Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04182 and ECD_04183 are separated by 481 nucleotides ECD_04183 and ECD_04184 are separated by 64 nucleotides ECD_04184 and ECD_04185 are separated by 36 nucleotides
ECD_04182: ECD_04182 - tyrosine recombinase/inversion of on/off regulator of fimA, at 4,451,316 to 4,451,912
_04182
ECD_04183: ECD_04183 - major type 1 subunit fimbrin (pilin), at 4,452,394 to 4,452,942
_04183
ECD_04184: ECD_04184 - fimbrial protein involved in type 1 pilus biosynthesis, at 4,453,007 to 4,453,546
_04184
ECD_04185: ECD_04185 - periplasmic chaperone, at 4,453,583 to 4,454,308
_04185
Position (kb)
4452
4453 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4451.408 kb on + strand, within ECD_04182 at 4451.441 kb on + strand, within ECD_04182 at 4451.588 kb on + strand, within ECD_04182 at 4451.620 kb on + strand, within ECD_04182 at 4451.621 kb on - strand, within ECD_04182 at 4451.723 kb on + strand, within ECD_04182 at 4451.724 kb on - strand, within ECD_04182 at 4451.791 kb on - strand, within ECD_04182 at 4451.817 kb on - strand, within ECD_04182 at 4451.989 kb on - strand at 4452.101 kb on + strand at 4452.105 kb on + strand at 4452.448 kb on - strand at 4452.498 kb on + strand, within ECD_04183 at 4452.624 kb on + strand, within ECD_04183 at 4452.664 kb on - strand, within ECD_04183 at 4452.664 kb on - strand, within ECD_04183 at 4452.708 kb on + strand, within ECD_04183 at 4452.816 kb on + strand, within ECD_04183 at 4452.817 kb on - strand, within ECD_04183 at 4452.850 kb on - strand, within ECD_04183 at 4452.850 kb on - strand, within ECD_04183 at 4452.934 kb on + strand at 4453.023 kb on + strand at 4453.023 kb on + strand at 4453.078 kb on + strand, within ECD_04184 at 4453.255 kb on + strand, within ECD_04184 at 4453.278 kb on + strand, within ECD_04184 at 4453.279 kb on - strand, within ECD_04184 at 4453.279 kb on - strand, within ECD_04184 at 4453.447 kb on + strand, within ECD_04184 at 4453.560 kb on - strand at 4453.606 kb on - strand at 4453.763 kb on - strand, within ECD_04185 at 4453.781 kb on + strand, within ECD_04185
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 4,451,408 + ECD_04182 0.15 +0.5 4,451,441 + ECD_04182 0.21 -0.1 4,451,588 + ECD_04182 0.46 -0.8 4,451,620 + ECD_04182 0.51 +0.4 4,451,621 - ECD_04182 0.51 +0.1 4,451,723 + ECD_04182 0.68 +0.9 4,451,724 - ECD_04182 0.68 -1.2 4,451,791 - ECD_04182 0.80 -1.3 4,451,817 - ECD_04182 0.84 +0.2 4,451,989 - -0.1 4,452,101 + +0.1 4,452,105 + +0.5 4,452,448 - +1.9 4,452,498 + ECD_04183 0.19 +0.3 4,452,624 + ECD_04183 0.42 -2.8 4,452,664 - ECD_04183 0.49 -0.8 4,452,664 - ECD_04183 0.49 -0.2 4,452,708 + ECD_04183 0.57 -0.4 4,452,816 + ECD_04183 0.77 -1.5 4,452,817 - ECD_04183 0.77 -0.8 4,452,850 - ECD_04183 0.83 -1.0 4,452,850 - ECD_04183 0.83 -0.4 4,452,934 + +0.6 4,453,023 + -1.4 4,453,023 + -1.4 4,453,078 + ECD_04184 0.13 +0.7 4,453,255 + ECD_04184 0.46 -0.9 4,453,278 + ECD_04184 0.50 +0.7 4,453,279 - ECD_04184 0.50 +0.9 4,453,279 - ECD_04184 0.50 +0.8 4,453,447 + ECD_04184 0.81 +0.8 4,453,560 - -1.8 4,453,606 - -1.1 4,453,763 - ECD_04185 0.25 -1.0 4,453,781 + ECD_04185 0.27 +0.2
Or see this region's nucleotide sequence