Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03651 and ECD_03652 are separated by 149 nucleotides ECD_03652 and ECD_03653 are separated by 86 nucleotides ECD_03653 and ECD_03654 are separated by 198 nucleotides
ECD_03651: ECD_03651 - transcriptional activator of ilvC; autorepressor, at 3,847,169 to 3,848,062
_03651
ECD_03652: ECD_03652 - ketol-acid reductoisomerase, NAD(P)-binding, at 3,848,212 to 3,849,687
_03652
ECD_03653: ECD_03653 - peptidyl-prolyl cis-trans isomerase C (rotamase C), at 3,849,774 to 3,850,055
_03653
ECD_03654: ECD_03654 - hypothetical protein, at 3,850,254 to 3,850,529
_03654
Position (kb)
3848
3849
3850 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3847.480 kb on + strand, within ECD_03651 at 3847.484 kb on - strand, within ECD_03651 at 3847.566 kb on - strand, within ECD_03651 at 3847.687 kb on + strand, within ECD_03651 at 3847.687 kb on + strand, within ECD_03651 at 3847.690 kb on + strand, within ECD_03651 at 3847.690 kb on + strand, within ECD_03651 at 3847.691 kb on - strand, within ECD_03651 at 3847.691 kb on - strand, within ECD_03651 at 3847.691 kb on - strand, within ECD_03651 at 3847.697 kb on - strand, within ECD_03651 at 3847.697 kb on - strand, within ECD_03651 at 3847.755 kb on + strand, within ECD_03651 at 3847.780 kb on + strand, within ECD_03651 at 3847.781 kb on - strand, within ECD_03651 at 3847.781 kb on - strand, within ECD_03651 at 3847.781 kb on - strand, within ECD_03651 at 3847.784 kb on + strand, within ECD_03651 at 3847.784 kb on + strand, within ECD_03651 at 3847.785 kb on - strand, within ECD_03651 at 3847.785 kb on - strand, within ECD_03651 at 3847.785 kb on - strand, within ECD_03651 at 3848.146 kb on + strand at 3848.146 kb on + strand at 3848.146 kb on + strand at 3848.146 kb on + strand at 3848.147 kb on - strand at 3848.147 kb on - strand at 3848.147 kb on - strand at 3848.147 kb on - strand at 3848.147 kb on - strand at 3848.148 kb on + strand at 3848.149 kb on - strand at 3848.183 kb on + strand at 3848.183 kb on + strand at 3848.183 kb on + strand at 3848.217 kb on + strand at 3848.221 kb on + strand at 3848.229 kb on + strand at 3848.229 kb on + strand at 3848.311 kb on + strand at 3848.311 kb on + strand at 3848.404 kb on + strand, within ECD_03652 at 3848.485 kb on + strand, within ECD_03652 at 3848.552 kb on + strand, within ECD_03652 at 3848.552 kb on + strand, within ECD_03652 at 3848.643 kb on + strand, within ECD_03652 at 3848.643 kb on + strand, within ECD_03652 at 3848.649 kb on + strand, within ECD_03652 at 3848.649 kb on + strand, within ECD_03652 at 3848.704 kb on + strand, within ECD_03652 at 3848.704 kb on + strand, within ECD_03652 at 3848.705 kb on - strand, within ECD_03652 at 3848.956 kb on + strand, within ECD_03652 at 3848.956 kb on + strand, within ECD_03652 at 3849.067 kb on + strand, within ECD_03652 at 3849.120 kb on + strand, within ECD_03652 at 3849.120 kb on + strand, within ECD_03652 at 3849.120 kb on + strand, within ECD_03652 at 3849.183 kb on + strand, within ECD_03652 at 3849.244 kb on + strand, within ECD_03652 at 3849.271 kb on + strand, within ECD_03652 at 3849.271 kb on + strand, within ECD_03652 at 3849.271 kb on + strand, within ECD_03652 at 3849.279 kb on + strand, within ECD_03652 at 3849.287 kb on + strand, within ECD_03652 at 3849.370 kb on + strand, within ECD_03652 at 3849.370 kb on + strand, within ECD_03652 at 3849.370 kb on + strand, within ECD_03652 at 3849.370 kb on + strand, within ECD_03652 at 3849.373 kb on + strand, within ECD_03652 at 3849.466 kb on + strand, within ECD_03652 at 3849.471 kb on + strand, within ECD_03652 at 3849.475 kb on + strand, within ECD_03652 at 3849.475 kb on + strand, within ECD_03652 at 3849.475 kb on + strand, within ECD_03652 at 3849.475 kb on + strand, within ECD_03652 at 3849.475 kb on + strand, within ECD_03652 at 3849.475 kb on + strand, within ECD_03652 at 3849.475 kb on + strand, within ECD_03652 at 3849.475 kb on + strand, within ECD_03652 at 3849.475 kb on + strand, within ECD_03652 at 3849.475 kb on + strand, within ECD_03652 at 3849.476 kb on - strand, within ECD_03652 at 3849.487 kb on + strand, within ECD_03652 at 3849.487 kb on + strand, within ECD_03652 at 3849.629 kb on + strand at 3849.629 kb on + strand at 3849.629 kb on + strand at 3849.629 kb on + strand at 3849.634 kb on - strand at 3849.649 kb on + strand at 3849.651 kb on + strand at 3849.651 kb on + strand at 3849.652 kb on - strand at 3849.652 kb on - strand at 3849.652 kb on - strand at 3849.652 kb on - strand at 3849.660 kb on + strand at 3849.669 kb on + strand at 3849.669 kb on + strand at 3849.670 kb on - strand at 3849.670 kb on - strand at 3849.670 kb on - strand at 3849.773 kb on - strand at 3849.773 kb on - strand at 3849.775 kb on + strand at 3849.775 kb on + strand at 3849.775 kb on + strand at 3849.775 kb on + strand at 3849.776 kb on - strand at 3849.785 kb on - strand at 3849.794 kb on + strand at 3849.794 kb on + strand at 3849.866 kb on + strand, within ECD_03653 at 3849.906 kb on + strand, within ECD_03653 at 3849.981 kb on - strand, within ECD_03653 at 3850.020 kb on + strand, within ECD_03653 at 3850.074 kb on + strand at 3850.118 kb on + strand at 3850.143 kb on + strand at 3850.144 kb on - strand at 3850.147 kb on + strand at 3850.147 kb on + strand at 3850.147 kb on + strand at 3850.147 kb on + strand at 3850.147 kb on + strand at 3850.147 kb on + strand at 3850.147 kb on + strand at 3850.147 kb on + strand at 3850.147 kb on + strand at 3850.147 kb on + strand at 3850.147 kb on + strand at 3850.147 kb on + strand at 3850.147 kb on + strand at 3850.147 kb on + strand at 3850.147 kb on + strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.148 kb on - strand at 3850.150 kb on - strand at 3850.214 kb on - strand at 3850.302 kb on + strand, within ECD_03654 at 3850.302 kb on + strand, within ECD_03654 at 3850.303 kb on - strand, within ECD_03654 at 3850.303 kb on - strand, within ECD_03654 at 3850.303 kb on - strand, within ECD_03654 at 3850.303 kb on - strand, within ECD_03654 at 3850.351 kb on + strand, within ECD_03654 at 3850.352 kb on - strand, within ECD_03654 at 3850.392 kb on + strand, within ECD_03654 at 3850.485 kb on + strand, within ECD_03654 at 3850.565 kb on + strand at 3850.565 kb on + strand at 3850.566 kb on - strand at 3850.566 kb on - strand at 3850.605 kb on + strand at 3850.606 kb on - strand at 3850.606 kb on - strand at 3850.608 kb on + strand at 3850.608 kb on + strand at 3850.608 kb on + strand at 3850.608 kb on + strand at 3850.608 kb on + strand at 3850.609 kb on - strand at 3850.609 kb on - strand at 3850.609 kb on - strand at 3850.609 kb on - strand at 3850.645 kb on - strand at 3850.648 kb on + strand at 3850.649 kb on - strand at 3850.649 kb on - strand at 3850.649 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,847,480 + ECD_03651 0.35 -0.2 3,847,484 - ECD_03651 0.35 -0.9 3,847,566 - ECD_03651 0.44 +0.5 3,847,687 + ECD_03651 0.58 -0.7 3,847,687 + ECD_03651 0.58 -0.5 3,847,690 + ECD_03651 0.58 -1.7 3,847,690 + ECD_03651 0.58 -0.1 3,847,691 - ECD_03651 0.58 +0.4 3,847,691 - ECD_03651 0.58 +1.3 3,847,691 - ECD_03651 0.58 +0.5 3,847,697 - ECD_03651 0.59 -1.9 3,847,697 - ECD_03651 0.59 -0.9 3,847,755 + ECD_03651 0.66 -0.1 3,847,780 + ECD_03651 0.68 +0.3 3,847,781 - ECD_03651 0.68 +0.1 3,847,781 - ECD_03651 0.68 +0.4 3,847,781 - ECD_03651 0.68 +0.3 3,847,784 + ECD_03651 0.69 +0.7 3,847,784 + ECD_03651 0.69 +0.2 3,847,785 - ECD_03651 0.69 -3.4 3,847,785 - ECD_03651 0.69 +1.8 3,847,785 - ECD_03651 0.69 +0.3 3,848,146 + +0.1 3,848,146 + -3.0 3,848,146 + -1.7 3,848,146 + -2.9 3,848,147 - +0.5 3,848,147 - +1.0 3,848,147 - -0.7 3,848,147 - -1.0 3,848,147 - +1.7 3,848,148 + -0.0 3,848,149 - +0.4 3,848,183 + +0.9 3,848,183 + +0.7 3,848,183 + +0.6 3,848,217 + +0.3 3,848,221 + +1.0 3,848,229 + +0.2 3,848,229 + +0.4 3,848,311 + +0.2 3,848,311 + +0.6 3,848,404 + ECD_03652 0.13 +0.6 3,848,485 + ECD_03652 0.18 +0.4 3,848,552 + ECD_03652 0.23 +0.7 3,848,552 + ECD_03652 0.23 -0.2 3,848,643 + ECD_03652 0.29 +0.5 3,848,643 + ECD_03652 0.29 +0.7 3,848,649 + ECD_03652 0.30 -0.3 3,848,649 + ECD_03652 0.30 +0.7 3,848,704 + ECD_03652 0.33 +1.7 3,848,704 + ECD_03652 0.33 -0.3 3,848,705 - ECD_03652 0.33 -1.3 3,848,956 + ECD_03652 0.50 +1.2 3,848,956 + ECD_03652 0.50 -1.0 3,849,067 + ECD_03652 0.58 +1.3 3,849,120 + ECD_03652 0.62 -1.5 3,849,120 + ECD_03652 0.62 +0.0 3,849,120 + ECD_03652 0.62 -0.4 3,849,183 + ECD_03652 0.66 +0.3 3,849,244 + ECD_03652 0.70 +0.5 3,849,271 + ECD_03652 0.72 +0.3 3,849,271 + ECD_03652 0.72 +0.8 3,849,271 + ECD_03652 0.72 -0.7 3,849,279 + ECD_03652 0.72 +1.1 3,849,287 + ECD_03652 0.73 -1.1 3,849,370 + ECD_03652 0.78 -0.3 3,849,370 + ECD_03652 0.78 +0.5 3,849,370 + ECD_03652 0.78 +0.6 3,849,370 + ECD_03652 0.78 +0.5 3,849,373 + ECD_03652 0.79 +0.3 3,849,466 + ECD_03652 0.85 +1.1 3,849,471 + ECD_03652 0.85 +0.9 3,849,475 + ECD_03652 0.86 +1.3 3,849,475 + ECD_03652 0.86 +0.2 3,849,475 + ECD_03652 0.86 -0.1 3,849,475 + ECD_03652 0.86 +0.9 3,849,475 + ECD_03652 0.86 +1.0 3,849,475 + ECD_03652 0.86 +1.4 3,849,475 + ECD_03652 0.86 +0.9 3,849,475 + ECD_03652 0.86 +1.1 3,849,475 + ECD_03652 0.86 +0.2 3,849,475 + ECD_03652 0.86 +0.1 3,849,476 - ECD_03652 0.86 -1.2 3,849,487 + ECD_03652 0.86 -0.1 3,849,487 + ECD_03652 0.86 +0.3 3,849,629 + -1.3 3,849,629 + +0.7 3,849,629 + +0.8 3,849,629 + +0.9 3,849,634 - -3.2 3,849,649 + -1.8 3,849,651 + -0.4 3,849,651 + +0.3 3,849,652 - -0.4 3,849,652 - -1.9 3,849,652 - -2.5 3,849,652 - +0.1 3,849,660 + -0.5 3,849,669 + -0.5 3,849,669 + -1.8 3,849,670 - -1.0 3,849,670 - -0.8 3,849,670 - -0.5 3,849,773 - -0.4 3,849,773 - -0.2 3,849,775 + -0.1 3,849,775 + -2.0 3,849,775 + -0.0 3,849,775 + -0.1 3,849,776 - +0.7 3,849,785 - +1.0 3,849,794 + -0.1 3,849,794 + -1.4 3,849,866 + ECD_03653 0.33 -1.7 3,849,906 + ECD_03653 0.47 +1.3 3,849,981 - ECD_03653 0.73 +0.5 3,850,020 + ECD_03653 0.87 -0.7 3,850,074 + +0.4 3,850,118 + -0.8 3,850,143 + -1.5 3,850,144 - +0.7 3,850,147 + -0.9 3,850,147 + +0.6 3,850,147 + +0.2 3,850,147 + -0.2 3,850,147 + -0.5 3,850,147 + -0.7 3,850,147 + +0.4 3,850,147 + +0.7 3,850,147 + -0.1 3,850,147 + +0.8 3,850,147 + +0.6 3,850,147 + -1.3 3,850,147 + +1.2 3,850,147 + -2.1 3,850,147 + -0.6 3,850,148 - -0.4 3,850,148 - -0.9 3,850,148 - +0.0 3,850,148 - -0.3 3,850,148 - -0.2 3,850,148 - -0.5 3,850,148 - +0.6 3,850,148 - +0.4 3,850,148 - +0.1 3,850,148 - +0.3 3,850,148 - -2.2 3,850,148 - +0.3 3,850,148 - -2.0 3,850,148 - +0.4 3,850,148 - -0.5 3,850,148 - -3.0 3,850,148 - +0.3 3,850,148 - -0.2 3,850,148 - +0.9 3,850,148 - +0.1 3,850,148 - -0.5 3,850,148 - -0.7 3,850,148 - -0.5 3,850,150 - +0.8 3,850,214 - +0.2 3,850,302 + ECD_03654 0.17 -0.5 3,850,302 + ECD_03654 0.17 +1.1 3,850,303 - ECD_03654 0.18 +0.7 3,850,303 - ECD_03654 0.18 +0.2 3,850,303 - ECD_03654 0.18 -1.4 3,850,303 - ECD_03654 0.18 +0.9 3,850,351 + ECD_03654 0.35 +0.3 3,850,352 - ECD_03654 0.36 -0.8 3,850,392 + ECD_03654 0.50 -0.7 3,850,485 + ECD_03654 0.84 -0.5 3,850,565 + -0.2 3,850,565 + -0.2 3,850,566 - +0.5 3,850,566 - -0.3 3,850,605 + -0.0 3,850,606 - -1.8 3,850,606 - +1.1 3,850,608 + -0.2 3,850,608 + -0.9 3,850,608 + -1.7 3,850,608 + -0.5 3,850,608 + -2.4 3,850,609 - +0.4 3,850,609 - +0.2 3,850,609 - -0.2 3,850,609 - +0.4 3,850,645 - +0.5 3,850,648 + +0.2 3,850,649 - -2.5 3,850,649 - -2.9 3,850,649 - -2.0
Or see this region's nucleotide sequence