Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01635 and ECD_t00027 are separated by 307 nucleotides ECD_t00027 and ECD_t00028 are separated by 4 nucleotides ECD_t00028 and ECD_01636 are separated by 107 nucleotides ECD_01636 and ECD_01637 are separated by 125 nucleotides
ECD_01635: ECD_01635 - autotransporter adhesin-related protein, at 1,690,140 to 1,691,396
_01635
ECD_t00027: ECD_t00027 - tRNA-Val, at 1,691,704 to 1,691,780
_t00027
ECD_t00028: ECD_t00028 - tRNA-Val, at 1,691,785 to 1,691,861
_t00028
ECD_01636: ECD_01636 - putative monooxygenase, at 1,691,969 to 1,692,274
_01636
ECD_01637: ECD_01637 - putative oxidoreductase, at 1,692,400 to 1,694,004
_01637
Position (kb)
1691
1692 Strain fitness (log2 ratio)
-1
0
1
2 at 1690.779 kb on - strand, within ECD_01635 at 1690.806 kb on - strand, within ECD_01635 at 1690.933 kb on - strand, within ECD_01635 at 1691.439 kb on - strand at 1691.695 kb on + strand at 1691.695 kb on + strand at 1691.695 kb on + strand at 1691.711 kb on + strand at 1691.711 kb on + strand at 1691.916 kb on + strand at 1691.916 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,690,779 - ECD_01635 0.51 -0.6 1,690,806 - ECD_01635 0.53 +0.2 1,690,933 - ECD_01635 0.63 +1.3 1,691,439 - -0.7 1,691,695 + +1.3 1,691,695 + +1.9 1,691,695 + +2.3 1,691,711 + +2.0 1,691,711 + +1.2 1,691,916 + +0.1 1,691,916 + -1.7
Or see this region's nucleotide sequence