Strain Fitness in Escherichia coli BL21 around ECD_03577

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03575 and ECD_03576 overlap by 4 nucleotidesECD_03576 and ECD_03577 overlap by 17 nucleotidesECD_03577 and ECD_03578 overlap by 4 nucleotidesECD_03578 and ECD_03579 are separated by 277 nucleotides ECD_03575: ECD_03575 - D-galactonate dehydratase, at 3,760,646 to 3,761,794 _03575 ECD_03576: ECD_03576 - 2-oxo-3-deoxygalactonate 6-phosphate aldolase, at 3,761,791 to 3,762,408 _03576 ECD_03577: ECD_03577 - 2-oxo-3-deoxygalactonate kinase, at 3,762,392 to 3,763,270 _03577 ECD_03578: ECD_03578 - D-galactonate catabolism operon transcriptional repressor, at 3,763,267 to 3,763,956 _03578 ECD_03579: ECD_03579 - putative lipoprotein, at 3,764,234 to 3,764,890 _03579 Position (kb) 3762 3763 3764Strain fitness (log2 ratio) -3 -2 -1 0 1at 3761.445 kb on + strand, within ECD_03575at 3761.445 kb on + strand, within ECD_03575at 3761.510 kb on - strand, within ECD_03575at 3761.510 kb on - strand, within ECD_03575at 3761.578 kb on - strand, within ECD_03575at 3761.592 kb on + strand, within ECD_03575at 3761.592 kb on + strand, within ECD_03575at 3761.593 kb on - strand, within ECD_03575at 3761.593 kb on - strand, within ECD_03575at 3761.607 kb on - strand, within ECD_03575at 3761.643 kb on + strand, within ECD_03575at 3761.770 kb on - strandat 3761.770 kb on - strandat 3761.776 kb on + strandat 3761.912 kb on - strand, within ECD_03576at 3761.999 kb on + strand, within ECD_03576at 3761.999 kb on + strand, within ECD_03576at 3762.000 kb on - strand, within ECD_03576at 3762.000 kb on - strand, within ECD_03576at 3762.214 kb on - strand, within ECD_03576at 3762.214 kb on - strand, within ECD_03576at 3762.360 kb on + strandat 3762.422 kb on + strandat 3762.423 kb on - strandat 3762.423 kb on - strandat 3762.425 kb on - strandat 3762.552 kb on + strand, within ECD_03577at 3762.552 kb on + strand, within ECD_03577at 3762.552 kb on + strand, within ECD_03577at 3762.553 kb on - strand, within ECD_03577at 3762.553 kb on - strand, within ECD_03577at 3762.553 kb on - strand, within ECD_03577at 3762.553 kb on - strand, within ECD_03577at 3762.672 kb on - strand, within ECD_03577at 3762.685 kb on + strand, within ECD_03577at 3762.685 kb on + strand, within ECD_03577at 3762.686 kb on - strand, within ECD_03577at 3762.686 kb on - strand, within ECD_03577at 3762.773 kb on + strand, within ECD_03577at 3762.774 kb on - strand, within ECD_03577at 3762.774 kb on - strand, within ECD_03577at 3762.774 kb on - strand, within ECD_03577at 3762.868 kb on - strand, within ECD_03577at 3762.868 kb on - strand, within ECD_03577at 3762.977 kb on - strand, within ECD_03577at 3762.996 kb on - strand, within ECD_03577at 3763.009 kb on + strand, within ECD_03577at 3763.034 kb on + strand, within ECD_03577at 3763.096 kb on + strand, within ECD_03577at 3763.212 kb on + strandat 3763.257 kb on + strandat 3763.258 kb on - strandat 3763.294 kb on - strandat 3763.312 kb on - strandat 3763.371 kb on + strand, within ECD_03578at 3763.372 kb on - strand, within ECD_03578at 3763.372 kb on - strand, within ECD_03578at 3763.372 kb on - strand, within ECD_03578at 3763.372 kb on - strand, within ECD_03578at 3763.461 kb on + strand, within ECD_03578at 3763.462 kb on - strand, within ECD_03578at 3763.462 kb on - strand, within ECD_03578at 3763.472 kb on - strand, within ECD_03578at 3763.472 kb on - strand, within ECD_03578at 3763.675 kb on - strand, within ECD_03578at 3763.688 kb on + strand, within ECD_03578at 3763.689 kb on - strand, within ECD_03578at 3763.714 kb on + strand, within ECD_03578at 3763.715 kb on - strand, within ECD_03578at 3763.731 kb on - strand, within ECD_03578at 3763.888 kb on + strandat 3763.892 kb on + strandat 3763.892 kb on + strandat 3763.892 kb on + strandat 3763.892 kb on + strandat 3763.893 kb on - strandat 3763.893 kb on - strandat 3763.893 kb on - strandat 3763.924 kb on - strandat 3763.944 kb on + strandat 3763.945 kb on - strandat 3763.977 kb on - strandat 3763.977 kb on - strandat 3763.977 kb on - strandat 3763.977 kb on - strandat 3763.988 kb on + strandat 3763.988 kb on + strandat 3763.988 kb on + strandat 3763.988 kb on + strandat 3764.009 kb on + strandat 3764.194 kb on - strandat 3764.209 kb on + strandat 3764.210 kb on - strandat 3764.214 kb on - strandat 3764.229 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,761,445 + ECD_03575 0.70 +0.8
3,761,445 + ECD_03575 0.70 +0.2
3,761,510 - ECD_03575 0.75 +0.3
3,761,510 - ECD_03575 0.75 -0.1
3,761,578 - ECD_03575 0.81 +1.3
3,761,592 + ECD_03575 0.82 -3.6
3,761,592 + ECD_03575 0.82 -1.9
3,761,593 - ECD_03575 0.82 +1.6
3,761,593 - ECD_03575 0.82 -1.6
3,761,607 - ECD_03575 0.84 -2.8
3,761,643 + ECD_03575 0.87 -0.5
3,761,770 - +0.2
3,761,770 - +0.1
3,761,776 + +1.3
3,761,912 - ECD_03576 0.20 -0.4
3,761,999 + ECD_03576 0.34 +0.7
3,761,999 + ECD_03576 0.34 +0.4
3,762,000 - ECD_03576 0.34 -0.7
3,762,000 - ECD_03576 0.34 -0.3
3,762,214 - ECD_03576 0.68 -0.8
3,762,214 - ECD_03576 0.68 -1.4
3,762,360 + +0.7
3,762,422 + +1.6
3,762,423 - +0.5
3,762,423 - +0.2
3,762,425 - +0.8
3,762,552 + ECD_03577 0.18 -0.3
3,762,552 + ECD_03577 0.18 -0.2
3,762,552 + ECD_03577 0.18 -0.5
3,762,553 - ECD_03577 0.18 +0.3
3,762,553 - ECD_03577 0.18 +0.8
3,762,553 - ECD_03577 0.18 -2.5
3,762,553 - ECD_03577 0.18 +0.6
3,762,672 - ECD_03577 0.32 -0.9
3,762,685 + ECD_03577 0.33 +0.5
3,762,685 + ECD_03577 0.33 +0.0
3,762,686 - ECD_03577 0.33 +0.5
3,762,686 - ECD_03577 0.33 -0.2
3,762,773 + ECD_03577 0.43 -2.6
3,762,774 - ECD_03577 0.43 -1.2
3,762,774 - ECD_03577 0.43 -0.6
3,762,774 - ECD_03577 0.43 -0.2
3,762,868 - ECD_03577 0.54 -1.9
3,762,868 - ECD_03577 0.54 -2.8
3,762,977 - ECD_03577 0.67 -0.6
3,762,996 - ECD_03577 0.69 +0.8
3,763,009 + ECD_03577 0.70 +0.0
3,763,034 + ECD_03577 0.73 -0.6
3,763,096 + ECD_03577 0.80 +0.4
3,763,212 + +1.2
3,763,257 + -0.1
3,763,258 - -1.8
3,763,294 - -1.8
3,763,312 - -0.9
3,763,371 + ECD_03578 0.15 -0.3
3,763,372 - ECD_03578 0.15 +0.8
3,763,372 - ECD_03578 0.15 +0.2
3,763,372 - ECD_03578 0.15 -2.3
3,763,372 - ECD_03578 0.15 -0.4
3,763,461 + ECD_03578 0.28 -2.2
3,763,462 - ECD_03578 0.28 +0.0
3,763,462 - ECD_03578 0.28 +0.1
3,763,472 - ECD_03578 0.30 -0.0
3,763,472 - ECD_03578 0.30 +0.4
3,763,675 - ECD_03578 0.59 +0.6
3,763,688 + ECD_03578 0.61 +0.2
3,763,689 - ECD_03578 0.61 +0.3
3,763,714 + ECD_03578 0.65 -1.1
3,763,715 - ECD_03578 0.65 -1.2
3,763,731 - ECD_03578 0.67 +1.0
3,763,888 + +0.9
3,763,892 + +0.2
3,763,892 + -0.7
3,763,892 + -2.4
3,763,892 + +0.0
3,763,893 - -1.9
3,763,893 - -0.0
3,763,893 - -0.2
3,763,924 - +0.8
3,763,944 + -0.6
3,763,945 - -1.6
3,763,977 - +0.7
3,763,977 - -0.5
3,763,977 - +1.3
3,763,977 - -1.4
3,763,988 + +0.9
3,763,988 + +1.6
3,763,988 + +0.1
3,763,988 + -0.2
3,764,009 + -0.3
3,764,194 - -0.8
3,764,209 + +0.6
3,764,210 - -0.9
3,764,214 - -2.6
3,764,229 + +0.1

Or see this region's nucleotide sequence