Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03575 and ECD_03576 overlap by 4 nucleotides ECD_03576 and ECD_03577 overlap by 17 nucleotides ECD_03577 and ECD_03578 overlap by 4 nucleotides ECD_03578 and ECD_03579 are separated by 277 nucleotides
ECD_03575: ECD_03575 - D-galactonate dehydratase, at 3,760,646 to 3,761,794
_03575
ECD_03576: ECD_03576 - 2-oxo-3-deoxygalactonate 6-phosphate aldolase, at 3,761,791 to 3,762,408
_03576
ECD_03577: ECD_03577 - 2-oxo-3-deoxygalactonate kinase, at 3,762,392 to 3,763,270
_03577
ECD_03578: ECD_03578 - D-galactonate catabolism operon transcriptional repressor, at 3,763,267 to 3,763,956
_03578
ECD_03579: ECD_03579 - putative lipoprotein, at 3,764,234 to 3,764,890
_03579
Position (kb)
3762
3763
3764 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3761.445 kb on + strand, within ECD_03575 at 3761.445 kb on + strand, within ECD_03575 at 3761.510 kb on - strand, within ECD_03575 at 3761.510 kb on - strand, within ECD_03575 at 3761.578 kb on - strand, within ECD_03575 at 3761.592 kb on + strand, within ECD_03575 at 3761.592 kb on + strand, within ECD_03575 at 3761.593 kb on - strand, within ECD_03575 at 3761.593 kb on - strand, within ECD_03575 at 3761.607 kb on - strand, within ECD_03575 at 3761.643 kb on + strand, within ECD_03575 at 3761.770 kb on - strand at 3761.770 kb on - strand at 3761.776 kb on + strand at 3761.912 kb on - strand, within ECD_03576 at 3761.999 kb on + strand, within ECD_03576 at 3761.999 kb on + strand, within ECD_03576 at 3762.000 kb on - strand, within ECD_03576 at 3762.000 kb on - strand, within ECD_03576 at 3762.214 kb on - strand, within ECD_03576 at 3762.214 kb on - strand, within ECD_03576 at 3762.360 kb on + strand at 3762.422 kb on + strand at 3762.423 kb on - strand at 3762.423 kb on - strand at 3762.425 kb on - strand at 3762.552 kb on + strand, within ECD_03577 at 3762.552 kb on + strand, within ECD_03577 at 3762.552 kb on + strand, within ECD_03577 at 3762.553 kb on - strand, within ECD_03577 at 3762.553 kb on - strand, within ECD_03577 at 3762.553 kb on - strand, within ECD_03577 at 3762.553 kb on - strand, within ECD_03577 at 3762.672 kb on - strand, within ECD_03577 at 3762.685 kb on + strand, within ECD_03577 at 3762.685 kb on + strand, within ECD_03577 at 3762.686 kb on - strand, within ECD_03577 at 3762.686 kb on - strand, within ECD_03577 at 3762.773 kb on + strand, within ECD_03577 at 3762.774 kb on - strand, within ECD_03577 at 3762.774 kb on - strand, within ECD_03577 at 3762.774 kb on - strand, within ECD_03577 at 3762.868 kb on - strand, within ECD_03577 at 3762.868 kb on - strand, within ECD_03577 at 3762.977 kb on - strand, within ECD_03577 at 3762.996 kb on - strand, within ECD_03577 at 3763.009 kb on + strand, within ECD_03577 at 3763.034 kb on + strand, within ECD_03577 at 3763.096 kb on + strand, within ECD_03577 at 3763.212 kb on + strand at 3763.257 kb on + strand at 3763.258 kb on - strand at 3763.294 kb on - strand at 3763.312 kb on - strand at 3763.371 kb on + strand, within ECD_03578 at 3763.372 kb on - strand, within ECD_03578 at 3763.372 kb on - strand, within ECD_03578 at 3763.372 kb on - strand, within ECD_03578 at 3763.372 kb on - strand, within ECD_03578 at 3763.461 kb on + strand, within ECD_03578 at 3763.462 kb on - strand, within ECD_03578 at 3763.462 kb on - strand, within ECD_03578 at 3763.472 kb on - strand, within ECD_03578 at 3763.472 kb on - strand, within ECD_03578 at 3763.675 kb on - strand, within ECD_03578 at 3763.688 kb on + strand, within ECD_03578 at 3763.689 kb on - strand, within ECD_03578 at 3763.714 kb on + strand, within ECD_03578 at 3763.715 kb on - strand, within ECD_03578 at 3763.731 kb on - strand, within ECD_03578 at 3763.888 kb on + strand at 3763.892 kb on + strand at 3763.892 kb on + strand at 3763.892 kb on + strand at 3763.892 kb on + strand at 3763.893 kb on - strand at 3763.893 kb on - strand at 3763.893 kb on - strand at 3763.924 kb on - strand at 3763.944 kb on + strand at 3763.945 kb on - strand at 3763.977 kb on - strand at 3763.977 kb on - strand at 3763.977 kb on - strand at 3763.977 kb on - strand at 3763.988 kb on + strand at 3763.988 kb on + strand at 3763.988 kb on + strand at 3763.988 kb on + strand at 3764.009 kb on + strand at 3764.194 kb on - strand at 3764.209 kb on + strand at 3764.210 kb on - strand at 3764.214 kb on - strand at 3764.229 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,761,445 + ECD_03575 0.70 +0.8 3,761,445 + ECD_03575 0.70 +0.2 3,761,510 - ECD_03575 0.75 +0.3 3,761,510 - ECD_03575 0.75 -0.1 3,761,578 - ECD_03575 0.81 +1.3 3,761,592 + ECD_03575 0.82 -3.6 3,761,592 + ECD_03575 0.82 -1.9 3,761,593 - ECD_03575 0.82 +1.6 3,761,593 - ECD_03575 0.82 -1.6 3,761,607 - ECD_03575 0.84 -2.8 3,761,643 + ECD_03575 0.87 -0.5 3,761,770 - +0.2 3,761,770 - +0.1 3,761,776 + +1.3 3,761,912 - ECD_03576 0.20 -0.4 3,761,999 + ECD_03576 0.34 +0.7 3,761,999 + ECD_03576 0.34 +0.4 3,762,000 - ECD_03576 0.34 -0.7 3,762,000 - ECD_03576 0.34 -0.3 3,762,214 - ECD_03576 0.68 -0.8 3,762,214 - ECD_03576 0.68 -1.4 3,762,360 + +0.7 3,762,422 + +1.6 3,762,423 - +0.5 3,762,423 - +0.2 3,762,425 - +0.8 3,762,552 + ECD_03577 0.18 -0.3 3,762,552 + ECD_03577 0.18 -0.2 3,762,552 + ECD_03577 0.18 -0.5 3,762,553 - ECD_03577 0.18 +0.3 3,762,553 - ECD_03577 0.18 +0.8 3,762,553 - ECD_03577 0.18 -2.5 3,762,553 - ECD_03577 0.18 +0.6 3,762,672 - ECD_03577 0.32 -0.9 3,762,685 + ECD_03577 0.33 +0.5 3,762,685 + ECD_03577 0.33 +0.0 3,762,686 - ECD_03577 0.33 +0.5 3,762,686 - ECD_03577 0.33 -0.2 3,762,773 + ECD_03577 0.43 -2.6 3,762,774 - ECD_03577 0.43 -1.2 3,762,774 - ECD_03577 0.43 -0.6 3,762,774 - ECD_03577 0.43 -0.2 3,762,868 - ECD_03577 0.54 -1.9 3,762,868 - ECD_03577 0.54 -2.8 3,762,977 - ECD_03577 0.67 -0.6 3,762,996 - ECD_03577 0.69 +0.8 3,763,009 + ECD_03577 0.70 +0.0 3,763,034 + ECD_03577 0.73 -0.6 3,763,096 + ECD_03577 0.80 +0.4 3,763,212 + +1.2 3,763,257 + -0.1 3,763,258 - -1.8 3,763,294 - -1.8 3,763,312 - -0.9 3,763,371 + ECD_03578 0.15 -0.3 3,763,372 - ECD_03578 0.15 +0.8 3,763,372 - ECD_03578 0.15 +0.2 3,763,372 - ECD_03578 0.15 -2.3 3,763,372 - ECD_03578 0.15 -0.4 3,763,461 + ECD_03578 0.28 -2.2 3,763,462 - ECD_03578 0.28 +0.0 3,763,462 - ECD_03578 0.28 +0.1 3,763,472 - ECD_03578 0.30 -0.0 3,763,472 - ECD_03578 0.30 +0.4 3,763,675 - ECD_03578 0.59 +0.6 3,763,688 + ECD_03578 0.61 +0.2 3,763,689 - ECD_03578 0.61 +0.3 3,763,714 + ECD_03578 0.65 -1.1 3,763,715 - ECD_03578 0.65 -1.2 3,763,731 - ECD_03578 0.67 +1.0 3,763,888 + +0.9 3,763,892 + +0.2 3,763,892 + -0.7 3,763,892 + -2.4 3,763,892 + +0.0 3,763,893 - -1.9 3,763,893 - -0.0 3,763,893 - -0.2 3,763,924 - +0.8 3,763,944 + -0.6 3,763,945 - -1.6 3,763,977 - +0.7 3,763,977 - -0.5 3,763,977 - +1.3 3,763,977 - -1.4 3,763,988 + +0.9 3,763,988 + +1.6 3,763,988 + +0.1 3,763,988 + -0.2 3,764,009 + -0.3 3,764,194 - -0.8 3,764,209 + +0.6 3,764,210 - -0.9 3,764,214 - -2.6 3,764,229 + +0.1
Or see this region's nucleotide sequence