Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03680 and ECD_03681 are separated by 386 nucleotides ECD_03681 and ECD_03682 are separated by 39 nucleotides ECD_03682 and ECD_03683 overlap by 210 nucleotides ECD_03683 and ECD_03684 are separated by 451 nucleotides
ECD_03680: ECD_03680 - hydroxymethylbilane synthase, at 3,880,095 to 3,881,036
_03680
ECD_03681: ECD_03681 - adenylate cyclase, at 3,881,423 to 3,883,969
_03681
ECD_03682: ECD_03682 - iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein, at 3,884,009 to 3,884,329
_03682
ECD_03683: ECD_03683 - hypothetical protein, at 3,884,120 to 3,884,347
_03683
ECD_03684: ECD_03684 - putative lipoprotein, at 3,884,799 to 3,885,002
_03684
Position (kb)
3881
3882
3883
3884 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3881.044 kb on - strand at 3881.053 kb on - strand at 3881.113 kb on - strand at 3881.113 kb on - strand at 3881.132 kb on - strand at 3881.179 kb on - strand at 3881.179 kb on - strand at 3881.179 kb on - strand at 3881.209 kb on + strand at 3881.209 kb on + strand at 3881.210 kb on - strand at 3881.217 kb on + strand at 3881.217 kb on + strand at 3881.217 kb on + strand at 3881.217 kb on + strand at 3881.217 kb on + strand at 3881.218 kb on - strand at 3881.218 kb on - strand at 3881.218 kb on - strand at 3881.218 kb on - strand at 3881.221 kb on + strand at 3881.221 kb on + strand at 3881.221 kb on + strand at 3881.222 kb on - strand at 3881.236 kb on + strand at 3881.340 kb on + strand at 3881.417 kb on + strand at 3881.426 kb on + strand at 3881.426 kb on + strand at 3881.432 kb on + strand at 3881.434 kb on + strand at 3882.682 kb on + strand, within ECD_03681 at 3882.682 kb on + strand, within ECD_03681 at 3882.682 kb on + strand, within ECD_03681 at 3882.682 kb on + strand, within ECD_03681 at 3882.776 kb on - strand, within ECD_03681 at 3882.779 kb on + strand, within ECD_03681 at 3882.780 kb on - strand, within ECD_03681 at 3882.821 kb on + strand, within ECD_03681 at 3882.821 kb on + strand, within ECD_03681 at 3882.822 kb on - strand, within ECD_03681 at 3882.822 kb on - strand, within ECD_03681 at 3882.822 kb on - strand, within ECD_03681 at 3882.872 kb on + strand, within ECD_03681 at 3882.873 kb on - strand, within ECD_03681 at 3882.944 kb on + strand, within ECD_03681 at 3882.944 kb on + strand, within ECD_03681 at 3882.945 kb on - strand, within ECD_03681 at 3882.945 kb on - strand, within ECD_03681 at 3882.946 kb on + strand, within ECD_03681 at 3882.946 kb on + strand, within ECD_03681 at 3882.946 kb on + strand, within ECD_03681 at 3882.949 kb on + strand, within ECD_03681 at 3883.052 kb on + strand, within ECD_03681 at 3883.100 kb on + strand, within ECD_03681 at 3883.101 kb on - strand, within ECD_03681 at 3883.240 kb on + strand, within ECD_03681 at 3883.346 kb on + strand, within ECD_03681 at 3883.405 kb on + strand, within ECD_03681 at 3883.506 kb on + strand, within ECD_03681 at 3883.507 kb on - strand, within ECD_03681 at 3883.542 kb on - strand, within ECD_03681 at 3883.549 kb on + strand, within ECD_03681 at 3883.549 kb on + strand, within ECD_03681 at 3883.688 kb on - strand, within ECD_03681 at 3883.694 kb on + strand, within ECD_03681 at 3883.694 kb on + strand, within ECD_03681 at 3883.694 kb on + strand, within ECD_03681 at 3883.695 kb on - strand, within ECD_03681 at 3883.695 kb on - strand, within ECD_03681 at 3883.695 kb on - strand, within ECD_03681 at 3883.727 kb on + strand at 3883.727 kb on + strand at 3883.728 kb on - strand at 3883.728 kb on - strand at 3883.728 kb on - strand at 3883.728 kb on - strand at 3883.781 kb on + strand at 3883.782 kb on - strand at 3883.809 kb on - strand at 3883.848 kb on - strand at 3883.950 kb on + strand at 3883.950 kb on + strand at 3883.951 kb on - strand at 3883.951 kb on - strand at 3883.951 kb on - strand at 3884.084 kb on - strand, within ECD_03682 at 3884.180 kb on - strand at 3884.207 kb on - strand at 3884.335 kb on + strand at 3884.335 kb on + strand at 3884.362 kb on + strand at 3884.363 kb on - strand at 3884.442 kb on + strand at 3884.442 kb on + strand at 3884.442 kb on + strand at 3884.443 kb on - strand at 3884.443 kb on - strand at 3884.443 kb on - strand at 3884.445 kb on + strand at 3884.445 kb on + strand at 3884.446 kb on - strand at 3884.446 kb on - strand at 3884.446 kb on - strand at 3884.451 kb on + strand at 3884.451 kb on + strand at 3884.452 kb on - strand at 3884.452 kb on - strand at 3884.452 kb on - strand at 3884.452 kb on - strand at 3884.452 kb on - strand at 3884.452 kb on - strand at 3884.453 kb on + strand at 3884.454 kb on - strand at 3884.455 kb on + strand at 3884.456 kb on - strand at 3884.456 kb on - strand at 3884.490 kb on - strand at 3884.520 kb on + strand at 3884.521 kb on - strand at 3884.523 kb on + strand at 3884.523 kb on + strand at 3884.523 kb on + strand at 3884.610 kb on + strand at 3884.611 kb on - strand at 3884.647 kb on - strand at 3884.659 kb on + strand at 3884.659 kb on + strand at 3884.660 kb on - strand at 3884.674 kb on - strand at 3884.682 kb on + strand at 3884.683 kb on - strand at 3884.760 kb on + strand at 3884.760 kb on + strand at 3884.761 kb on - strand at 3884.813 kb on + strand at 3884.813 kb on + strand at 3884.827 kb on + strand, within ECD_03684 at 3884.827 kb on + strand, within ECD_03684 at 3884.827 kb on + strand, within ECD_03684 at 3884.830 kb on + strand, within ECD_03684 at 3884.834 kb on + strand, within ECD_03684 at 3884.834 kb on + strand, within ECD_03684 at 3884.834 kb on + strand, within ECD_03684 at 3884.894 kb on + strand, within ECD_03684 at 3884.895 kb on - strand, within ECD_03684
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,881,044 - -1.2 3,881,053 - +0.4 3,881,113 - -0.5 3,881,113 - +0.8 3,881,132 - -2.4 3,881,179 - +1.1 3,881,179 - -0.3 3,881,179 - -0.7 3,881,209 + +2.2 3,881,209 + +0.7 3,881,210 - -1.0 3,881,217 + +0.6 3,881,217 + +0.6 3,881,217 + +0.6 3,881,217 + -0.8 3,881,217 + -0.3 3,881,218 - -0.1 3,881,218 - -0.1 3,881,218 - -0.7 3,881,218 - -1.0 3,881,221 + -1.7 3,881,221 + -1.1 3,881,221 + -2.2 3,881,222 - +0.1 3,881,236 + -0.0 3,881,340 + -1.4 3,881,417 + -2.0 3,881,426 + -0.9 3,881,426 + -1.2 3,881,432 + -2.3 3,881,434 + +0.3 3,882,682 + ECD_03681 0.49 +0.7 3,882,682 + ECD_03681 0.49 -1.8 3,882,682 + ECD_03681 0.49 +0.2 3,882,682 + ECD_03681 0.49 -1.3 3,882,776 - ECD_03681 0.53 -2.1 3,882,779 + ECD_03681 0.53 -2.5 3,882,780 - ECD_03681 0.53 +0.6 3,882,821 + ECD_03681 0.55 +0.0 3,882,821 + ECD_03681 0.55 +0.7 3,882,822 - ECD_03681 0.55 +0.6 3,882,822 - ECD_03681 0.55 +0.1 3,882,822 - ECD_03681 0.55 -1.9 3,882,872 + ECD_03681 0.57 -3.4 3,882,873 - ECD_03681 0.57 +0.2 3,882,944 + ECD_03681 0.60 -2.0 3,882,944 + ECD_03681 0.60 -1.7 3,882,945 - ECD_03681 0.60 -1.3 3,882,945 - ECD_03681 0.60 -0.4 3,882,946 + ECD_03681 0.60 -2.3 3,882,946 + ECD_03681 0.60 -2.9 3,882,946 + ECD_03681 0.60 +0.4 3,882,949 + ECD_03681 0.60 -2.5 3,883,052 + ECD_03681 0.64 -1.6 3,883,100 + ECD_03681 0.66 -2.1 3,883,101 - ECD_03681 0.66 -1.7 3,883,240 + ECD_03681 0.71 -1.9 3,883,346 + ECD_03681 0.76 -1.9 3,883,405 + ECD_03681 0.78 -2.5 3,883,506 + ECD_03681 0.82 -0.4 3,883,507 - ECD_03681 0.82 -0.8 3,883,542 - ECD_03681 0.83 -1.5 3,883,549 + ECD_03681 0.83 -2.0 3,883,549 + ECD_03681 0.83 -1.0 3,883,688 - ECD_03681 0.89 -1.0 3,883,694 + ECD_03681 0.89 +0.1 3,883,694 + ECD_03681 0.89 -1.2 3,883,694 + ECD_03681 0.89 -0.7 3,883,695 - ECD_03681 0.89 -0.8 3,883,695 - ECD_03681 0.89 +0.7 3,883,695 - ECD_03681 0.89 -1.5 3,883,727 + -0.9 3,883,727 + +2.9 3,883,728 - -1.2 3,883,728 - -0.2 3,883,728 - -1.4 3,883,728 - -0.3 3,883,781 + -0.6 3,883,782 - -0.1 3,883,809 - -1.6 3,883,848 - -0.7 3,883,950 + -0.5 3,883,950 + -0.7 3,883,951 - -0.4 3,883,951 - +2.0 3,883,951 - -2.0 3,884,084 - ECD_03682 0.23 -2.8 3,884,180 - -1.1 3,884,207 - -0.7 3,884,335 + -1.5 3,884,335 + -0.9 3,884,362 + -0.1 3,884,363 - -1.4 3,884,442 + +1.0 3,884,442 + -1.2 3,884,442 + +0.2 3,884,443 - +1.5 3,884,443 - -1.3 3,884,443 - +0.3 3,884,445 + +0.8 3,884,445 + +0.2 3,884,446 - -0.6 3,884,446 - -0.3 3,884,446 - +0.8 3,884,451 + +0.1 3,884,451 + -0.6 3,884,452 - +0.3 3,884,452 - +1.4 3,884,452 - +0.7 3,884,452 - +1.0 3,884,452 - +1.6 3,884,452 - -0.3 3,884,453 + +0.2 3,884,454 - +0.2 3,884,455 + -0.2 3,884,456 - +0.1 3,884,456 - +0.1 3,884,490 - +0.2 3,884,520 + -0.8 3,884,521 - +2.6 3,884,523 + -0.7 3,884,523 + -1.3 3,884,523 + -2.6 3,884,610 + -1.2 3,884,611 - +1.2 3,884,647 - -0.1 3,884,659 + +1.6 3,884,659 + +2.1 3,884,660 - +0.4 3,884,674 - -0.0 3,884,682 + -3.0 3,884,683 - +0.1 3,884,760 + -0.6 3,884,760 + -1.4 3,884,761 - -1.7 3,884,813 + -0.4 3,884,813 + +1.1 3,884,827 + ECD_03684 0.14 +0.5 3,884,827 + ECD_03684 0.14 +0.3 3,884,827 + ECD_03684 0.14 +0.7 3,884,830 + ECD_03684 0.15 -0.7 3,884,834 + ECD_03684 0.17 +0.1 3,884,834 + ECD_03684 0.17 -0.1 3,884,834 + ECD_03684 0.17 +0.0 3,884,894 + ECD_03684 0.47 -3.0 3,884,895 - ECD_03684 0.47 -2.3
Or see this region's nucleotide sequence