Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03831 and ECD_03832 are separated by 10 nucleotides ECD_03832 and ECD_03833 are separated by 11 nucleotides ECD_03833 and ECD_03834 are separated by 308 nucleotides
ECD_03831: ECD_03831 - glycerol dehydrogenase, NAD+ dependent; 1,2-propanediol:NAD+ oxidoreductase, at 4,046,479 to 4,047,582
_03831
ECD_03832: ECD_03832 - fructose-6-phosphate aldolase 2, at 4,047,593 to 4,048,255
_03832
ECD_03833: ECD_03833 - putative PTS enzyme: Hpr, enzyme I and II components, at 4,048,267 to 4,050,768
_03833
ECD_03834: ECD_03834 - putative enzyme IIC component of PTS, at 4,051,077 to 4,052,156
_03834
Position (kb)
4048
4049
4050
4051 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4047.512 kb on + strand at 4047.551 kb on + strand at 4047.552 kb on - strand at 4047.583 kb on - strand at 4047.583 kb on - strand at 4047.595 kb on - strand at 4047.604 kb on + strand at 4047.605 kb on - strand at 4047.605 kb on - strand at 4047.644 kb on + strand at 4047.645 kb on - strand at 4047.646 kb on + strand at 4047.647 kb on - strand at 4047.686 kb on + strand, within ECD_03832 at 4047.686 kb on + strand, within ECD_03832 at 4047.687 kb on - strand, within ECD_03832 at 4047.687 kb on - strand, within ECD_03832 at 4047.687 kb on - strand, within ECD_03832 at 4047.692 kb on + strand, within ECD_03832 at 4047.693 kb on - strand, within ECD_03832 at 4047.693 kb on - strand, within ECD_03832 at 4047.693 kb on - strand, within ECD_03832 at 4047.864 kb on + strand, within ECD_03832 at 4047.865 kb on - strand, within ECD_03832 at 4047.877 kb on - strand, within ECD_03832 at 4047.921 kb on + strand, within ECD_03832 at 4047.923 kb on + strand, within ECD_03832 at 4047.924 kb on - strand, within ECD_03832 at 4047.924 kb on - strand, within ECD_03832 at 4047.924 kb on - strand, within ECD_03832 at 4047.943 kb on + strand, within ECD_03832 at 4048.055 kb on - strand, within ECD_03832 at 4048.055 kb on - strand, within ECD_03832 at 4048.055 kb on - strand, within ECD_03832 at 4048.075 kb on + strand, within ECD_03832 at 4048.076 kb on - strand, within ECD_03832 at 4048.076 kb on - strand, within ECD_03832 at 4048.175 kb on - strand, within ECD_03832 at 4048.175 kb on - strand, within ECD_03832 at 4048.175 kb on - strand, within ECD_03832 at 4048.200 kb on - strand at 4048.200 kb on - strand at 4048.245 kb on + strand at 4048.246 kb on - strand at 4048.269 kb on - strand at 4048.269 kb on - strand at 4048.386 kb on + strand at 4048.386 kb on + strand at 4048.386 kb on + strand at 4048.386 kb on + strand at 4048.387 kb on - strand at 4048.425 kb on + strand at 4048.481 kb on - strand at 4048.576 kb on + strand, within ECD_03833 at 4048.577 kb on - strand, within ECD_03833 at 4048.765 kb on - strand, within ECD_03833 at 4049.013 kb on - strand, within ECD_03833 at 4049.028 kb on + strand, within ECD_03833 at 4049.057 kb on + strand, within ECD_03833 at 4049.082 kb on + strand, within ECD_03833 at 4049.083 kb on - strand, within ECD_03833 at 4049.149 kb on - strand, within ECD_03833 at 4049.233 kb on + strand, within ECD_03833 at 4049.234 kb on - strand, within ECD_03833 at 4049.311 kb on + strand, within ECD_03833 at 4049.312 kb on - strand, within ECD_03833 at 4049.312 kb on - strand, within ECD_03833 at 4049.312 kb on - strand, within ECD_03833 at 4049.336 kb on + strand, within ECD_03833 at 4049.345 kb on + strand, within ECD_03833 at 4049.345 kb on + strand, within ECD_03833 at 4049.349 kb on + strand, within ECD_03833 at 4049.403 kb on - strand, within ECD_03833 at 4049.446 kb on - strand, within ECD_03833 at 4049.492 kb on + strand, within ECD_03833 at 4049.531 kb on + strand, within ECD_03833 at 4049.531 kb on + strand, within ECD_03833 at 4049.532 kb on - strand, within ECD_03833 at 4049.532 kb on - strand, within ECD_03833 at 4049.532 kb on - strand, within ECD_03833 at 4049.532 kb on - strand, within ECD_03833 at 4049.699 kb on - strand, within ECD_03833 at 4049.718 kb on - strand, within ECD_03833 at 4049.718 kb on - strand, within ECD_03833 at 4049.728 kb on + strand, within ECD_03833 at 4049.778 kb on - strand, within ECD_03833 at 4049.778 kb on - strand, within ECD_03833 at 4049.865 kb on + strand, within ECD_03833 at 4049.866 kb on - strand, within ECD_03833 at 4049.866 kb on - strand, within ECD_03833 at 4049.866 kb on - strand, within ECD_03833 at 4049.866 kb on - strand, within ECD_03833 at 4049.866 kb on - strand, within ECD_03833 at 4049.894 kb on - strand, within ECD_03833 at 4049.958 kb on + strand, within ECD_03833 at 4049.959 kb on - strand, within ECD_03833 at 4049.959 kb on - strand, within ECD_03833 at 4050.025 kb on + strand, within ECD_03833 at 4050.026 kb on - strand, within ECD_03833 at 4050.046 kb on + strand, within ECD_03833 at 4050.072 kb on - strand, within ECD_03833 at 4050.337 kb on - strand, within ECD_03833 at 4050.355 kb on + strand, within ECD_03833 at 4050.356 kb on - strand, within ECD_03833 at 4050.658 kb on - strand at 4050.658 kb on - strand at 4050.724 kb on + strand at 4050.724 kb on + strand at 4050.724 kb on + strand at 4050.724 kb on + strand at 4050.725 kb on - strand at 4050.725 kb on - strand at 4050.725 kb on - strand at 4050.725 kb on - strand at 4050.725 kb on - strand at 4050.733 kb on - strand at 4050.737 kb on - strand at 4050.934 kb on - strand at 4051.021 kb on - strand at 4051.077 kb on - strand at 4051.121 kb on - strand at 4051.121 kb on - strand at 4051.194 kb on + strand, within ECD_03834 at 4051.195 kb on - strand, within ECD_03834 at 4051.195 kb on - strand, within ECD_03834 at 4051.195 kb on - strand, within ECD_03834 at 4051.251 kb on + strand, within ECD_03834 at 4051.299 kb on + strand, within ECD_03834 at 4051.299 kb on + strand, within ECD_03834 at 4051.300 kb on - strand, within ECD_03834 at 4051.431 kb on + strand, within ECD_03834 at 4051.454 kb on + strand, within ECD_03834 at 4051.478 kb on + strand, within ECD_03834 at 4051.478 kb on + strand, within ECD_03834 at 4051.478 kb on + strand, within ECD_03834 at 4051.479 kb on - strand, within ECD_03834 at 4051.487 kb on + strand, within ECD_03834 at 4051.487 kb on + strand, within ECD_03834 at 4051.549 kb on + strand, within ECD_03834 at 4051.610 kb on + strand, within ECD_03834 at 4051.645 kb on + strand, within ECD_03834 at 4051.677 kb on + strand, within ECD_03834 at 4051.713 kb on + strand, within ECD_03834 at 4051.713 kb on + strand, within ECD_03834 at 4051.713 kb on + strand, within ECD_03834 at 4051.714 kb on - strand, within ECD_03834 at 4051.714 kb on - strand, within ECD_03834 at 4051.714 kb on - strand, within ECD_03834 at 4051.714 kb on - strand, within ECD_03834 at 4051.716 kb on - strand, within ECD_03834 at 4051.743 kb on - strand, within ECD_03834
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 4,047,512 + -0.0 4,047,551 + +1.6 4,047,552 - +1.0 4,047,583 - +0.6 4,047,583 - -2.9 4,047,595 - -0.3 4,047,604 + +0.6 4,047,605 - -1.5 4,047,605 - -0.4 4,047,644 + -2.3 4,047,645 - +0.2 4,047,646 + +2.2 4,047,647 - +0.2 4,047,686 + ECD_03832 0.14 -1.4 4,047,686 + ECD_03832 0.14 -2.1 4,047,687 - ECD_03832 0.14 -1.2 4,047,687 - ECD_03832 0.14 -0.1 4,047,687 - ECD_03832 0.14 -0.7 4,047,692 + ECD_03832 0.15 +0.2 4,047,693 - ECD_03832 0.15 -1.0 4,047,693 - ECD_03832 0.15 -0.4 4,047,693 - ECD_03832 0.15 -0.6 4,047,864 + ECD_03832 0.41 -1.2 4,047,865 - ECD_03832 0.41 -0.1 4,047,877 - ECD_03832 0.43 -3.1 4,047,921 + ECD_03832 0.49 -2.3 4,047,923 + ECD_03832 0.50 -1.3 4,047,924 - ECD_03832 0.50 -0.0 4,047,924 - ECD_03832 0.50 -0.6 4,047,924 - ECD_03832 0.50 -0.6 4,047,943 + ECD_03832 0.53 +1.7 4,048,055 - ECD_03832 0.70 -0.4 4,048,055 - ECD_03832 0.70 -0.7 4,048,055 - ECD_03832 0.70 -0.9 4,048,075 + ECD_03832 0.73 -0.7 4,048,076 - ECD_03832 0.73 +0.6 4,048,076 - ECD_03832 0.73 -0.2 4,048,175 - ECD_03832 0.88 +0.2 4,048,175 - ECD_03832 0.88 -0.2 4,048,175 - ECD_03832 0.88 -2.5 4,048,200 - -0.3 4,048,200 - +0.7 4,048,245 + -1.5 4,048,246 - -2.6 4,048,269 - +0.3 4,048,269 - -1.2 4,048,386 + -2.8 4,048,386 + +0.8 4,048,386 + +1.8 4,048,386 + -1.4 4,048,387 - -0.7 4,048,425 + -0.1 4,048,481 - -0.1 4,048,576 + ECD_03833 0.12 -1.3 4,048,577 - ECD_03833 0.12 -0.7 4,048,765 - ECD_03833 0.20 +0.3 4,049,013 - ECD_03833 0.30 +0.9 4,049,028 + ECD_03833 0.30 -1.6 4,049,057 + ECD_03833 0.32 -0.9 4,049,082 + ECD_03833 0.33 -1.1 4,049,083 - ECD_03833 0.33 +0.4 4,049,149 - ECD_03833 0.35 -0.3 4,049,233 + ECD_03833 0.39 +0.4 4,049,234 - ECD_03833 0.39 -1.5 4,049,311 + ECD_03833 0.42 -1.3 4,049,312 - ECD_03833 0.42 +0.9 4,049,312 - ECD_03833 0.42 +0.5 4,049,312 - ECD_03833 0.42 -1.9 4,049,336 + ECD_03833 0.43 -1.6 4,049,345 + ECD_03833 0.43 -0.1 4,049,345 + ECD_03833 0.43 -1.5 4,049,349 + ECD_03833 0.43 -2.6 4,049,403 - ECD_03833 0.45 +1.2 4,049,446 - ECD_03833 0.47 +0.4 4,049,492 + ECD_03833 0.49 -0.4 4,049,531 + ECD_03833 0.51 -0.3 4,049,531 + ECD_03833 0.51 +0.9 4,049,532 - ECD_03833 0.51 +0.1 4,049,532 - ECD_03833 0.51 -0.7 4,049,532 - ECD_03833 0.51 +0.6 4,049,532 - ECD_03833 0.51 -0.1 4,049,699 - ECD_03833 0.57 -0.1 4,049,718 - ECD_03833 0.58 -1.2 4,049,718 - ECD_03833 0.58 +0.7 4,049,728 + ECD_03833 0.58 +1.1 4,049,778 - ECD_03833 0.60 -0.6 4,049,778 - ECD_03833 0.60 -1.2 4,049,865 + ECD_03833 0.64 +1.3 4,049,866 - ECD_03833 0.64 +0.3 4,049,866 - ECD_03833 0.64 -1.0 4,049,866 - ECD_03833 0.64 +1.4 4,049,866 - ECD_03833 0.64 -0.6 4,049,866 - ECD_03833 0.64 -2.1 4,049,894 - ECD_03833 0.65 -0.3 4,049,958 + ECD_03833 0.68 +0.7 4,049,959 - ECD_03833 0.68 +0.2 4,049,959 - ECD_03833 0.68 -1.5 4,050,025 + ECD_03833 0.70 -2.4 4,050,026 - ECD_03833 0.70 -0.7 4,050,046 + ECD_03833 0.71 -0.2 4,050,072 - ECD_03833 0.72 -0.1 4,050,337 - ECD_03833 0.83 -0.9 4,050,355 + ECD_03833 0.83 -0.3 4,050,356 - ECD_03833 0.83 -1.0 4,050,658 - +0.1 4,050,658 - -0.2 4,050,724 + +0.2 4,050,724 + -0.0 4,050,724 + -1.2 4,050,724 + +0.3 4,050,725 - -0.4 4,050,725 - +0.2 4,050,725 - -1.0 4,050,725 - -0.9 4,050,725 - -0.6 4,050,733 - +0.2 4,050,737 - -0.1 4,050,934 - +0.0 4,051,021 - +0.4 4,051,077 - +1.4 4,051,121 - -0.1 4,051,121 - +0.6 4,051,194 + ECD_03834 0.11 -2.1 4,051,195 - ECD_03834 0.11 +0.4 4,051,195 - ECD_03834 0.11 +0.7 4,051,195 - ECD_03834 0.11 -0.4 4,051,251 + ECD_03834 0.16 -1.9 4,051,299 + ECD_03834 0.21 -0.3 4,051,299 + ECD_03834 0.21 -1.9 4,051,300 - ECD_03834 0.21 +0.1 4,051,431 + ECD_03834 0.33 -1.3 4,051,454 + ECD_03834 0.35 +1.2 4,051,478 + ECD_03834 0.37 +0.9 4,051,478 + ECD_03834 0.37 +0.5 4,051,478 + ECD_03834 0.37 +0.0 4,051,479 - ECD_03834 0.37 +0.3 4,051,487 + ECD_03834 0.38 +1.2 4,051,487 + ECD_03834 0.38 +0.3 4,051,549 + ECD_03834 0.44 +0.5 4,051,610 + ECD_03834 0.49 +0.5 4,051,645 + ECD_03834 0.53 +0.0 4,051,677 + ECD_03834 0.56 -0.6 4,051,713 + ECD_03834 0.59 -1.0 4,051,713 + ECD_03834 0.59 -1.2 4,051,713 + ECD_03834 0.59 +0.2 4,051,714 - ECD_03834 0.59 -2.7 4,051,714 - ECD_03834 0.59 +1.1 4,051,714 - ECD_03834 0.59 -1.7 4,051,714 - ECD_03834 0.59 -0.6 4,051,716 - ECD_03834 0.59 -1.1 4,051,743 - ECD_03834 0.62 +0.4
Or see this region's nucleotide sequence