Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03546 and ECD_03547 are separated by 45 nucleotides ECD_03547 and ECD_03548 are separated by 52 nucleotides ECD_03548 and ECD_03549 are separated by 174 nucleotides
ECD_03546: ECD_03546 - putative transporter, at 3,728,916 to 3,730,271
_03546
ECD_03547: ECD_03547 - DUF1198 family protein, at 3,730,317 to 3,730,769
_03547
ECD_03548: ECD_03548 - adenine permease, high affinity; adenine:H+ symporter, at 3,730,822 to 3,732,156
_03548
ECD_03549: ECD_03549 - cryptic adenine deaminase, at 3,732,331 to 3,734,097
_03549
Position (kb)
3730
3731
3732
3733 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3729.843 kb on - strand, within ECD_03546 at 3729.843 kb on - strand, within ECD_03546 at 3729.843 kb on - strand, within ECD_03546 at 3729.885 kb on - strand, within ECD_03546 at 3730.094 kb on + strand, within ECD_03546 at 3730.095 kb on - strand, within ECD_03546 at 3730.095 kb on - strand, within ECD_03546 at 3730.150 kb on - strand at 3730.214 kb on + strand at 3730.294 kb on + strand at 3730.295 kb on - strand at 3730.319 kb on - strand at 3730.382 kb on + strand, within ECD_03547 at 3730.383 kb on - strand, within ECD_03547 at 3730.592 kb on - strand, within ECD_03547 at 3730.596 kb on + strand, within ECD_03547 at 3730.650 kb on + strand, within ECD_03547 at 3730.651 kb on - strand, within ECD_03547 at 3730.800 kb on - strand at 3730.800 kb on - strand at 3730.820 kb on + strand at 3730.821 kb on - strand at 3730.821 kb on - strand at 3730.823 kb on + strand at 3730.824 kb on - strand at 3730.824 kb on - strand at 3730.923 kb on - strand at 3730.929 kb on + strand at 3730.930 kb on - strand at 3730.986 kb on + strand, within ECD_03548 at 3730.987 kb on - strand, within ECD_03548 at 3731.011 kb on - strand, within ECD_03548 at 3731.124 kb on + strand, within ECD_03548 at 3731.124 kb on + strand, within ECD_03548 at 3731.125 kb on - strand, within ECD_03548 at 3731.125 kb on - strand, within ECD_03548 at 3731.139 kb on + strand, within ECD_03548 at 3731.140 kb on - strand, within ECD_03548 at 3731.140 kb on - strand, within ECD_03548 at 3731.196 kb on + strand, within ECD_03548 at 3731.207 kb on + strand, within ECD_03548 at 3731.207 kb on + strand, within ECD_03548 at 3731.268 kb on - strand, within ECD_03548 at 3731.309 kb on - strand, within ECD_03548 at 3731.330 kb on - strand, within ECD_03548 at 3731.338 kb on + strand, within ECD_03548 at 3731.575 kb on - strand, within ECD_03548 at 3731.722 kb on + strand, within ECD_03548 at 3731.914 kb on + strand, within ECD_03548 at 3731.915 kb on - strand, within ECD_03548 at 3732.024 kb on - strand at 3732.226 kb on - strand at 3732.425 kb on - strand at 3732.588 kb on + strand, within ECD_03549 at 3732.766 kb on + strand, within ECD_03549 at 3732.767 kb on - strand, within ECD_03549 at 3732.770 kb on + strand, within ECD_03549 at 3732.770 kb on + strand, within ECD_03549 at 3732.771 kb on - strand, within ECD_03549 at 3732.895 kb on + strand, within ECD_03549 at 3732.991 kb on - strand, within ECD_03549 at 3733.006 kb on + strand, within ECD_03549 at 3733.008 kb on + strand, within ECD_03549 at 3733.009 kb on - strand, within ECD_03549 at 3733.009 kb on - strand, within ECD_03549 at 3733.009 kb on - strand, within ECD_03549 at 3733.011 kb on + strand, within ECD_03549 at 3733.012 kb on - strand, within ECD_03549
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,729,843 - ECD_03546 0.68 -1.0 3,729,843 - ECD_03546 0.68 -0.4 3,729,843 - ECD_03546 0.68 +1.1 3,729,885 - ECD_03546 0.71 -0.4 3,730,094 + ECD_03546 0.87 -1.1 3,730,095 - ECD_03546 0.87 -0.1 3,730,095 - ECD_03546 0.87 +0.1 3,730,150 - +0.7 3,730,214 + +0.7 3,730,294 + -1.2 3,730,295 - +1.0 3,730,319 - -0.6 3,730,382 + ECD_03547 0.14 -0.6 3,730,383 - ECD_03547 0.15 -0.3 3,730,592 - ECD_03547 0.61 +1.8 3,730,596 + ECD_03547 0.62 +1.6 3,730,650 + ECD_03547 0.74 +0.3 3,730,651 - ECD_03547 0.74 +0.0 3,730,800 - -2.8 3,730,800 - -1.1 3,730,820 + +0.3 3,730,821 - -1.1 3,730,821 - +1.2 3,730,823 + +0.3 3,730,824 - -0.2 3,730,824 - +0.3 3,730,923 - +0.2 3,730,929 + -0.6 3,730,930 - +0.6 3,730,986 + ECD_03548 0.12 +0.2 3,730,987 - ECD_03548 0.12 -2.0 3,731,011 - ECD_03548 0.14 +0.6 3,731,124 + ECD_03548 0.23 +0.8 3,731,124 + ECD_03548 0.23 -1.6 3,731,125 - ECD_03548 0.23 +0.6 3,731,125 - ECD_03548 0.23 -0.2 3,731,139 + ECD_03548 0.24 -0.2 3,731,140 - ECD_03548 0.24 -1.3 3,731,140 - ECD_03548 0.24 -1.0 3,731,196 + ECD_03548 0.28 -1.4 3,731,207 + ECD_03548 0.29 -1.2 3,731,207 + ECD_03548 0.29 -3.1 3,731,268 - ECD_03548 0.33 -0.5 3,731,309 - ECD_03548 0.36 +0.3 3,731,330 - ECD_03548 0.38 +1.3 3,731,338 + ECD_03548 0.39 -0.3 3,731,575 - ECD_03548 0.56 -3.2 3,731,722 + ECD_03548 0.67 +0.1 3,731,914 + ECD_03548 0.82 -0.2 3,731,915 - ECD_03548 0.82 -0.2 3,732,024 - +0.2 3,732,226 - -0.2 3,732,425 - +0.3 3,732,588 + ECD_03549 0.15 -0.5 3,732,766 + ECD_03549 0.25 +1.4 3,732,767 - ECD_03549 0.25 -0.2 3,732,770 + ECD_03549 0.25 -2.7 3,732,770 + ECD_03549 0.25 -0.2 3,732,771 - ECD_03549 0.25 -0.5 3,732,895 + ECD_03549 0.32 +0.0 3,732,991 - ECD_03549 0.37 -0.2 3,733,006 + ECD_03549 0.38 -1.1 3,733,008 + ECD_03549 0.38 +0.1 3,733,009 - ECD_03549 0.38 -3.3 3,733,009 - ECD_03549 0.38 -0.9 3,733,009 - ECD_03549 0.38 +0.1 3,733,011 + ECD_03549 0.38 -0.1 3,733,012 - ECD_03549 0.39 +0.7
Or see this region's nucleotide sequence