echvi_0161 at 165.088 kb on + strand, within Echvi_0161 at 165.110 kb on + strand, within Echvi_0161 at 165.110 kb on + strand, within Echvi_0161 at 165.174 kb on + strand, within Echvi_0161 at 165.174 kb on + strand, within Echvi_0161 at 165.174 kb on + strand, within Echvi_0161 at 165.175 kb on - strand, within Echvi_0161 at 165.175 kb on - strand, within Echvi_0161 at 165.175 kb on - strand, within Echvi_0161 at 165.177 kb on + strand, within Echvi_0161 at 165.177 kb on + strand, within Echvi_0161 at 165.178 kb on - strand, within Echvi_0161 at 165.178 kb on - strand, within Echvi_0161 at 165.370 kb on + strand, within Echvi_0161 at 165.370 kb on + strand, within Echvi_0161 at 165.371 kb on - strand, within Echvi_0161 at 165.516 kb on - strand at 165.517 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 163,548 + Echvi_0160 0.51 +1.4 163,548 + Echvi_0160 0.51 +0.0 163,549 - Echvi_0160 0.51 -0.5 163,549 - Echvi_0160 0.51 +1.5 163,558 + Echvi_0160 0.52 -0.1 163,627 + Echvi_0160 0.56 +0.1 163,627 + Echvi_0160 0.56 -0.3 163,711 + Echvi_0160 0.62 +1.1 163,712 - Echvi_0160 0.62 +0.2 163,713 + Echvi_0160 0.62 +0.7 163,713 + Echvi_0160 0.62 -0.1 163,713 + Echvi_0160 0.62 +1.3 163,714 - Echvi_0160 0.62 -0.4 163,842 - Echvi_0160 0.70 -1.3 163,842 - Echvi_0160 0.70 -0.8 163,844 - Echvi_0160 0.70 +0.9 164,000 - Echvi_0160 0.80 -0.3 164,014 - Echvi_0160 0.81 +0.6 164,014 - Echvi_0160 0.81 +0.7 164,019 + Echvi_0160 0.81 +0.1 164,019 + Echvi_0160 0.81 +0.7 164,020 - Echvi_0160 0.81 -1.2 164,020 - Echvi_0160 0.81 -1.6 164,073 + Echvi_0160 0.85 +0.1 164,074 - Echvi_0160 0.85 -0.3 164,076 + Echvi_0160 0.85 +1.5 164,102 - Echvi_0160 0.86 -1.1 164,164 + +0.1 164,204 - -2.1 164,290 + -0.2 164,290 + +0.1 164,293 - +0.8 164,293 - -0.3 164,331 + -1.7 164,332 - -1.0 164,342 + -0.8 164,342 + -0.1 164,343 - +0.8 164,343 - +0.8 164,347 + +0.1 164,347 + +0.1 164,347 + -0.1 164,348 - +0.2 164,408 + -0.6 164,429 + +2.2 164,569 + -1.0 164,575 + -0.0 164,746 - Echvi_0161 0.24 -0.3 164,797 + Echvi_0161 0.29 +0.6 164,868 + Echvi_0161 0.37 +2.7 164,868 + Echvi_0161 0.37 -0.4 165,027 + Echvi_0161 0.53 -1.3 165,088 + Echvi_0161 0.59 -1.6 165,088 + Echvi_0161 0.59 +1.1 165,110 + Echvi_0161 0.62 -2.5 165,110 + Echvi_0161 0.62 +0.3 165,174 + Echvi_0161 0.68 -1.9 165,174 + Echvi_0161 0.68 -1.0 165,174 + Echvi_0161 0.68 -1.5 165,175 - Echvi_0161 0.68 -1.9 165,175 - Echvi_0161 0.68 -2.6 165,175 - Echvi_0161 0.68 -0.0 165,177 + Echvi_0161 0.69 -0.3 165,177 + Echvi_0161 0.69 -1.2 165,178 - Echvi_0161 0.69 -2.2 165,178 - Echvi_0161 0.69 -0.9 165,370 + Echvi_0161 0.89 -1.5 165,370 + Echvi_0161 0.89 +0.6 165,371 - Echvi_0161 0.89 -1.4 165,516 - +1.7 165,517 + -0.5
Or see this region's nucleotide sequence