Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03791 and ECD_03792 overlap by 17 nucleotides ECD_03792 and ECD_03793 overlap by 4 nucleotides
ECD_03791: ECD_03791 - transcriptional activator of rhaBAD and rhaT, at 4,005,658 to 4,006,494
_03791
ECD_03792: ECD_03792 - transcriptional activator of rhaSR, at 4,006,478 to 4,007,416
_03792
ECD_03793: ECD_03793 - L-rhamnose:proton symporter, at 4,007,413 to 4,008,447
_03793
Position (kb)
4006
4007
4008 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4005.551 kb on - strand at 4005.601 kb on + strand at 4005.601 kb on + strand at 4005.601 kb on + strand at 4005.601 kb on + strand at 4005.622 kb on - strand at 4005.665 kb on + strand at 4005.668 kb on + strand at 4005.668 kb on + strand at 4005.668 kb on + strand at 4005.668 kb on + strand at 4005.669 kb on - strand at 4005.669 kb on - strand at 4005.672 kb on + strand at 4005.672 kb on + strand at 4005.713 kb on + strand at 4005.820 kb on + strand, within ECD_03791 at 4005.822 kb on + strand, within ECD_03791 at 4005.874 kb on + strand, within ECD_03791 at 4005.883 kb on - strand, within ECD_03791 at 4006.016 kb on + strand, within ECD_03791 at 4006.017 kb on - strand, within ECD_03791 at 4006.076 kb on + strand, within ECD_03791 at 4006.107 kb on + strand, within ECD_03791 at 4006.107 kb on + strand, within ECD_03791 at 4006.108 kb on - strand, within ECD_03791 at 4006.116 kb on - strand, within ECD_03791 at 4006.132 kb on - strand, within ECD_03791 at 4006.268 kb on + strand, within ECD_03791 at 4006.269 kb on - strand, within ECD_03791 at 4006.269 kb on - strand, within ECD_03791 at 4006.282 kb on - strand, within ECD_03791 at 4006.352 kb on + strand, within ECD_03791 at 4006.352 kb on + strand, within ECD_03791 at 4006.352 kb on + strand, within ECD_03791 at 4006.444 kb on - strand at 4006.461 kb on + strand at 4006.462 kb on - strand at 4006.513 kb on - strand at 4006.534 kb on + strand at 4006.581 kb on + strand, within ECD_03792 at 4006.669 kb on + strand, within ECD_03792 at 4006.669 kb on + strand, within ECD_03792 at 4006.669 kb on + strand, within ECD_03792 at 4006.669 kb on + strand, within ECD_03792 at 4006.669 kb on + strand, within ECD_03792 at 4006.669 kb on + strand, within ECD_03792 at 4006.669 kb on + strand, within ECD_03792 at 4006.669 kb on + strand, within ECD_03792 at 4006.670 kb on - strand, within ECD_03792 at 4006.670 kb on - strand, within ECD_03792 at 4006.670 kb on - strand, within ECD_03792 at 4006.670 kb on - strand, within ECD_03792 at 4006.670 kb on - strand, within ECD_03792 at 4006.670 kb on - strand, within ECD_03792 at 4006.670 kb on - strand, within ECD_03792 at 4006.670 kb on - strand, within ECD_03792 at 4006.722 kb on + strand, within ECD_03792 at 4006.722 kb on + strand, within ECD_03792 at 4006.722 kb on + strand, within ECD_03792 at 4006.723 kb on - strand, within ECD_03792 at 4006.723 kb on - strand, within ECD_03792 at 4006.767 kb on - strand, within ECD_03792 at 4006.794 kb on - strand, within ECD_03792 at 4006.828 kb on + strand, within ECD_03792 at 4006.828 kb on + strand, within ECD_03792 at 4006.828 kb on + strand, within ECD_03792 at 4006.832 kb on + strand, within ECD_03792 at 4006.833 kb on - strand, within ECD_03792 at 4006.889 kb on - strand, within ECD_03792 at 4006.920 kb on + strand, within ECD_03792 at 4006.925 kb on - strand, within ECD_03792 at 4006.955 kb on - strand, within ECD_03792 at 4006.979 kb on - strand, within ECD_03792 at 4007.058 kb on - strand, within ECD_03792 at 4007.237 kb on + strand, within ECD_03792 at 4007.270 kb on + strand, within ECD_03792 at 4007.333 kb on - strand at 4007.333 kb on - strand at 4007.335 kb on + strand at 4007.335 kb on + strand at 4007.336 kb on - strand at 4007.339 kb on + strand at 4007.340 kb on - strand at 4007.455 kb on - strand at 4007.455 kb on - strand at 4007.455 kb on - strand at 4007.548 kb on + strand, within ECD_03793 at 4007.549 kb on - strand, within ECD_03793 at 4007.549 kb on - strand, within ECD_03793 at 4007.549 kb on - strand, within ECD_03793 at 4007.549 kb on - strand, within ECD_03793 at 4007.549 kb on - strand, within ECD_03793 at 4007.549 kb on - strand, within ECD_03793 at 4007.552 kb on + strand, within ECD_03793 at 4007.552 kb on + strand, within ECD_03793 at 4007.553 kb on - strand, within ECD_03793 at 4007.553 kb on - strand, within ECD_03793 at 4007.582 kb on + strand, within ECD_03793 at 4007.582 kb on + strand, within ECD_03793 at 4007.582 kb on + strand, within ECD_03793 at 4007.583 kb on - strand, within ECD_03793 at 4007.583 kb on - strand, within ECD_03793 at 4007.621 kb on + strand, within ECD_03793 at 4007.622 kb on - strand, within ECD_03793 at 4007.798 kb on + strand, within ECD_03793 at 4007.798 kb on + strand, within ECD_03793 at 4007.798 kb on + strand, within ECD_03793 at 4007.799 kb on - strand, within ECD_03793 at 4007.799 kb on - strand, within ECD_03793 at 4007.799 kb on - strand, within ECD_03793 at 4007.799 kb on - strand, within ECD_03793 at 4007.799 kb on - strand, within ECD_03793 at 4007.799 kb on - strand, within ECD_03793 at 4007.816 kb on + strand, within ECD_03793 at 4007.816 kb on + strand, within ECD_03793 at 4007.816 kb on + strand, within ECD_03793 at 4007.817 kb on - strand, within ECD_03793 at 4007.817 kb on - strand, within ECD_03793 at 4007.817 kb on - strand, within ECD_03793 at 4007.817 kb on - strand, within ECD_03793 at 4007.817 kb on - strand, within ECD_03793 at 4007.817 kb on - strand, within ECD_03793 at 4008.057 kb on + strand, within ECD_03793 at 4008.058 kb on - strand, within ECD_03793 at 4008.087 kb on + strand, within ECD_03793 at 4008.088 kb on - strand, within ECD_03793 at 4008.120 kb on + strand, within ECD_03793 at 4008.121 kb on - strand, within ECD_03793 at 4008.121 kb on - strand, within ECD_03793 at 4008.180 kb on - strand, within ECD_03793 at 4008.186 kb on + strand, within ECD_03793 at 4008.187 kb on - strand, within ECD_03793 at 4008.190 kb on - strand, within ECD_03793 at 4008.205 kb on - strand, within ECD_03793 at 4008.243 kb on + strand, within ECD_03793 at 4008.254 kb on + strand, within ECD_03793 at 4008.255 kb on - strand, within ECD_03793 at 4008.255 kb on - strand, within ECD_03793 at 4008.257 kb on + strand, within ECD_03793 at 4008.257 kb on + strand, within ECD_03793 at 4008.257 kb on + strand, within ECD_03793 at 4008.278 kb on - strand, within ECD_03793 at 4008.361 kb on + strand at 4008.380 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 4,005,551 - +0.7 4,005,601 + +0.3 4,005,601 + -0.2 4,005,601 + -0.0 4,005,601 + +0.5 4,005,622 - -0.6 4,005,665 + +0.9 4,005,668 + -2.4 4,005,668 + +0.8 4,005,668 + -2.9 4,005,668 + +0.2 4,005,669 - -0.2 4,005,669 - +0.8 4,005,672 + +0.8 4,005,672 + -0.1 4,005,713 + +0.2 4,005,820 + ECD_03791 0.19 -0.5 4,005,822 + ECD_03791 0.20 +1.4 4,005,874 + ECD_03791 0.26 +0.9 4,005,883 - ECD_03791 0.27 +0.1 4,006,016 + ECD_03791 0.43 -1.4 4,006,017 - ECD_03791 0.43 +0.5 4,006,076 + ECD_03791 0.50 -1.1 4,006,107 + ECD_03791 0.54 -0.2 4,006,107 + ECD_03791 0.54 +1.1 4,006,108 - ECD_03791 0.54 +0.8 4,006,116 - ECD_03791 0.55 +0.6 4,006,132 - ECD_03791 0.57 +0.8 4,006,268 + ECD_03791 0.73 +0.3 4,006,269 - ECD_03791 0.73 -0.9 4,006,269 - ECD_03791 0.73 +0.5 4,006,282 - ECD_03791 0.75 +0.2 4,006,352 + ECD_03791 0.83 +0.4 4,006,352 + ECD_03791 0.83 +0.3 4,006,352 + ECD_03791 0.83 -0.9 4,006,444 - +0.3 4,006,461 + +0.8 4,006,462 - -0.4 4,006,513 - -0.3 4,006,534 + -0.2 4,006,581 + ECD_03792 0.11 -0.1 4,006,669 + ECD_03792 0.20 +0.2 4,006,669 + ECD_03792 0.20 +0.2 4,006,669 + ECD_03792 0.20 +0.9 4,006,669 + ECD_03792 0.20 +0.2 4,006,669 + ECD_03792 0.20 -0.2 4,006,669 + ECD_03792 0.20 -0.2 4,006,669 + ECD_03792 0.20 +0.9 4,006,669 + ECD_03792 0.20 -0.3 4,006,670 - ECD_03792 0.20 -1.1 4,006,670 - ECD_03792 0.20 +0.4 4,006,670 - ECD_03792 0.20 -0.9 4,006,670 - ECD_03792 0.20 -0.7 4,006,670 - ECD_03792 0.20 +0.6 4,006,670 - ECD_03792 0.20 +0.8 4,006,670 - ECD_03792 0.20 -1.4 4,006,670 - ECD_03792 0.20 -2.4 4,006,722 + ECD_03792 0.26 -0.3 4,006,722 + ECD_03792 0.26 +1.1 4,006,722 + ECD_03792 0.26 -0.8 4,006,723 - ECD_03792 0.26 -0.5 4,006,723 - ECD_03792 0.26 +1.3 4,006,767 - ECD_03792 0.31 -0.1 4,006,794 - ECD_03792 0.34 +1.4 4,006,828 + ECD_03792 0.37 +0.7 4,006,828 + ECD_03792 0.37 -0.7 4,006,828 + ECD_03792 0.37 +0.9 4,006,832 + ECD_03792 0.38 +0.0 4,006,833 - ECD_03792 0.38 -1.1 4,006,889 - ECD_03792 0.44 +0.8 4,006,920 + ECD_03792 0.47 -0.1 4,006,925 - ECD_03792 0.48 +0.8 4,006,955 - ECD_03792 0.51 +0.6 4,006,979 - ECD_03792 0.53 +1.5 4,007,058 - ECD_03792 0.62 +1.0 4,007,237 + ECD_03792 0.81 +0.4 4,007,270 + ECD_03792 0.84 -0.0 4,007,333 - +1.5 4,007,333 - -2.7 4,007,335 + +0.8 4,007,335 + -2.0 4,007,336 - -0.3 4,007,339 + -0.3 4,007,340 - -0.8 4,007,455 - +0.5 4,007,455 - +0.7 4,007,455 - +0.5 4,007,548 + ECD_03793 0.13 +0.8 4,007,549 - ECD_03793 0.13 +0.0 4,007,549 - ECD_03793 0.13 +0.9 4,007,549 - ECD_03793 0.13 -0.1 4,007,549 - ECD_03793 0.13 +0.7 4,007,549 - ECD_03793 0.13 -0.5 4,007,549 - ECD_03793 0.13 +1.0 4,007,552 + ECD_03793 0.13 -0.3 4,007,552 + ECD_03793 0.13 -1.1 4,007,553 - ECD_03793 0.14 +0.7 4,007,553 - ECD_03793 0.14 +1.0 4,007,582 + ECD_03793 0.16 -1.2 4,007,582 + ECD_03793 0.16 +0.9 4,007,582 + ECD_03793 0.16 -0.7 4,007,583 - ECD_03793 0.16 +0.4 4,007,583 - ECD_03793 0.16 -0.8 4,007,621 + ECD_03793 0.20 -0.4 4,007,622 - ECD_03793 0.20 +0.4 4,007,798 + ECD_03793 0.37 -1.4 4,007,798 + ECD_03793 0.37 -2.0 4,007,798 + ECD_03793 0.37 +0.8 4,007,799 - ECD_03793 0.37 -1.8 4,007,799 - ECD_03793 0.37 -0.3 4,007,799 - ECD_03793 0.37 +0.1 4,007,799 - ECD_03793 0.37 +0.9 4,007,799 - ECD_03793 0.37 -0.8 4,007,799 - ECD_03793 0.37 +0.0 4,007,816 + ECD_03793 0.39 +0.1 4,007,816 + ECD_03793 0.39 +0.7 4,007,816 + ECD_03793 0.39 +1.1 4,007,817 - ECD_03793 0.39 +0.4 4,007,817 - ECD_03793 0.39 +0.1 4,007,817 - ECD_03793 0.39 +0.2 4,007,817 - ECD_03793 0.39 -0.1 4,007,817 - ECD_03793 0.39 +1.0 4,007,817 - ECD_03793 0.39 -0.5 4,008,057 + ECD_03793 0.62 +0.7 4,008,058 - ECD_03793 0.62 +1.0 4,008,087 + ECD_03793 0.65 -2.3 4,008,088 - ECD_03793 0.65 +0.9 4,008,120 + ECD_03793 0.68 +1.3 4,008,121 - ECD_03793 0.68 +0.6 4,008,121 - ECD_03793 0.68 +0.7 4,008,180 - ECD_03793 0.74 -1.1 4,008,186 + ECD_03793 0.75 +0.5 4,008,187 - ECD_03793 0.75 +0.9 4,008,190 - ECD_03793 0.75 +1.0 4,008,205 - ECD_03793 0.77 +1.0 4,008,243 + ECD_03793 0.80 +0.1 4,008,254 + ECD_03793 0.81 -2.1 4,008,255 - ECD_03793 0.81 -0.2 4,008,255 - ECD_03793 0.81 +0.1 4,008,257 + ECD_03793 0.82 +2.3 4,008,257 + ECD_03793 0.82 +1.5 4,008,257 + ECD_03793 0.82 +1.2 4,008,278 - ECD_03793 0.84 -2.5 4,008,361 + +1.2 4,008,380 + -0.3
Or see this region's nucleotide sequence