Strain Fitness in Escherichia coli BL21 around ECD_04183

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04182 and ECD_04183 are separated by 481 nucleotidesECD_04183 and ECD_04184 are separated by 64 nucleotidesECD_04184 and ECD_04185 are separated by 36 nucleotides ECD_04182: ECD_04182 - tyrosine recombinase/inversion of on/off regulator of fimA, at 4,451,316 to 4,451,912 _04182 ECD_04183: ECD_04183 - major type 1 subunit fimbrin (pilin), at 4,452,394 to 4,452,942 _04183 ECD_04184: ECD_04184 - fimbrial protein involved in type 1 pilus biosynthesis, at 4,453,007 to 4,453,546 _04184 ECD_04185: ECD_04185 - periplasmic chaperone, at 4,453,583 to 4,454,308 _04185 Position (kb) 4452 4453Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4451.408 kb on + strand, within ECD_04182at 4451.441 kb on + strand, within ECD_04182at 4451.588 kb on + strand, within ECD_04182at 4451.620 kb on + strand, within ECD_04182at 4451.621 kb on - strand, within ECD_04182at 4451.723 kb on + strand, within ECD_04182at 4451.724 kb on - strand, within ECD_04182at 4451.791 kb on - strand, within ECD_04182at 4451.817 kb on - strand, within ECD_04182at 4451.989 kb on - strandat 4452.101 kb on + strandat 4452.105 kb on + strandat 4452.448 kb on - strandat 4452.498 kb on + strand, within ECD_04183at 4452.624 kb on + strand, within ECD_04183at 4452.664 kb on - strand, within ECD_04183at 4452.664 kb on - strand, within ECD_04183at 4452.708 kb on + strand, within ECD_04183at 4452.816 kb on + strand, within ECD_04183at 4452.817 kb on - strand, within ECD_04183at 4452.850 kb on - strand, within ECD_04183at 4452.850 kb on - strand, within ECD_04183at 4452.934 kb on + strandat 4453.023 kb on + strandat 4453.023 kb on + strandat 4453.078 kb on + strand, within ECD_04184at 4453.255 kb on + strand, within ECD_04184at 4453.278 kb on + strand, within ECD_04184at 4453.279 kb on - strand, within ECD_04184at 4453.279 kb on - strand, within ECD_04184at 4453.447 kb on + strand, within ECD_04184at 4453.560 kb on - strandat 4453.606 kb on - strandat 4453.763 kb on - strand, within ECD_04185at 4453.781 kb on + strand, within ECD_04185

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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4,451,408 + ECD_04182 0.15 +0.5
4,451,441 + ECD_04182 0.21 -0.1
4,451,588 + ECD_04182 0.46 -0.8
4,451,620 + ECD_04182 0.51 +0.4
4,451,621 - ECD_04182 0.51 +0.1
4,451,723 + ECD_04182 0.68 +0.9
4,451,724 - ECD_04182 0.68 -1.2
4,451,791 - ECD_04182 0.80 -1.3
4,451,817 - ECD_04182 0.84 +0.2
4,451,989 - -0.1
4,452,101 + +0.1
4,452,105 + +0.5
4,452,448 - +1.9
4,452,498 + ECD_04183 0.19 +0.3
4,452,624 + ECD_04183 0.42 -2.8
4,452,664 - ECD_04183 0.49 -0.8
4,452,664 - ECD_04183 0.49 -0.2
4,452,708 + ECD_04183 0.57 -0.4
4,452,816 + ECD_04183 0.77 -1.5
4,452,817 - ECD_04183 0.77 -0.8
4,452,850 - ECD_04183 0.83 -1.0
4,452,850 - ECD_04183 0.83 -0.4
4,452,934 + +0.6
4,453,023 + -1.4
4,453,023 + -1.4
4,453,078 + ECD_04184 0.13 +0.7
4,453,255 + ECD_04184 0.46 -0.9
4,453,278 + ECD_04184 0.50 +0.7
4,453,279 - ECD_04184 0.50 +0.9
4,453,279 - ECD_04184 0.50 +0.8
4,453,447 + ECD_04184 0.81 +0.8
4,453,560 - -1.8
4,453,606 - -1.1
4,453,763 - ECD_04185 0.25 -1.0
4,453,781 + ECD_04185 0.27 +0.2

Or see this region's nucleotide sequence