Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0047 and Echvi_0048 are separated by 122 nucleotides Echvi_0048 and Echvi_0049 are separated by 202 nucleotides Echvi_0049 and Echvi_0050 are separated by 12 nucleotides
Echvi_0047: Echvi_0047 - His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 44,410 to 45,468
_0047
Echvi_0048: Echvi_0048 - Pseudouridylate synthases, 23S RNA-specific, at 45,591 to 46,298
_0048
Echvi_0049: Echvi_0049 - ribosomal protein L13, bacterial type, at 46,501 to 46,944
_0049
Echvi_0050: Echvi_0050 - Ribosomal protein S9, at 46,957 to 47,343
_0050
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 44.601 kb on + strand, within Echvi_0047 at 44.602 kb on - strand, within Echvi_0047 at 44.602 kb on - strand, within Echvi_0047 at 44.606 kb on - strand, within Echvi_0047 at 44.714 kb on - strand, within Echvi_0047 at 44.831 kb on - strand, within Echvi_0047 at 44.873 kb on + strand, within Echvi_0047 at 44.949 kb on - strand, within Echvi_0047 at 44.983 kb on + strand, within Echvi_0047 at 44.984 kb on - strand, within Echvi_0047 at 44.984 kb on - strand, within Echvi_0047 at 45.057 kb on + strand at 45.058 kb on - strand, within Echvi_0047 at 45.076 kb on + strand, within Echvi_0047 at 45.077 kb on - strand, within Echvi_0047 at 45.094 kb on + strand, within Echvi_0047 at 45.095 kb on - strand, within Echvi_0047 at 45.118 kb on - strand, within Echvi_0047 at 45.163 kb on + strand, within Echvi_0047 at 45.164 kb on - strand, within Echvi_0047 at 45.164 kb on - strand, within Echvi_0047 at 45.204 kb on + strand, within Echvi_0047 at 45.362 kb on + strand, within Echvi_0047 at 45.362 kb on + strand, within Echvi_0047 at 45.363 kb on - strand at 45.363 kb on - strand at 45.512 kb on + strand at 45.601 kb on + strand at 45.617 kb on + strand at 45.639 kb on + strand at 45.641 kb on + strand at 45.641 kb on + strand at 45.663 kb on + strand, within Echvi_0048 at 45.663 kb on + strand, within Echvi_0048 at 45.723 kb on + strand, within Echvi_0048 at 45.723 kb on + strand, within Echvi_0048 at 45.883 kb on - strand, within Echvi_0048 at 46.127 kb on + strand, within Echvi_0048 at 46.197 kb on + strand, within Echvi_0048 at 46.328 kb on - strand at 46.333 kb on - strand at 46.392 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 44,601 + Echvi_0047 0.18 +1.4 44,602 - Echvi_0047 0.18 +0.4 44,602 - Echvi_0047 0.18 -1.5 44,606 - Echvi_0047 0.19 -1.2 44,714 - Echvi_0047 0.29 +0.1 44,831 - Echvi_0047 0.40 +0.9 44,873 + Echvi_0047 0.44 -0.9 44,949 - Echvi_0047 0.51 -0.6 44,983 + Echvi_0047 0.54 +1.1 44,984 - Echvi_0047 0.54 +0.3 44,984 - Echvi_0047 0.54 -0.9 45,057 + +2.7 45,058 - Echvi_0047 0.61 +2.0 45,076 + Echvi_0047 0.63 +0.4 45,077 - Echvi_0047 0.63 +0.1 45,094 + Echvi_0047 0.65 -0.9 45,095 - Echvi_0047 0.65 -1.8 45,118 - Echvi_0047 0.67 -0.3 45,163 + Echvi_0047 0.71 +1.4 45,164 - Echvi_0047 0.71 +0.1 45,164 - Echvi_0047 0.71 +0.7 45,204 + Echvi_0047 0.75 -0.8 45,362 + Echvi_0047 0.90 +0.7 45,362 + Echvi_0047 0.90 -0.6 45,363 - -2.2 45,363 - -1.5 45,512 + +0.4 45,601 + -1.8 45,617 + -1.9 45,639 + -1.6 45,641 + +0.6 45,641 + -0.6 45,663 + Echvi_0048 0.10 -0.9 45,663 + Echvi_0048 0.10 -0.9 45,723 + Echvi_0048 0.19 -2.8 45,723 + Echvi_0048 0.19 +0.5 45,883 - Echvi_0048 0.41 +0.1 46,127 + Echvi_0048 0.76 +0.7 46,197 + Echvi_0048 0.86 -1.9 46,328 - +0.7 46,333 - +0.4 46,392 - +1.7
Or see this region's nucleotide sequence