Strain Fitness in Escherichia coli BL21 around ECD_03981

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03980 and ECD_03981 overlap by 4 nucleotidesECD_03981 and ECD_03982 are separated by 263 nucleotides ECD_03980: ECD_03980 - clamp-binding sister replication fork colocalization protein, dynamin-related, at 4,234,214 to 4,236,442 _03980 ECD_03981: ECD_03981 - YjcZ family protein; yhjH motility defect suppressor, at 4,236,439 to 4,237,317 _03981 ECD_03982: ECD_03982 - proline/glycine betaine transporter, at 4,237,581 to 4,239,083 _03982 Position (kb) 4236 4237 4238Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4235.444 kb on + strand, within ECD_03980at 4235.444 kb on + strand, within ECD_03980at 4235.445 kb on - strand, within ECD_03980at 4235.462 kb on + strand, within ECD_03980at 4235.462 kb on + strand, within ECD_03980at 4235.462 kb on + strand, within ECD_03980at 4235.463 kb on - strand, within ECD_03980at 4235.485 kb on + strand, within ECD_03980at 4235.486 kb on - strand, within ECD_03980at 4235.519 kb on + strand, within ECD_03980at 4235.575 kb on + strand, within ECD_03980at 4235.604 kb on + strand, within ECD_03980at 4235.605 kb on - strand, within ECD_03980at 4235.642 kb on - strand, within ECD_03980at 4235.784 kb on + strand, within ECD_03980at 4235.784 kb on + strand, within ECD_03980at 4235.785 kb on - strand, within ECD_03980at 4235.818 kb on + strand, within ECD_03980at 4235.958 kb on + strand, within ECD_03980at 4235.958 kb on + strand, within ECD_03980at 4235.959 kb on - strand, within ECD_03980at 4235.959 kb on - strand, within ECD_03980at 4236.039 kb on + strand, within ECD_03980at 4236.128 kb on + strand, within ECD_03980at 4236.128 kb on + strand, within ECD_03980at 4236.129 kb on - strand, within ECD_03980at 4236.129 kb on - strand, within ECD_03980at 4236.151 kb on - strand, within ECD_03980at 4236.235 kb on + strandat 4236.273 kb on + strandat 4236.273 kb on + strandat 4236.286 kb on - strandat 4236.452 kb on + strandat 4236.626 kb on + strand, within ECD_03981at 4236.796 kb on + strand, within ECD_03981at 4236.796 kb on + strand, within ECD_03981at 4236.796 kb on + strand, within ECD_03981at 4236.796 kb on + strand, within ECD_03981at 4236.797 kb on - strand, within ECD_03981at 4236.855 kb on - strand, within ECD_03981at 4236.913 kb on + strand, within ECD_03981at 4237.069 kb on - strand, within ECD_03981at 4237.096 kb on + strand, within ECD_03981at 4237.096 kb on + strand, within ECD_03981at 4237.097 kb on - strand, within ECD_03981at 4237.099 kb on + strand, within ECD_03981at 4237.099 kb on + strand, within ECD_03981at 4237.099 kb on + strand, within ECD_03981at 4237.100 kb on - strand, within ECD_03981at 4237.100 kb on - strand, within ECD_03981at 4237.100 kb on - strand, within ECD_03981at 4237.100 kb on - strand, within ECD_03981at 4237.158 kb on - strand, within ECD_03981at 4237.189 kb on - strand, within ECD_03981at 4237.328 kb on - strandat 4237.439 kb on + strandat 4237.440 kb on - strandat 4237.483 kb on + strandat 4237.580 kb on + strandat 4237.581 kb on - strandat 4237.581 kb on - strandat 4237.710 kb on + strandat 4237.725 kb on + strandat 4237.725 kb on + strandat 4237.732 kb on + strand, within ECD_03982at 4237.841 kb on + strand, within ECD_03982at 4237.857 kb on + strand, within ECD_03982at 4237.886 kb on + strand, within ECD_03982at 4237.887 kb on - strand, within ECD_03982at 4237.887 kb on - strand, within ECD_03982at 4237.895 kb on + strand, within ECD_03982at 4237.907 kb on + strand, within ECD_03982at 4237.907 kb on + strand, within ECD_03982at 4237.917 kb on - strand, within ECD_03982at 4237.924 kb on + strand, within ECD_03982at 4237.924 kb on + strand, within ECD_03982at 4237.979 kb on + strand, within ECD_03982at 4237.980 kb on - strand, within ECD_03982at 4238.013 kb on + strand, within ECD_03982at 4238.013 kb on + strand, within ECD_03982at 4238.013 kb on + strand, within ECD_03982at 4238.030 kb on - strand, within ECD_03982at 4238.096 kb on + strand, within ECD_03982at 4238.096 kb on + strand, within ECD_03982at 4238.134 kb on + strand, within ECD_03982at 4238.195 kb on + strand, within ECD_03982at 4238.196 kb on - strand, within ECD_03982

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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4,235,444 + ECD_03980 0.55 +0.5
4,235,444 + ECD_03980 0.55 +0.2
4,235,445 - ECD_03980 0.55 -0.0
4,235,462 + ECD_03980 0.56 -1.7
4,235,462 + ECD_03980 0.56 +0.6
4,235,462 + ECD_03980 0.56 -0.4
4,235,463 - ECD_03980 0.56 +0.5
4,235,485 + ECD_03980 0.57 +0.3
4,235,486 - ECD_03980 0.57 -0.0
4,235,519 + ECD_03980 0.59 -1.2
4,235,575 + ECD_03980 0.61 -1.6
4,235,604 + ECD_03980 0.62 -0.6
4,235,605 - ECD_03980 0.62 +3.2
4,235,642 - ECD_03980 0.64 -0.2
4,235,784 + ECD_03980 0.70 +1.3
4,235,784 + ECD_03980 0.70 -1.5
4,235,785 - ECD_03980 0.70 -0.5
4,235,818 + ECD_03980 0.72 -0.7
4,235,958 + ECD_03980 0.78 -0.1
4,235,958 + ECD_03980 0.78 -1.4
4,235,959 - ECD_03980 0.78 -0.3
4,235,959 - ECD_03980 0.78 -2.3
4,236,039 + ECD_03980 0.82 -1.1
4,236,128 + ECD_03980 0.86 -0.1
4,236,128 + ECD_03980 0.86 -0.3
4,236,129 - ECD_03980 0.86 +0.1
4,236,129 - ECD_03980 0.86 -0.2
4,236,151 - ECD_03980 0.87 +1.1
4,236,235 + -1.1
4,236,273 + -1.0
4,236,273 + -0.2
4,236,286 - -0.5
4,236,452 + -0.3
4,236,626 + ECD_03981 0.21 +0.8
4,236,796 + ECD_03981 0.41 -0.2
4,236,796 + ECD_03981 0.41 -0.2
4,236,796 + ECD_03981 0.41 -0.6
4,236,796 + ECD_03981 0.41 -0.3
4,236,797 - ECD_03981 0.41 +0.2
4,236,855 - ECD_03981 0.47 +1.2
4,236,913 + ECD_03981 0.54 -0.4
4,237,069 - ECD_03981 0.72 -1.3
4,237,096 + ECD_03981 0.75 +0.7
4,237,096 + ECD_03981 0.75 +0.9
4,237,097 - ECD_03981 0.75 -0.1
4,237,099 + ECD_03981 0.75 +1.2
4,237,099 + ECD_03981 0.75 +1.1
4,237,099 + ECD_03981 0.75 +0.6
4,237,100 - ECD_03981 0.75 -1.4
4,237,100 - ECD_03981 0.75 +0.3
4,237,100 - ECD_03981 0.75 -2.7
4,237,100 - ECD_03981 0.75 -0.6
4,237,158 - ECD_03981 0.82 +0.3
4,237,189 - ECD_03981 0.85 +1.0
4,237,328 - +0.5
4,237,439 + -2.1
4,237,440 - -0.6
4,237,483 + -0.2
4,237,580 + -2.2
4,237,581 - -0.7
4,237,581 - -0.7
4,237,710 + -0.3
4,237,725 + -0.9
4,237,725 + -1.3
4,237,732 + ECD_03982 0.10 +1.2
4,237,841 + ECD_03982 0.17 -0.4
4,237,857 + ECD_03982 0.18 +0.0
4,237,886 + ECD_03982 0.20 -1.3
4,237,887 - ECD_03982 0.20 -0.7
4,237,887 - ECD_03982 0.20 -1.4
4,237,895 + ECD_03982 0.21 -2.1
4,237,907 + ECD_03982 0.22 -2.8
4,237,907 + ECD_03982 0.22 -0.5
4,237,917 - ECD_03982 0.22 +0.6
4,237,924 + ECD_03982 0.23 -0.1
4,237,924 + ECD_03982 0.23 +0.2
4,237,979 + ECD_03982 0.26 +0.6
4,237,980 - ECD_03982 0.27 +0.1
4,238,013 + ECD_03982 0.29 +0.5
4,238,013 + ECD_03982 0.29 +0.5
4,238,013 + ECD_03982 0.29 -0.3
4,238,030 - ECD_03982 0.30 -1.5
4,238,096 + ECD_03982 0.34 +0.1
4,238,096 + ECD_03982 0.34 +1.5
4,238,134 + ECD_03982 0.37 +0.1
4,238,195 + ECD_03982 0.41 +0.2
4,238,196 - ECD_03982 0.41 -1.3

Or see this region's nucleotide sequence